mRNA_P-fluviatile_contig12.1348.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1348.1
Unique NamemRNA_P-fluviatile_contig12.1348.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig12.1348.1 vs. uniprot
Match: A0A6H5KAT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT8_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.050e-46
Identity = 88/139 (63.31%), Postives = 116/139 (83.45%), Query Frame = 3
Query:    3 MAFFESFTSTVEAAQESLEIMR-SAPLREAEMALKDYEASRGDVDYLKIAREAAMKAVVLG-ALDVKLSAAIIAVSAGYVYKTKMDSPSDAKYFTVNGTLSNIVQALAPFWANPSCAATADGKKTLSFLLNLVSCVCVL 413
            M FF SFT+ +EAA++ +E+MR +APL EA+MALK++EAS+G+V +L+ A   AM A+V G  LDVKL+AA+IAVSAGYV+ +K+D PS+AK FTVNGTL+N+V   AP W++PSCA+TADGKKT+SFLLN+VSCV VL
Sbjct:   33 MVFFASFTAGLEAARQGIELMRVNAPLEEAQMALKNFEASKGNVRFLETAHSKAMTALVQGHTLDVKLNAAVIAVSAGYVHMSKVDCPSEAKDFTVNGTLANVVSHFAPTWSDPSCASTADGKKTVSFLLNIVSCVLVL 171          
BLAST of mRNA_P-fluviatile_contig12.1348.1 vs. uniprot
Match: D7G450_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G450_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 7.640e-44
Identity = 82/135 (60.74%), Postives = 109/135 (80.74%), Query Frame = 3
Query:    3 MAFFESFTSTVEAAQESLEIMRSAPLREAEMALKDYEASRGDVDYLKIAREAAMKAVVLG-ALDVKLSAAIIAVSAGYVYKTKMDSPSDAKYFTVNGTLSNIVQALAPFWANPSCAATADGKKTLSFLLNLVSCV 404
            M FF SFT+ +EAAQ+ +EIMRSAPL EA M+LK++E S+G+V +L+ A   A+ A+V G  LDVKLSAA+IAVSAGY++ +K+D PS+AK FTVN TL+N++   AP W++PS A+ ADGKKT+SFLLN+VSCV
Sbjct:   58 MEFFASFTAGLEAAQQGIEIMRSAPLEEARMSLKNFEGSKGNVRFLETAHSKALTALVQGHTLDVKLSAAVIAVSAGYIHMSKVDCPSEAKDFTVNATLANVISHFAPTWSDPSRASKADGKKTVSFLLNIVSCV 192          
BLAST of mRNA_P-fluviatile_contig12.1348.1 vs. uniprot
Match: D8LD84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD84_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 2.270e-40
Identity = 83/136 (61.03%), Postives = 102/136 (75.00%), Query Frame = 3
Query:    9 FFESFTSTVEAAQESLEIMRSAPLREAEMALKDYEASRGDVDYLKIAREAAMKAVVLG-ALDVKLSAAIIAVSAGYVYKTKMDSPSDAKYFTVNGTLSNIVQALAPFWANPSCAATADGKKTLSFLLNLVSCVCVL 413
            FF+SFT  + A    +E + SAPL+EAEMALK++ AS G+V +L +A   AM A+V G  +DVKLSAA+IAVSAGYV+ +K DSP +AK FTVNGTL NIV  LAP W + S AA+ADG K L+FLLNLVSCVC L
Sbjct:  273 FFKSFTQGLAATHRGIETLMSAPLKEAEMALKNFTASGGNVRFLDVAHSKAMTALVQGHTVDVKLSAAVIAVSAGYVFASKTDSPLEAKQFTVNGTLVNIVDVLAPLWVDSSRAASADGPKVLAFLLNLVSCVCAL 408          
BLAST of mRNA_P-fluviatile_contig12.1348.1 vs. uniprot
Match: A0A6H5K720_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K720_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 7.900e-38
Identity = 81/140 (57.86%), Postives = 102/140 (72.86%), Query Frame = 3
Query:    9 FFESFTSTVEAAQESLEIMR----SAPLREAEMALKDYEASRGDVDYLKIAREAAMKAVVLG-ALDVKLSAAIIAVSAGYVYKTKMDSPSDAKYFTVNGTLSNIVQALAPFWANPSCAATADGKKTLSFLLNLVSCVCVL 413
            FF+SFT  +EA    ++ +     SAPL+EAEMALK++ AS+G V +L  AR  A+ A+V G  +DVKLSAA+IAVSAGYV+ +K +SP +AK FTVNGTL NIV  LAP W + S  A+ADG K L+FLLNLVSCVC L
Sbjct:  157 FFKSFTQGLEATHRGIQTLMAMQLSAPLKEAEMALKNFTASKGQVRFLDEARSKALTALVQGHTVDVKLSAAVIAVSAGYVFASKTESPLEAKQFTVNGTLVNIVDVLAPLWVDSSRGASADGPKVLAFLLNLVSCVCAL 296          
BLAST of mRNA_P-fluviatile_contig12.1348.1 vs. uniprot
Match: A0A6H5K3B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B9_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 8.260e-36
Identity = 72/138 (52.17%), Postives = 100/138 (72.46%), Query Frame = 3
Query:    3 MAFFESFTSTVEAAQESLEIMRSAPLREAEMALKDYEASRGDVDYLKIAREAAMKAVVLGA-LDVKLSAAIIAVSAGYVYKTKMDSPSDAKYFTVNGTLSNIVQALAPFWANPSCAATADGKKTLSFLLNLVSCVCVL 413
