mRNA_P-fluviatile_contig12.1358.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1358.1
Unique NamemRNA_P-fluviatile_contig12.1358.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig12.1358.1 vs. uniprot
Match: D7FWX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX5_ECTSI)

HSP 1 Score: 291 bits (745), Expect = 6.510e-91
Identity = 153/172 (88.95%), Postives = 164/172 (95.35%), Query Frame = 1
Query:    1 MRAAALMLVGLGG-AAAAAADSVSAYHMSCHGVYNKIARQAMGDIKELQSRVDAGEMCPALGQKADSICNQALEQFSTDAADTENDPAKEAIFDEKVEELETALDLPLQLVYMKQLTLLREKALQRYKTLAKGTETSDYQAMVAADQWFVKEAEASTRAGASWEFAAVRNSL 513
            M+A  LM +GL G AA AA+DSVSAYHMSCHGVYNKIARQAMGDIKELQ+RVD+GE CPALG+KADSICNQALEQFSTDAADTENDP KE+IFDEKVEELET+LDLPLQLVYMKQLTLLREKALQRYKTLAKG+ETSDYQAMVAADQWFVKEAEASTRAG+SWEF+AVRNSL
Sbjct:    1 MKATCLMFLGLAGRAAGAASDSVSAYHMSCHGVYNKIARQAMGDIKELQTRVDSGEACPALGEKADSICNQALEQFSTDAADTENDPTKESIFDEKVEELETSLDLPLQLVYMKQLTLLREKALQRYKTLAKGSETSDYQAMVAADQWFVKEAEASTRAGSSWEFSAVRNSL 172          
BLAST of mRNA_P-fluviatile_contig12.1358.1 vs. uniprot
Match: A0A835YIM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM6_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.720e-56
Identity = 102/166 (61.45%), Postives = 130/166 (78.31%), Query Frame = 1
Query:   16 LMLVGLGGAAAAAADSVSAYHMSCHGVYNKIARQAMGDIKELQSRVDAGEMCPALGQKADSICNQALEQFSTDAADTENDPAKEAIFDEKVEELETALDLPLQLVYMKQLTLLREKALQRYKTLAKGTETSDYQAMVAADQWFVKEAEASTRAGASWEFAAVRNSL 513
            L    L G AAAA+ +   Y ++CH V+ K+   AM DI  L+S+V+ GE+CP LG KAD+ICNQALEQFS++A D END A E+IFDEKVEELE  LD+PLQ+VY++QL L+REKALQRYK  AKG+ETSDYQAM+AADQ++ KEAE+STR G+ W++A  R+SL
Sbjct:   10 LAAAALAGTAAAASANPDMYSLTCHKVFCKVTASAMKDIDALKSKVEGGELCPGLGAKADAICNQALEQFSSEAPDAENDDALESIFDEKVEELEKTLDMPLQMVYLRQLALIREKALQRYKAAAKGSETSDYQAMIAADQFYAKEAESSTRQGSGWDYARERSSL 175          
BLAST of mRNA_P-fluviatile_contig12.1358.1 vs. uniprot
Match: A0A7S1H297_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H297_9STRA)

HSP 1 Score: 154 bits (389), Expect = 6.450e-40
Identity = 77/115 (66.96%), Postives = 93/115 (80.87%), Query Frame = 3
Query:  513 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLSALQNQLYGGQPSPWNFGAAYRIPDTNINLSGTYQQGKANLQMTCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLSI 857
            Q+ MN +A+ GKKATD  +++AQQ  TAMQ+LQ QQQ +  LQ QLYG Q +PWN G AYRIPDTN NL G+YQQGK N+Q++CVPDEY+ MLG  GFT+GVGPGNLGLS+NLSI
Sbjct:   90 QSVMNSIAESGKKATDVQMKSAQQQQTAMQFLQSQQQMIQQLQMQLYG-QNTPWNVGFAYRIPDTNFNLQGSYQQGKTNVQLSCVPDEYAPMLGPSGFTNGVGPGNLGLSLNLSI 203          
BLAST of mRNA_P-fluviatile_contig12.1358.1 vs. uniprot
Match: A0A7S2KKJ0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KKJ0_9STRA)

HSP 1 Score: 150 bits (380), Expect = 2.860e-39
Identity = 77/115 (66.96%), Postives = 92/115 (80.00%), Query Frame = 3
Query:  513 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLSALQNQLYGGQPSPWNFGAAYRIPDTNINLSGTYQQGKANLQMTCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLSI 857
