mRNA_P-fluviatile_contig12.1365.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1365.1
Unique NamemRNA_P-fluviatile_contig12.1365.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:686904..688238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1335
Cds size711
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1365.1prot_P-fluviatile_contig12.1365.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 687057..687767 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.1757958-UTR-P-fluviatile_contig12:686903..6870561622815489.1757958-UTR-P-fluviatile_contig12:686903..687056Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 686904..687056 +
1693562047.4189236-UTR-P-fluviatile_contig12:686903..6870561693562047.4189236-UTR-P-fluviatile_contig12:686903..687056Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 686904..687056 +
1622815489.200514-UTR-P-fluviatile_contig12:687767..6882381622815489.200514-UTR-P-fluviatile_contig12:687767..688238Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 687768..688238 +
1693562047.4354432-UTR-P-fluviatile_contig12:687767..6882381693562047.4354432-UTR-P-fluviatile_contig12:687767..688238Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 687768..688238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.1884565-CDS-P-fluviatile_contig12:687056..6877671622815489.1884565-CDS-P-fluviatile_contig12:687056..687767Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 687057..687767 +
1693562047.4272757-CDS-P-fluviatile_contig12:687056..6877671693562047.4272757-CDS-P-fluviatile_contig12:687056..687767Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 687057..687767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1365.1

>prot_P-fluviatile_contig12.1365.1 ID=prot_P-fluviatile_contig12.1365.1|Name=mRNA_P-fluviatile_contig12.1365.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=237bp
MSDPMDVSKETVTDPSSDAAAATQAASPADPSDTKSEVMDTGESSTAAAD
GNAGSDAVDKPSTENEAVEKASNGGVAAETGAVSIPKDAHAAEQTPSAAA
AAAVTKDSPQDATITTDAASAAAPAAAATSSSTEGGPTTHATTTTAAAAD
TTAAAEEEEPEDVEAMAAAAIKAALAAAAGVRRRRRRRQLRQRRRTRRAT
AQALLPLLLLVMPQERSHPRRSARGEGLGHPGCRTR*
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mRNA from alignment at P-fluviatile_contig12:686904..688238+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1365.1 ID=mRNA_P-fluviatile_contig12.1365.1|Name=mRNA_P-fluviatile_contig12.1365.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1335bp|location=Sequence derived from alignment at P-fluviatile_contig12:686904..688238+ (Porterinema fluviatile SAG_2381)
TTTAAGCCGTCCCAGGGGTTTATCCAGGGGGTCCAgGGGGGCCGATCCAG
GGTAAGGTGCAGTGATCAACCACGGCTCCCCATGGACTAGTTTGAATGTG
CGTCCTGATCACTGCTTCGGTCATCACAGCCTGCGCGTACCGATTCCTAA
AGTATGAGCGACCCTATGGACGTCAGCAAAGAAACGGTCACCGATCCTTC
TTCAGACGCGGCGGCAGCAACGCAAGCTGCTTCTCCGGCGGATCCATCTG
ACACAAAGTCGGAAGTTATGGACACCGGCGAGAGCAGCACTGCGGCAGCT
GATGGCAATGCCGGTAGCGACGCCGTGGACAAGCCTTCAACCGAAAATGA
