mRNA_P-fluviatile_contig12.1344.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1344.1
Unique NamemRNA_P-fluviatile_contig12.1344.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:420714..421403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size220
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.649883-CDS-P-fluviatile_contig12:420715..4207751622815485.649883-CDS-P-fluviatile_contig12:420715..420775Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 420716..420775 -
1693562042.8137338-CDS-P-fluviatile_contig12:420715..4207751693562042.8137338-CDS-P-fluviatile_contig12:420715..420775Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 420716..420775 -
1622815485.6633255-CDS-P-fluviatile_contig12:421247..4214031622815485.6633255-CDS-P-fluviatile_contig12:421247..421403Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 421248..421403 -
1693562042.8221474-CDS-P-fluviatile_contig12:421247..4214031693562042.8221474-CDS-P-fluviatile_contig12:421247..421403Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 421248..421403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1344.1prot_P-fluviatile_contig12.1344.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 420716..421403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1344.1

>prot_P-fluviatile_contig12.1344.1 ID=prot_P-fluviatile_contig12.1344.1|Name=mRNA_P-fluviatile_contig12.1344.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=72bp
GCGARRIFGSQFRFEIRRNIIIALPLVLSRCLLVCFGRTRGTLGLQVQLF
PQLIRTSGILRPHSPELWSPTI
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mRNA from alignment at P-fluviatile_contig12:420714..421403-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1344.1 ID=mRNA_P-fluviatile_contig12.1344.1|Name=mRNA_P-fluviatile_contig12.1344.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=690bp|location=Sequence derived from alignment at P-fluviatile_contig12:420714..421403- (Porterinema fluviatile SAG_2381)
GGCTGTGGTGCAAGGCGTATCTTCGGCAGCCAGTTTCGCTTTGAGATCCG
ACGAAACATCATCATCGCTCTCCCTCTTGTCCTCTCCCGCTGTCTGCTTG
TATGCTTTGGCCGGACGCGTGGCACGCTCGGACTTCAGGTCCAGCTTTTC
CCCCAGGTAGGTGTGTTGGACGTCGGCCAGTGTGCTCACTTTCTGTTGTT
CGTAGACTTGTAGTGCACAAGAGTCGGTGGTAGTCGAAGCCACTTTCGCA
CAGGGCACCTTGCTGTTGCTCGTCAAACTCGTCGTACTGTAGAATTAGCA
GGCCTCGTTTTTGACCATAGTTCCAGGTACCGTGTGTGGCATGATAACCG
CATTGTAATACCAAGTGTCGGGCGAGGTACTAGATGAGGGGCCAAACTCG
ACGTAATGGCGGCTTCAACTTCACTGATTGGTCATGGCCGCGAAAAACAA
AACAAAACGAAACAAAAACACGGAAGGCCTCACTTCAGCATTCATTTCTC
GTCCGTTGCAGTGCTTACAAGTAGTGATATTCTTGATTGCTGCCATCGGT
CTCGTCGGCGGAATTGCTTACTAATGTGATGAAGCCGTATTTTGCCCGCC
ATCGCCCTGTTTCATGAACCCGTGGCAGCTGATAAGAACGTCAGGGATTT
TGCGGCCGCACTCACCGGAGCTGTGGTCACCAACAATTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:420714..421403-

>mRNA_P-fluviatile_contig12.1344.1 ID=mRNA_P-fluviatile_contig12.1344.1|Name=mRNA_P-fluviatile_contig12.1344.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=432bp|location=Sequence derived from alignment at P-fluviatile_contig12:420714..421403- (Porterinema fluviatile SAG_2381)
GGCTGTGGTGCAAGGCGTATCTTCGGCAGCCAGTTTCGCTTTGAGATCCG
ACGAAACATCATCATCGCTCTCCCTCTTGTCCTCTCCCGCTGTCTGCTTG
TATGCTTTGGCCGGACGCGTGGCACGCTCGGACTTCAGGTCCAGCTTTTC
CCCCAGGGCTGTGGTGCAAGGCGTATCTTCGGCAGCCAGTTTCGCTTTGA
GATCCGACGAAACATCATCATCGCTCTCCCTCTTGTCCTCTCCCGCTGTC
TGCTTGTATGCTTTGGCCGGACGCGTGGCACGCTCGGACTTCAGGTCCAG
CTTTTCCCCCAGCTGATAAGAACGTCAGGGATTTTGCGGCCGCACTCACC
GGAGCTGTGGTCACCAACAATTCTGATAAGAACGTCAGGGATTTTGCGGC
CGCACTCACCGGAGCTGTGGTCACCAACAATT
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