            Q+ M+E A   KK T+  V+++QQ STAMQ+LQ QQQ +  LQ QLYG Q SPWN G AYRIPDTN NL G+YQQG+ANLQ++CVPDEY+ MLG  GFT+GVGPGNLGLS+NLSI
Sbjct:   42 QSIMSEFATTHKKLTETQVKSSQQQSTAMQFLQHQQQMIQQLQMQLYG-QSSPWNVGVAYRIPDTNFNLQGSYQQGRANLQLSCVPDEYAPMLGPNGFTNGVGPGNLGLSLNLSI 155          
BLAST of mRNA_P-fluviatile_contig12.1358.1 vs. uniprot
Match: B8CCD1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCD1_THAPS)

HSP 1 Score: 154 bits (388), Expect = 5.020e-39
Identity = 78/115 (67.83%), Postives = 93/115 (80.87%), Query Frame = 3
Query:  513 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLSALQNQLYGGQPSPWNFGAAYRIPDTNINLSGTYQQGKANLQMTCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLSI 857
            QT M+E AQ  KK T+  V+++QQ STAMQ+LQ QQQ +  LQ QLYG Q SPWN G AYRIPDTN NL G+YQQG+AN+Q++CVPDEY+ MLG  GFT+GVGPGNLGLS+NLSI
Sbjct:  151 QTVMSEFAQTTKKLTETQVKSSQQQSTAMQFLQHQQQMIQQLQMQLYG-QSSPWNVGVAYRIPDTNFNLQGSYQQGRANVQLSCVPDEYAPMLGPNGFTNGVGPGNLGLSLNLSI 264          
BLAST of mRNA_P-fluviatile_contig12.1358.1 vs. uniprot
Match: A0A6V2EIW0_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2EIW0_9STRA)

HSP 1 Score: 152 bits (383), Expect = 6.970e-38
Identity = 76/115 (66.09%), Postives = 90/115 (78.26%), Query Frame = 3
Query:  513 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLSALQNQLYGGQPSPWNFGAAYRIPDTNINLSGTYQQGKANLQMTCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLSI 857
            Q+ MN+MAQ  KK  D  +++A Q STAMQYLQ QQQ +  LQ QLYG Q SPWN G AYRIPDTN NL G+YQQG+ N Q++CVPDEY+ +LG  GFT+GVGPGNLGLS+NLSI
Sbjct:  190 QSVMNDMAQTSKKLIDVQMKSANQQSTAMQYLQQQQQMIQQLQMQLYG-QSSPWNVGLAYRIPDTNFNLQGSYQQGRGNFQLSCVPDEYAPLLGPNGFTNGVGPGNLGLSLNLSI 303          
BLAST of mRNA_P-fluviatile_contig12.1358.1 vs. uniprot
Match: A0A7S0ACT7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ACT7_9STRA)

HSP 1 Score: 143 bits (360), Expect = 6.360e-37
Identity = 70/115 (60.87%), Postives = 91/115 (79.13%), Query Frame = 3
Query:  513 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLSALQNQLYGGQPSPWNFGAAYRIPDTNINLSGTYQQGKANLQMTCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLSI 857
            Q+ MN++A   KK  D  +++A++  TA+Q+LQ QQQ +  LQ QLYG Q +PWN G AYRIPDTN NL G+YQQG+ NLQ++CVPDEY+ MLG+ GFT+GVGPGNLGLS+NLS+
Sbjct:    6 QSVMNDVASTRKKLIDVQMKSAEKHQTALQFLQQQQQIIQQLQMQLYG-QTAPWNVGVAYRIPDTNFNLQGSYQQGRTNLQLSCVPDEYAPMLGANGFTNGVGPGNLGLSLNLSL 119          
BLAST of mRNA_P-fluviatile_contig12.1358.1 vs. uniprot
Match: B7G8P6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8P6_PHATC)

HSP 1 Score: 148 bits (373), Expect = 1.970e-36
Identity = 73/115 (63.48%), Postives = 90/115 (78.26%), Query Frame = 3
Query:  513 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLSALQNQLYGGQPSPWNFGAAYRIPDTNINLSGTYQQGKANLQMTCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLSI 857
            Q+ MN +A+  +KA D  + +AQQ  TAMQ+LQ QQQ +  LQ QLYG Q SPWN G AYRIPDTN NL G+YQQG+AN+Q++CVPDEY+  LG  GFT+GVGPGNLGLS+NLS+
Sbjct:  195 QSVMNNIAESSRKAMDVQMNSAQQQQTAMQFLQSQQQMIQQLQMQLYG-QSSPWNVGVAYRIPDTNFNLQGSYQQGRANVQLSCVPDEYAPFLGPNGFTNGVGPGNLGLSLNLSV 308          