            M FF +F S++EA Q  ++++R+ PL EA M+LK++EAS  DVD LK A   A  A+V G+ L++K +AA I +SAGYV+K K  SPS+AK  TV G+L+N+V+  A  WA+PS + T + +K LSFLLN+VSCVCVL
Sbjct:   98 MLFFTTFMSSIEATQHGVDVLRNGPLEEAHMSLKEFEASGDDVDELKEASRKARTALVTGSTLEIKFTAATITISAGYVHKMKAGSPSEAKQATVKGSLANVVKHFATIWADPSRSGTVEERKVLSFLLNVVSCVCVL 235          
BLAST of mRNA_P-fluviatile_contig12.1348.1 vs. uniprot
Match: A0A6H5KIE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.090e-21
Identity = 56/102 (54.90%), Postives = 77/102 (75.49%), Query Frame = 3
Query:    3 MAFFESFTSTVEAAQESLEIMRSAPLREAEMALKDYEASRGDVDYLKIAREAAMKAVVLG-ALDVKLSAAIIAVSAGYVYKTKMDSPSDAKYFTVNGTLSNI 305
            M FF SFT+ +EAA++ +E+MR+APL EA+MALK++EAS+G+V +L+ A   AM A+V G ALDVKL+AA+IAVSAGYV+ +K+ S S A    V   LS +
Sbjct:   50 MVFFASFTAGLEAARQGIELMRNAPLEEAQMALKNFEASKGNVRFLETAHSKAMTALVQGHALDVKLNAAVIAVSAGYVHMSKVSS-SFAFIMVVKAILSQV 150          
BLAST of mRNA_P-fluviatile_contig12.1348.1 vs. uniprot
Match: A0A6H5JWQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ1_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.470e-18
Identity = 39/57 (68.42%), Postives = 49/57 (85.96%), Query Frame = 3
Query:  243 TKMDSPSDAKYFTVNGTLSNIVQALAPFWANPSCAATADGKKTLSFLLNLVSCVCVL 413
            +K+D PS+AK FTVNGTL+N+V   AP W++PSCA+TADGKKT+SFLLN+VSCV  L
Sbjct:    2 SKVDCPSEAKDFTVNGTLANVVSHFAPTWSDPSCASTADGKKTVSFLLNIVSCVLAL 58          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KAT8_9PHAE1.050e-4663.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G450_ECTSI7.640e-4460.74Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LD84_ECTSI2.270e-4061.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K720_9PHAE7.900e-3857.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3B9_9PHAE8.260e-3652.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIE6_9PHAE1.090e-2154.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWQ1_9PHAE3.470e-1868.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:458238..459121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.1
Seed ortholog evalue1.5e-36
Seed eggNOG ortholog2880.D7G450
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_001360.1
Exons3
Model size415
Cds size411
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1348.1prot_P-fluviatile_contig12.1348.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 458238..459119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815492.3378947-CDS-P-fluviatile_contig12:458237..4584021622815492.3378947-CDS-P-fluviatile_contig12:458237..458402Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 458238..458402 -
1693562052.9032438-CDS-P-fluviatile_contig12:458237..4584021693562052.9032438-CDS-P-fluviatile_contig12:458237..458402Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 458238..458402 -
1622815492.3498206-CDS-P-fluviatile_contig12:458683..4588631622815492.3498206-CDS-P-fluviatile_contig12:458683..458863Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 458684..458863 -
1693562052.9217894-CDS-P-fluviatile_contig12:458683..4588631693562052.9217894-CDS-P-fluviatile_contig12:458683..458863Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 458684..458863 -
1622815492.360412-CDS-P-fluviatile_contig12:459053..4591191622815492.360412-CDS-P-fluviatile_contig12:459053..459119Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 459054..459119 -