AGCTGTGGAGAAAGCAAGCAATGGTGGCGTTGCTGCGGAAACAGGCGCCG
TATCGATTCCGAAGGATGCCCATGCAGCCGAACAAACACCTTCTGCTGCC
GCCGCCGCCGCGGTCACCAAGGACTCGCCTCAGGATGCCACAATCACCAC
CGATGCTGCTTCTGCTGCCGCTCCGGCCGCAGCGGCTACCTCTTCTTCCA
CAGAGGGAGGCCCAACCACTCATGCTACTACCACTACGGCCGCTGCTGCT
GACACCACGGCTGCTGCTGAAGAAGAGGAGCCGGAAGACGTGGAAGCAAT
GGCCGCGGCCGCGATCAAGGCGGCGCTCGCGGCGGCCGCCGGGGTGCGGC
GGCGGCGGCGGCGGCGGCAGCTTCGGCAGCGGCGGCGGACAAGGAGGGCA
ACGGCACAGGCACTCCTGCCGCTGCTGCTGCTGGTGATGCCGCAGGAACG
GAGCCACCCAAGAAGAAGCGCGCGAGGAGAGGGGCTGGGACACCCCGGTT
GCCGGACCCGCTGAGGTCAAGAAGGGGTGGGGAGACGCGCCGCAGCCCGT
GGCGCCCGCGGTTCCCATGACCCCGTTGCAGGTAATTATTTTTCTCCTTG
CTGATTGCAGAGAGCGGCAGAGGCTTGACGTGTAATAAGCGGGAGCATTG
CGCAAAGGTGGCGGCCTTATCGGTGCTGCCCCTTCCTTGTGTCATGTTTC
GTGTATTCATACGCGCAACGGGGCGGTCAAGGGGGGGGTATCATCAGTGT
TCGTGTGTGCAGACCAGCTAAGACCCGTGTACAGCATTATATTTGCCGGG
TAATCGTGCACTCGGTCATGGCTCGGCAGGGCTATCGCAAAGCTTCGACG
GAAAATAAATCCACCGGATACAATCTGTAAACAGGTAGCCCAGTCTTTCA
GGGGAACCTCGCCGTCCAACTTCGCCATCGGCGACCTTGCCGCGCGTGGG
AGGTACTGTACTCGGCAAGGATCGTCGATCGAAAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:686904..688238+

>mRNA_P-fluviatile_contig12.1365.1 ID=mRNA_P-fluviatile_contig12.1365.1|Name=mRNA_P-fluviatile_contig12.1365.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1422bp|location=Sequence derived from alignment at P-fluviatile_contig12:686904..688238+ (Porterinema fluviatile SAG_2381)
ATGAGCGACCCTATGGACGTCAGCAAAGAAACGGTCACCGATCCTTCTTC
AGACGCGGCGGCAGCAACGCAAGCTGCTTCTCCGGCGGATCCATCTGACA
CAAAGTCGGAAGTTATGGACACCGGCGAGAGCAGCACTGCGGCAGCTGAT
GGCAATGCCGGTAGCGACGCCGTGGACAAGCCTTCAACCGAAAATGAAGC
TGTGGAGAAAGCAAGCAATGGTGGCGTTGCTGCGGAAACAGGCGCCGTAT
CGATTCCGAAGGATGCCCATGCAGCCGAACAAACACCTTCTGCTGCCGCC
GCCGCCGCGGTCACCAAGGACTCGCCTCAGGATGCCACAATCACCACCGA
TGCTGCTTCTGCTGCCGCTCCGGCCGCAGCGGCTACCTCTTCTTCCACAG
AGGGAGGCCCAACCACTCATGCTACTACCACTACGGCCGCTGCTGCTGAC
ACCACGGCTGCTGCTGAAGAAGAGGAGCCGGAAGACGTGGAAGCAATGGC
CGCGGCCGCGATCAAGGCGGCGCTCGCGGCGGCCGCCGGGGTGCGGCGGC
GGCGGCGGCGGCGGCAGCTTCGGCAGCGGCGGCGGACAAGGAGGGCAACG
GCACAGGCACTCCTGCCGCTGCTGCTGCTGGTGATGCCGCAGGAACGGAG
CCACCCAAGAAGAAGCGCGCGAGGAGAGGGGCTGGGACACCCCGGTTGCC
GGACCCGCTGAATGAGCGACCCTATGGACGTCAGCAAAGAAACGGTCACC
GATCCTTCTTCAGACGCGGCGGCAGCAACGCAAGCTGCTTCTCCGGCGGA
TCCATCTGACACAAAGTCGGAAGTTATGGACACCGGCGAGAGCAGCACTG
CGGCAGCTGATGGCAATGCCGGTAGCGACGCCGTGGACAAGCCTTCAACC
GAAAATGAAGCTGTGGAGAAAGCAAGCAATGGTGGCGTTGCTGCGGAAAC
AGGCGCCGTATCGATTCCGAAGGATGCCCATGCAGCCGAACAAACACCTT
CTGCTGCCGCCGCCGCCGCGGTCACCAAGGACTCGCCTCAGGATGCCACA
ATCACCACCGATGCTGCTTCTGCTGCCGCTCCGGCCGCAGCGGCTACCTC
TTCTTCCACAGAGGGAGGCCCAACCACTCATGCTACTACCACTACGGCCG
CTGCTGCTGACACCACGGCTGCTGCTGAAGAAGAGGAGCCGGAAGACGTG
GAAGCAATGGCCGCGGCCGCGATCAAGGCGGCGCTCGCGGCGGCCGCCGG
GGTGCGGCGGCGGCGGCGGCGGCGGCAGCTTCGGCAGCGGCGGCGGACAA
GGAGGGCAACGGCACAGGCACTCCTGCCGCTGCTGCTGCTGGTGATGCCG
CAGGAACGGAGCCACCCAAGAAGAAGCGCGCGAGGAGAGGGGCTGGGACA
CCCCGGTTGCCGGACCCGCTGA
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