BLAST of mRNA_P-fluviatile_contig12.1358.1 vs. uniprot
Match: A0A448Z9H7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9H7_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.650e-36
Identity = 79/134 (58.96%), Postives = 98/134 (73.13%), Query Frame = 3
Query:  459 SEHSGG-GFVGIRRSAKQPQTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLSALQNQLYGGQPSPWNFGAAYRIPDTNINLSGTYQQGKANLQMTCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLSI 857
            SE  GG  F G R +    QT MN +A+ G+KAT+  +++AQQ  TAMQ+LQ     +  LQ QLYG Q SPWN G AYRIPDTN NL G+YQQG+AN+Q++CVPDEY+  LG  GFT+GVGPGNLGLS+NLS+
Sbjct:  178 SEADGGWDFTGERAAL---QTVMNRLAESGQKATEVQMKSAQQQQTAMQFLQXXXXMIQQLQMQLYG-QSSPWNVGVAYRIPDTNFNLQGSYQQGRANVQLSCVPDEYAPFLGPNGFTNGVGPGNLGLSLNLSV 307          
BLAST of mRNA_P-fluviatile_contig12.1358.1 vs. uniprot
Match: A0A1E7FQ76_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQ76_9STRA)

HSP 1 Score: 144 bits (362), Expect = 6.200e-35
Identity = 71/115 (61.74%), Postives = 86/115 (74.78%), Query Frame = 3
Query:  513 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLSALQNQLYGGQPSPWNFGAAYRIPDTNINLSGTYQQGKANLQMTCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLSI 857
            Q+ MN +A+   KA D  + +A Q  TAMQ+LQ Q Q +  LQ QLYG Q SPWN G AYRIPDTN NL G+YQQGK N+Q++CVPDEY+  LG  GFT+GVGPGNLGLS+NLS+
Sbjct:  192 QSVMNRLAESSNKAQDIQISSASQQQTAMQFLQSQAQMIQQLQQQLYG-QASPWNVGVAYRIPDTNFNLQGSYQQGKTNVQLSCVPDEYAPFLGPSGFTNGVGPGNLGLSLNLSV 305          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWX5_ECTSI6.510e-9188.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YIM6_9STRA1.720e-5661.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1H297_9STRA6.450e-4066.96Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S2KKJ0_9STRA2.860e-3966.96Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8CCD1_THAPS5.020e-3967.83Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A6V2EIW0_9STRA6.970e-3866.09Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S0ACT7_9STRA6.360e-3760.87Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
B7G8P6_PHATC1.970e-3663.48Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A448Z9H7_9STRA3.650e-3658.96Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7FQ76_9STRA6.200e-3561.74Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:535152..544372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.7
Seed ortholog evalue1.1e-76
Seed eggNOG ortholog2880.D7FWX5
EggNOG OGs28Q14@1,2QWPT@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionRHD3/Sey1
Ec32 orthologEc-09_004800.1
Exons8
Model size1810
Cds size525
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815493.8704543-UTR-P-fluviatile_contig12:535151..5362061622815493.8704543-UTR-P-fluviatile_contig12:535151..536206Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 535152..536206 -
1693562053.7328134-UTR-P-fluviatile_contig12:535151..5362061693562053.7328134-UTR-P-fluviatile_contig12:535151..536206Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 535152..536206 -