1693562052.9337757-CDS-P-fluviatile_contig12:459053..4591191693562052.9337757-CDS-P-fluviatile_contig12:459053..459119Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 459054..459119 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815492.371441-UTR-P-fluviatile_contig12:459119..4591211622815492.371441-UTR-P-fluviatile_contig12:459119..459121Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 459120..459121 -
1693562052.941866-UTR-P-fluviatile_contig12:459119..4591211693562052.941866-UTR-P-fluviatile_contig12:459119..459121Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 459120..459121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1348.1

>prot_P-fluviatile_contig12.1348.1 ID=prot_P-fluviatile_contig12.1348.1|Name=mRNA_P-fluviatile_contig12.1348.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=137bp
MAFFESFTSTVEAAQESLEIMRSAPLREAEMALKDYEASRGDVDYLKIAR
EAAMKAVVLGALDVKLSAAIIAVSAGYVYKTKMDSPSDAKYFTVNGTLSN
IVQALAPFWANPSCAATADGKKTLSFLLNLVSCVCVL
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mRNA from alignment at P-fluviatile_contig12:458238..459121-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1348.1 ID=mRNA_P-fluviatile_contig12.1348.1|Name=mRNA_P-fluviatile_contig12.1348.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=884bp|location=Sequence derived from alignment at P-fluviatile_contig12:458238..459121- (Porterinema fluviatile SAG_2381)
ACATGGCGTTCTTCGAGAGTTTCACGTCCACCGTAGAGGCTGCCCAGGAG AGCCTCGAGATCATGAGGGTACGTACTACTGTTGCGCGAGACCACCGGCT GCCCGGTAACGACCGTTGTTTCTTAAAGATGTAGGATTGATACCCTGGTT GTCCCACGAGATATGATCTGGATCTCGTGTGTACCTGCGTGGTATATATT TCATCGAAGCTTGTGAAGCTAAAAACCAACGGTTTTCTTGGCGAACCTGC AATCACAGAGTGCACCCCTACGGGAGGCGGAGATGGCGCTGAAGGATTAC GAGGCCAGCCGTGGTGACGTGGATTATCTAAAGATTGCCCGCGAAGCGGC AATGAAAGCTGTTGTCTTGGGCGCGCTCGACGTCAAGCTTAGCGCGGCAA TCATTGCTGTTTCGGCCGGCTACGTGTACAAGACCAAGGCGAGTACGCTC ACCTTCGCCGTACTTGTGAACCGTCAAGTATTGTGGATGCACCTGCCCCC TTCCCCCCACCCCATTTTTTCGCGCGGCCAGGAGCTTCAGTCAGTTCGGA AGTCAAGGCTTTGTCTATGCATTCGCCCTCGCTCAATTTTGAGACATCGT TGGCAAATCCTTTACCTCGGCGCGAAAACAGCTTTGTTGCCTTTCGATAG CTCAAGAGTTTGTCACACCTCACTCTAACCGCTGCTTGTGACGCTCGTGC CAAATCTATGCCCCGTCAGATGGACTCTCCAAGCGATGCGAAGTACTTCA CCGTGAACGGAACGCTGTCCAACATCGTCCAGGCGCTCGCGCCGTTCTGG GCCAACCCCTCTTGTGCCGCCACGGCCGACGGGAAGAAGACCTTATCGTT CCTGCTGAACCTCGTGTCCTGCGTGTGCGTGCTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:458238..459121-

>mRNA_P-fluviatile_contig12.1348.1 ID=mRNA_P-fluviatile_contig12.1348.1|Name=mRNA_P-fluviatile_contig12.1348.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=822bp|location=Sequence derived from alignment at P-fluviatile_contig12:458238..459121- (Porterinema fluviatile SAG_2381)
ATGGCGTTCTTCGAGAGTTTCACGTCCACCGTAGAGGCTGCCCAGGAGAG
CCTCGAGATCATGAGGATGGCGTTCTTCGAGAGTTTCACGTCCACCGTAG
AGGCTGCCCAGGAGAGCCTCGAGATCATGAGGAGTGCACCCCTACGGGAG
GCGGAGATGGCGCTGAAGGATTACGAGGCCAGCCGTGGTGACGTGGATTA
TCTAAAGATTGCCCGCGAAGCGGCAATGAAAGCTGTTGTCTTGGGCGCGC
TCGACGTCAAGCTTAGCGCGGCAATCATTGCTGTTTCGGCCGGCTACGTG
TACAAGACCAAGAGTGCACCCCTACGGGAGGCGGAGATGGCGCTGAAGGA
TTACGAGGCCAGCCGTGGTGACGTGGATTATCTAAAGATTGCCCGCGAAG
CGGCAATGAAAGCTGTTGTCTTGGGCGCGCTCGACGTCAAGCTTAGCGCG
GCAATCATTGCTGTTTCGGCCGGCTACGTGTACAAGACCAAGATGGACTC
TCCAAGCGATGCGAAGTACTTCACCGTGAACGGAACGCTGTCCAACATCG
TCCAGGCGCTCGCGCCGTTCTGGGCCAACCCCTCTTGTGCCGCCACGGCC
GACGGGAAGAAGACCTTATCGTTCCTGCTGAACCTCGTGTCCTGCGTGTG
CGTGCTCATGGACTCTCCAAGCGATGCGAAGTACTTCACCGTGAACGGAA
CGCTGTCCAACATCGTCCAGGCGCTCGCGCCGTTCTGGGCCAACCCCTCT
TGTGCCGCCACGGCCGACGGGAAGAAGACCTTATCGTTCCTGCTGAACCT
CGTGTCCTGCGTGTGCGTGCTC
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