1622815493.8834312-UTR-P-fluviatile_contig12:537009..5371321622815493.8834312-UTR-P-fluviatile_contig12:537009..537132Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 537010..537132 -
1693562053.7457528-UTR-P-fluviatile_contig12:537009..5371321693562053.7457528-UTR-P-fluviatile_contig12:537009..537132Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 537010..537132 -
1622815493.8962803-UTR-P-fluviatile_contig12:538335..5384421622815493.8962803-UTR-P-fluviatile_contig12:538335..538442Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 538336..538442 -
1693562053.753973-UTR-P-fluviatile_contig12:538335..5384421693562053.753973-UTR-P-fluviatile_contig12:538335..538442Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 538336..538442 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815493.9105232-CDS-P-fluviatile_contig12:538442..5384521622815493.9105232-CDS-P-fluviatile_contig12:538442..538452Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 538443..538452 -
1693562053.7621422-CDS-P-fluviatile_contig12:538442..5384521693562053.7621422-CDS-P-fluviatile_contig12:538442..538452Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 538443..538452 -
1622815493.9260223-CDS-P-fluviatile_contig12:539694..5397921622815493.9260223-CDS-P-fluviatile_contig12:539694..539792Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 539695..539792 -
1693562053.7707055-CDS-P-fluviatile_contig12:539694..5397921693562053.7707055-CDS-P-fluviatile_contig12:539694..539792Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 539695..539792 -
1622815493.9370582-CDS-P-fluviatile_contig12:540405..5405371622815493.9370582-CDS-P-fluviatile_contig12:540405..540537Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 540406..540537 -
1693562053.7799392-CDS-P-fluviatile_contig12:540405..5405371693562053.7799392-CDS-P-fluviatile_contig12:540405..540537Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 540406..540537 -
1622815493.9484103-CDS-P-fluviatile_contig12:541572..5416471622815493.9484103-CDS-P-fluviatile_contig12:541572..541647Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 541573..541647 -
1693562053.7901552-CDS-P-fluviatile_contig12:541572..5416471693562053.7901552-CDS-P-fluviatile_contig12:541572..541647Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 541573..541647 -
1622815493.9641192-CDS-P-fluviatile_contig12:542221..5423381622815493.9641192-CDS-P-fluviatile_contig12:542221..542338Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 542222..542338 -
1693562053.8027155-CDS-P-fluviatile_contig12:542221..5423381693562053.8027155-CDS-P-fluviatile_contig12:542221..542338Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 542222..542338 -
1622815493.9772-CDS-P-fluviatile_contig12:544279..5443721622815493.9772-CDS-P-fluviatile_contig12:544279..544372Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 544280..544372 -
1693562053.8162124-CDS-P-fluviatile_contig12:544279..5443721693562053.8162124-CDS-P-fluviatile_contig12:544279..544372Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 544280..544372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1358.1prot_P-fluviatile_contig12.1358.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 538443..544372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1358.1

>prot_P-fluviatile_contig12.1358.1 ID=prot_P-fluviatile_contig12.1358.1|Name=mRNA_P-fluviatile_contig12.1358.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=175bp
MRAAALMLVGLGGAAAAAADSVSAYHMSCHGVYNKIARQAMGDIKELQSR
VDAGEMCPALGQKADSICNQALEQFSTDAADTENDPAKEAIFDEKVEELE
TALDLPLQLVYMKQLTLLREKALQRYKTLAKGTETSDYQAMVAADQWFVK
EAEASTRAGASWEFAAVRNSLRRR*
back to top

mRNA from alignment at P-fluviatile_contig12:535152..544372-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1358.1 ID=mRNA_P-fluviatile_contig12.1358.1|Name=mRNA_P-fluviatile_contig12.1358.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=9221bp|location=Sequence derived from alignment at P-fluviatile_contig12:535152..544372- (Porterinema fluviatile SAG_2381)
ATGAGGGCGGCAGCGTTGATGTTGGTGGGGCTGGGGGGCGCAGCGGCGGC GGCGGCGGACTCGGTTAGCGCCTACCACATGAGCTGCCACGGGGTGAGTC AAACCGTCAATCAAAGGCTTGGTGGTCGACCGATAGTCCGGCTGCTGTCA ACTACGACCACGTCGGGCCAGCAGGGGGGTAGCCTTTGCTGTGGATGCGA TGCGTTTGTGTTTTTTGCCACTTGCCACGTGCTGGTGCGGTAGGCAGCGA GCGGTCCTGCTTGCTGCAACAACCCGAAAACTCTGCTTGAGAAACCACTG CTTGGTGCCTTGGTGCCAATGCTCGCTTGCGCGAAGGTTCTTGGTCTAAC GATGCCAATGATTGCTTCGTTGGGGGCGCGGAGAGCGTCCTCCTCAGCGC GCGCGGACGAGTTTGAAATGCACTAGTTTTACATGCACTCGCAGCATACA GCAGTGAAGGCGGGCATGAAACAGCAGTGTAGTGCAACGTCGAACGGGCA CCACGGCCGCCTTTCAGTGTGCTGCAACATCTGTCGTCGCGGCCGCAGCT GCATACATCTACCCACCATGCTTGATACATTCAGGTTCGTGTTGTTTATT AGCTGCGTCTTCCGTGCCACGTAAAAGTCGGCGGCACGTCAAACTGCGAA TCCCGCGCTTCTGTTTTTCAACACACTACACACCTTCCGAGAGCAGCTGA GGAGAGAGGGTTTGTGTCTCTTACTACCACCTAACACAGCCTACTGCACA AAATATCGAGCCCGATTTGGTGGCCGATTTCGGCCACAAACACACCTTGT CGATATTCCTGCACGCCGTGTGTGTCAGTCACGTAAGGTACGACGCCCCT AGCATCGATATGTCGGTCCCCCCAACCGCCGCGTCTCGAATTTCTGGTGG GAGGACGGTGGTAAGTGCATTAGATTGTATAAGCTTAAGGCCGATATTGG AAAAGTTGAATGTTTCACGTCTTTACCATTACTCTTTCTTCACGACAAAC GTTTTTGTGCCTCTTTTCTGAATGTCTTGTCTCGACCTGTACGTCAACTT CCGGGTCGTCACGCGGCACAGGTTGTGCAATAGTAGTGATTGGGTTTGGG AATCGGCTGGGTTTGCCATCCTTTTGAATTTCGATTGTCGGTGAAAGCAT TATCCTAACAAACAAAAGCAAGCCTCATGTTGTGACAATTCCTGAGGGTT AGGGTTAATTGTTCCGCAGCAGACCTCGTCGCCACAACCCAGTGGAGCAT ACTAGGGTGAGTTGATTGCACTCATGGTTATGATGCCCACGGAAGCCGAT CCGGTAGGATAGACCATTATGGATATTTCAGGGTACTGAGAGGTGTTTGC AGGGGTTTTTGTTTCGTGAGCAACAACAACCACAAGGGCAGCAACAGTTC ATGGGTTGTGCCGAGATTTATTCGTATTTTTTTGTCTGTCCGAAGACCTG TTTGCTTTGCGCCGTACACTCGTTTATTGGTTCGTTTTTTACAATCGCGA GCCTTCTCTTCCATTGTCACCTGGCATTTGCGGTCGCACCTCCCAAAGTC AACATTCAGGTCATGACCTGTATGTGTCTTCGCCTTTCGCACTCAGCCGA GTTTGCTATTTATTACTTCGAAGTAGTTGGTTTGATGTACTTTTCAAGGT CTACATTGAAATGGCACGTTGTTCAATTGGCGACTCGAAAGACTTGCACT TCGGCCGTGTGGTTTTGCCCCTCGAAGTATCTCGATCCAGACTGACGTCT CTGGGCCTACGAAATCAAATTGAAACTGTGACGTTTTTTGCATATTTGTT GTTTTCAAATCGCGCACGTTTTATGCCCTCCGCGAAGGCTCACGACACTC CGTTGAACTTCGAATTTGCAAACGTTCTGTTTTCTGGTGTACAACAAATT TGTGCATCTGTCCTTGTGTGGATTTCGCTATCGATGTTTGTCTTTCTTGC AAGCTCACGCCAGTTTATGTTGGTCTGCGCTTGTGTGGATTTCGCAATCG ATTCCTTCTATAATAATTCATTATTTTTCTGCAGGTTTACAACAAGATCG CACGACAAGCGATGGGGGACATCAAGGAGTTGCAGTCGAGGGTCGACGCG GGGGAGATGTGTCCAGCGCTGGGACAGAAGGCCGACAGCATTTGCAACCA GGTTTGTACGGGATTGGGTCGTGTTGCTTGCCGTTGTTGTGACTTTTACT TTCTTGAGTACGCCGGTCTCCTTCCGATTTGAGCAGCTGCATCTGTCGCC TTTGCTGTGATGACCTATTTGAGTCCGTCGATCTACTTCTGACCTAAGTA GCTGCGTATGTTGCCGTTGGTATGGCTTTGAATTGCTTGAGTGCTTTGGT CTACTTCCCTCTTCAGTCCATACTCCATCTTGTGCTCTGTTATTGTTTCT TGTGCAGTGCTTGACTTGCTGAAGTGCAGCAGTCTTTTTTTTATACTTGC GGCTGATGATCACTCGAGGTTTGTTTGACTCAGAATCTCATCGGTGCCTC GTGCTCTGCAGTTGTAGCAGGCTTGACTAGTGGTTTGCTTGTTCGAAAGG CGTTTGTGCCGACACCCTTGGGACTAGATGACTTGCTGCGTTGCCATGAA TTTTCGTAGATTCTCGCCCTGCCTTGTCCATTGATGTCCTGTGTTCTACC GTGCTGTTCTATGCTGTGCTCGTTTGTTGTCCCCGTCGCGCGGCGCTCTC GGTGCTGTGGGATTTCGGGCACCAGGCACTGGAGCAGTTCAGCACGGATG CGGCCGACACGGAGAACGACCCTGCCAAGGAGGCCATCTTCGACGAGAAG GTGTACCTGCCGATTGTTCCGCCTCAGTCTCATTGGTCCTTGCTGTTGGT TCTTGGTTTATTCTAGTGGTTCGTGATCTCGTTTTTGACGCTGTTGTCGT TCTTGTTCGTGTTGTCAATGCTGCTGCTGCGGCGGCGGCTGGTTGCTGCT ATGGTCGCCGCGCGTCGTCGTCGTTGTCCTTGTTCCTGCCCTTGTTCTTT ATGTTGTTGGTTCGTTGCCTTGGTTTGTTGTTGCTGTTGATATTGCTCCA GATTGTGCCAATGGCTGTTTTGGCGTGTCATCATTTGTGGGCCTTGTTGT AGTTGTCCCGGCTGTTGTCGCGACCTTGTCGCCAAAAATTGATTCGTCTT GTCCCAAACTTGCGGGCGGTAGTACGACATGATTCGCGTGTCTAGCGGTA AATTATGGGCTAATACATATTCGCAGCAGCTGCGTTGCCCCCCGATTCGC AATACCTCAACCGTGTGCCGAGGAATCGGGCCGGGAAGTGTAGCCAACAT TGTTCTGCTGTTATCTTGTGGTCAGCAGAATAGGACTAATTTTTTTTTCT TTTTTTGCACGTCAAAGCCTTTTCAAACACCTCCAGTACGTTCGAATGTC CGTGCGCTCTCCTACCGAACCGATTCGTGGTCACAGGCTATAGCGGTAGG TCATACTCTTGGTGGTGTTAGAGCTAGCACTCCACCCAAAACCTGAAAGC GATGAGTATCTGATTACGGAGGGTAACGTCTTCCCCATCTCGTATCGCTC GTAAAGTGCACTTAATGTGCCTCATCGATAAGATGTGGGGATGCGACAGT CCAAAGATGTGGTCGGAGACTCGTACCGATGGGTATGCGGCAGACTTATT TTTGCGGCGATTTGATCGCGGTAGTACTCCTTTCAGGATCGACAAAAGAT TGACGAGGTGAGCGTTTTTTGTGTTGTGTATTTACTTCAGTTAGAGGAGC TAGAAATGGCGCCGGACCTGCCGCTGCAGCTCGTGTACATGAAGCAGCTC CGTATCCAAACCCCAGCGCTTGCCCTGACCCTCAGGTAGAGGAGCTGGAA ACGGCGTTGGACCTGCCGCTGCAGCTGGTCTACATGAAGCAGCTCACGCT GCTACGAGAGAAGGCGCTTCAGAGGTACAAGACGCTCGCCAAGGGAACCG AGACCAGCGACTACCAGGTACGAAAGGCACCGAACAGAATTGCCCGCGGC CTTGCCATGCAGTTGGGGGCCTTTTACGGTATGATGCCTCCCACTAAATT TGTTTTGAGGTCCTCGCGGGCGAATTTGTTTTTTTGGGGGGGGGGCGGAG AGGGGGTTAAGACTCGGCAATTTTCAGATGAAAATTCGAGGATCGGAAAG TTTGGACAGCGTGCGTGCCTGCGTCGCTTAAATTGAAAGGCAGCACACCT CGCAACAAAACGTAGTCTTGGTGCCCCGAGTGAATGTAGGGGCAGGAATC GAGGGTAAAAAATAAACCTTTAGGCGCACGTGGGCGCTCTTGATCACGTT TTCCGTTTTTTCTGCATTCTGCGTCGAGAATCGTCACAAGGCGAACGAAA CGGCCTTCCTTGACTCCAAACTCGGTGTCGCGTGTGAAGCATATACATAT ATCGGGTTTGACATGCAGTACAAGGGGCGACATCGCATGAAATCTCGCCT AATGGAGGGGGGCAAGAGGGATTGATATACGAGGCAGCTTCTCGATAGTG TTGTGCTACAATACGCGTATCCGTTTGATTGCTGGATCCCACAATCCCCC CCACTCTCCCCGCCTTTTTGTTCCGTCTAGGCGATGGTAGCCGCGGATCA GTGGTTCGTGAAAGAGGCCGAAGCGAGCACTCGGGCGGGGGCTTCGTGGG AATTCGCCGCAGTGCGAAACAGCCTCAGGTGCAGTTCAATTTCATTGAAC TATATTCAGCGACCAATACATGCCACGAATTTTCGCATGTCAAAACGATG CCGGGTGCTCGACGTGGATTCGGATCGCTGGATCAATTCCTCCCTTGCTG TATTCTGAAATATTTGACATGTTCGGCGGTGCCTGCTGCCGGATAAGCGA CCGCTCCCCTCCCTCCGTCCCTCCCCCCCTCTCCATATAAAAACGTTAAT CTCTCTCTCCCTGCTTCCTTCTCTCTCCCTATCTCTCGTTCGCCTGTCTC TCTACAAACATTTATCTCTTTCTCCATCTCTCTACATAGCTCTTCCTCCC GGCCGCTTCAAAGATGTATACGTATATATGTACATCGCGTGCGAAACGGT TAGTGGTGAACAAAAAGCGGCTGTGGATGTCGTGATACAGAACAAGTTGG CGTAAGGTCCACCACCGCCGACCGAAAGTTTTGCTATCCATCGATCGCGA ACATGCACTTGCCCCGATCGATGGATTTGGTTTGTTTTTTTCCTTACTAT AACGTTCAACCCACAGTACTGCTTCGCAATCGATCGACTCTGTTTGGCTT TGGCTGTCCATAACATGCACCCTACACGGTGTTGGGTCAAGAGTTTCGGT TTCCAACAAAATAATCCGCCCATCTCCATGAAAGTCCAGCCCACACTCGA AATCAACAACAGCAAGAGCTTTCGACAACTTGATTTTAGTTTTTATATTT CCCCACCGCCTGCTCCAGGTCCCTTCGCTGCTCTCGAATGAAGCACCCGG TCGCCCCCCTCTCGCACAATTGACGTATTTTTCCGCAACAGCTCGCAATG TTTTCAAGTTAAAACCGGAAAAGACGCCGACCCGTGTTTAAGGATGCGAT GTTCACGGCAGCCGACACTCTTCTAACATGTTGGCCCACCGACCGTTGTC CTTGATCAACGAAAAATGCGCCGACTAAAATGTCGAAAGGCGGCGATGAA CGTTGCATGGCCGCACGGCCGATAGCTCTGTCACCTTTCTCCCCACTCAT ATTTTCCTTTGTGCGTTCGGAAACAAAATATGCGCCGGCTCCTGCGTTCA AAGACGGCGATGAACGCGAGAGCCAACCGCTAACTCACGTTTCCCCCCAG TTGTCATCCTAAACATCAGGAAAGAAAAGGAAACCAGAAGATCATTCGAT CAATGTTCATTAACCTTACTGCCCTTTCCTTGTTTGACATTAAAATATGC CCCGACTGCAATGTCGAAAGACGGCGATGAACGAAATGGCGCAGAGGGGC AAGAAGGCCACCGACGCTGCCGTGCGAGCAGCGCAGCAGACCAGCACGGC GATGCAGTACTTGCAGATGCAGCAGCAGCAGCTTTCGGTGAGACGGCTGG AAGTGGCTTGAAGCGACATCGACTGATTGACAAAGACCTAGCGATAGACG AAGACATACCATTGATTCAGACCGATCGGTTGATGCAGCAGCCGGGGCTC TCGGTGAAGCCAGCCTTATTCCCACTGTGCCTGCATTTTCGTCTGAAAAT ACTAAGATCTGCGTATTTCGTTTTTCAACAAAGCCCTTTTGCTCATTCTG CACCGAAAATAGGCTTGATGCTCGTTTTGCGCAGAAAGTGCAAAATGTGC TGTTTGGACCAAGTAATTTGTGCTCAGAAAAAAAATGTCGATTGTGTGCA CGCTACAAGCAAGGTTAGCAGAATGGGGACCGGCCCAGGTAAGGCAGGCA GCCACGAGAGGAGAGGAGAGGGACGAAGAGAGCAGATGTCAACCGAAGGA GCGATGTAGACCGATCGATCGCTGAAGATATACCAATCGATCGATTAGCG TCGTACCAACAAGGGTGAAATTAGTTCGACACCTGTGACTTGCGTTAATG GTTCAAGATGTTAGGTAGCTGTCGTTTCAAGTCTCCGCGTTTTCGTGGCA GCGAGGACAAACCTCTAAAGCGGCGTCGCACGTCCTGGTCAATGTCTTGG TTGACTATCTGTGGTCTTAACATTTCTTGACGGCGGTGTGTTACTTCTGT TTTCGCTTGCGTGTGAATCGTGGTTTGGGTATGAAGGTGTCAGCCCAGCG AGCACAGATATTTCATACAGCGTAGATGTCTTGATTGAGTGTTCGTGGTT GCGACGTTTATTTGCACCTGCTGATTTGCGGGCGTGTGTATCTCAGTCAG CGGTGGGTCCCGGGGGTTCATTAATAATCAAGAACAAGGTCCCCCAGGCA CGCAGGAGGGCAATACTTTCGCGGCCAAAGGTTGTGCCTTCGGAATGCTT GACGTCGGTTCATTTTTGGCGCCCTGATTTTCTTTTATGGTCTTGTGTCA GCTACTACAAGTCTCCATGAATGAAATTCCCCTTGTGTGATGCGTGTCTC CTGTTCCTATATGTTTCCCTGCGTCGTGCGCAGGACAGGCACTCGGTTGA TTGGTTTGCATGCGCGGTGAAACGTCAACTGAGGGCGTCCAGCTCTCCTC AGGCGGCAAGGCAGTCGACAGTGTGGTTGCCCTTACATTTGTCTCGCGCC CCCAAATCCTCCAACTATTCCCTACATCTTACCCGAGCAGGCGCTGCAGA ACCAGCTTTACGGGGGACAGCCGTCACCATGGAACTTCGGTGCCGCCTAC CGTATCCCCGACACCAACATCAACCTTTCGGGTACCTACCAGCAGGGCAA GGCAAATCTCCAGGCAAGAGATCAAGCGAGATTTTCGAATGAAATTTCCG CGTCGTGAGGTTGGAACACCGAAAGAAACTCGGGAAGCCGCGTGTATGGG GGGGATATCCAAAACACAAAAAACGGGGTTGCGGAAGAAATACTGCTGTT CCTTCAAATTCTTGCAGGAGAAAATTCACGGCGCCTCCAATTTGAGGTAA TAAATAGTCACAAGCCTCACAGTTTTGTTCCCGACAAACGATGCCGTCGT TTTTTTGCATGCAACAAGCTGTTGGTCGTTTTTTGCTGGTTAGGATCATT TTATAGGACTAGGGTTAGACTAGAGGGTGTGGGGTAAGTTGTTGGCGTAT TTAGGTCGTCATTGCCTATACTCGAGGGTTGCGGCTGGTCGGGTATCTAA AAAGTTCCCTTCACGCAACAATCTAGGTCTGCTATTACTAGACCTACTCT GCTACATGCCGCACATATTTCTTTCTTTCGCGGTCTCGTTCCGTTGCCTT CCGCCCTGCATCTAGTCCAGTGTCCAACCCTCGACAGGTGATCGATCCCT CCAATATTTGGCTACAACCCCCGCCCATGCTTTCTCTGTTTCGTTCTGAC TTTTGATGAACCCCTTCAGTGTTTGTATGTCGCGCCCCCTTCTTTTCTCT TGTGTATTTTTGACATTTTTGACTAGTGATCAATCCCGTCAATCCTTGGC TGACTTACCCGCCAGTCATTTCGTCCGCCCTATCGCTGCAGTACACCCAT GTGTCTCGGTTTGTCTTATCGCTGTCGTTATCGTTGTCTGTCTTGTGTAT TCGGCGTACTGAACAGATGACCTGCGTTCCGGACGAGTACAGCTCGATGT TGGGGTCGCAAGGCTTTACACACGGGGTCGGTCCGGGCAACCTCGGCCTC TCAGTAAACCTCAGCATTTAACACTATCCTTGGCTTCTCGGATTTTTGGG CTTTCAAACCTGAGCATTTCAACACTCCTTGGCTTCTTGGCCCATCGTCA AAACCCAGCATTCGATGCCCTTTAAGGCGGCGTGCATCATCACACCTTCA CTGGAGCTGCTTGAGCTACACCCTGGAGTGTGCCACGTACTTTTGGTGTA TCACTGGAACTTGGATTGGCTGTTGATGTATTCGGCGATGATACGGTTGT TCTGGCACCCGGGTGGAGACATTACTAGTCGTACCCGACTAAGCGCTGCT GCGCAGACAGTTGTGCGTGCTGTTGCCGGCTTGGTGTCCTCGACCAGCAT GTACCCAAGGTGCGGGATGAGCATGCTTGCCCGGCACGTTTTGGAGGATG ATCGCATGCTCTACCGGGCAACCCATAGTCGGGAATGGTCATTTTGTTGC GCCTCATCGTGCTCGGGCTGCGTGTGCTAGGATACCGCAAGTGGTGTTGA TTGTGCCGTTTGCGAGAGATGGTCGGGGGCTTAAATGTCGCCGTTCCAAC TCGTCCTTCTTTGCCAGCCCACACGCAGTCGTTCCTCTGGGGTGTTGAGA TGTCGTAGATGTAACGCGTGGACAAACCAGTACGCACGCGATCTCCGCTT GCTGGGCACACGCTGGTGACAGGATCCACTGCTCTTAGAAGCTGTCAGCT TTTGCCAGTGTGAGACAATGCTTGGTTGTTGGGGGCCTTCTCTTCTTTGT GAGCACTGGTGCACCACTAGAAACTTGCATGTTATGTGCTTCCCCAATAG GAAAGGGAGGGCCTGATTTACTGGTAGACTAGTCGTCAGAACGACAGATT GTGCCGTTTTTGGAACTGACATGATGTGGCGCGCGGGATTAAGTGAAGCA ACACAAGTTGAAAGAGACTTGGAGCCTCTGCAGCTTTCAGACACCAAGCG GCTCGCGAACGGAACAAACAC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig12:535152..544372-

>mRNA_P-fluviatile_contig12.1358.1 ID=mRNA_P-fluviatile_contig12.1358.1|Name=mRNA_P-fluviatile_contig12.1358.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1050bp|location=Sequence derived from alignment at P-fluviatile_contig12:535152..544372- (Porterinema fluviatile SAG_2381)
ATGAGGGCGGCAGCGTTGATGTTGGTGGGGCTGGGGGGCGCAGCGGCGGC
GGCGGCGGACTCGGTTAGCGCCTACCACATGAGCTGCCACGGGATGAGGG
CGGCAGCGTTGATGTTGGTGGGGCTGGGGGGCGCAGCGGCGGCGGCGGCG
GACTCGGTTAGCGCCTACCACATGAGCTGCCACGGGGTTTACAACAAGAT
CGCACGACAAGCGATGGGGGACATCAAGGAGTTGCAGTCGAGGGTCGACG
CGGGGGAGATGTGTCCAGCGCTGGGACAGAAGGCCGACAGCATTTGCAAC
CAGGTTTACAACAAGATCGCACGACAAGCGATGGGGGACATCAAGGAGTT
GCAGTCGAGGGTCGACGCGGGGGAGATGTGTCCAGCGCTGGGACAGAAGG
CCGACAGCATTTGCAACCAGGCACTGGAGCAGTTCAGCACGGATGCGGCC
GACACGGAGAACGACCCTGCCAAGGAGGCCATCTTCGACGAGAAGGCACT
GGAGCAGTTCAGCACGGATGCGGCCGACACGGAGAACGACCCTGCCAAGG
AGGCCATCTTCGACGAGAAGGTAGAGGAGCTGGAAACGGCGTTGGACCTG
CCGCTGCAGCTGGTCTACATGAAGCAGCTCACGCTGCTACGAGAGAAGGC
GCTTCAGAGGTACAAGACGCTCGCCAAGGGAACCGAGACCAGCGACTACC
AGGTAGAGGAGCTGGAAACGGCGTTGGACCTGCCGCTGCAGCTGGTCTAC
ATGAAGCAGCTCACGCTGCTACGAGAGAAGGCGCTTCAGAGGTACAAGAC
GCTCGCCAAGGGAACCGAGACCAGCGACTACCAGGCGATGGTAGCCGCGG
ATCAGTGGTTCGTGAAAGAGGCCGAAGCGAGCACTCGGGCGGGGGCTTCG
TGGGAATTCGCCGCAGTGCGAAACAGCCTCAGGCGATGGTAGCCGCGGAT
CAGTGGTTCGTGAAAGAGGCCGAAGCGAGCACTCGGGCGGGGGCTTCGTG
GGAATTCGCCGCAGTGCGAAACAGCCTCAGACGGCGATGAACGGCGATGA
back to top