mRNA_P-fluviatile_contig12.1343.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1343.1
Unique NamemRNA_P-fluviatile_contig12.1343.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig12.1343.1 vs. uniprot
Match: A0A6H5KFB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB9_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 1.070e-88
Identity = 143/179 (79.89%), Postives = 158/179 (88.27%), Query Frame = -2
Query:    3 SCRLFMPVWSLDELFECRQAVYPHVPETDLRERFGKVGGVARAVYDAKKLSQVCLKMESAASNMDLGVLQQILSRGFDDADRFSTDRSGDALLHLSPIPETGFEESSVDFASEYAHNVTLGELPKKEFAALASFVRAAFANDELGAKVVAERAAGFETIAHQTIGGAGERQAFNVRILS 539
            S R +MP W LDELF CRQAV+PHVPETD+RERF KVGGVARAV+DA+KL QVCLKM++AASNMDL +LQQILSR  DD D+ STDRSGDALLHL PIPETGFEE SVDFASE+AH VTLGELPKKEFA LASFV AAFA+DELG KV AERAAGFETIAH+TIGGA E+Q F++RILS
Sbjct:  201 SRRFYMPPWCLDELFRCRQAVFPHVPETDVRERFSKVGGVARAVFDAEKLKQVCLKMQAAASNMDLNLLQQILSRSRDDVDQVSTDRSGDALLHLLPIPETGFEEFSVDFASEFAHIVTLGELPKKEFAPLASFVGAAFAHDELGDKVTAERAAGFETIAHKTIGGASEQQWFDMRILS 379          
BLAST of mRNA_P-fluviatile_contig12.1343.1 vs. uniprot
Match: A0A090B923_HYAAE (RxLR effector candidate protein (Fragment) n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=A0A090B923_HYAAE)

HSP 1 Score: 58.9 bits (141), Expect = 5.560e-7
Identity = 43/114 (37.72%), Postives = 58/114 (50.88%), Query Frame = -2
Query:  198 RLFMPVWSLDELFECRQAVYPHVPETDLRERFGKVGGVARAV--YDAKKLSQVCLKMESAASNMDLGVLQQILSRGFDDADRFSTDRSGDALLHLSPIPETGFEESSVDFASEY 533
            RLFMPVWS  E+F+CR+ +Y + P   + +R+ K GGVAR V  Y   K  Q  LK     SN+   +   + S G +      +D S   LLH    P+  F    +DFAS Y
Sbjct:  288 RLFMPVWSKQEIFKCRELLYSNTPVEIVEKRYMKWGGVARYVLQYAEDKALQKVLKEAITKSNLQTILTASVESSGVE------SDVSH-RLLHFRVNPD--FCYKCLDFASVY 392          
BLAST of mRNA_P-fluviatile_contig12.1343.1 vs. uniprot
Match: M4BU89_HYAAE (RxLR effector candidate protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BU89_HYAAE)

HSP 1 Score: 58.9 bits (141), Expect = 5.900e-7
Identity = 43/114 (37.72%), Postives = 58/114 (50.88%), Query Frame = -2
Query:  198 RLFMPVWSLDELFECRQAVYPHVPETDLRERFGKVGGVARAV--YDAKKLSQVCLKMESAASNMDLGVLQQILSRGFDDADRFSTDRSGDALLHLSPIPETGFEESSVDFASEY 533
            RLFMPVWS  E+F+CR+ +Y + P   + +R+ K GGVAR V  Y   K  Q  LK     SN+   +   + S G +      +D S   LLH    P+  F    +DFAS Y
Sbjct:  309 RLFMPVWSKQEIFKCRELLYSNTPVEIVEKRYMKWGGVARYVLQYAEDKALQKVLKEAITKSNLQTILTASVESSGVE------SDVSH-RLLHFRVNPD--FCYKCLDFASVY 413          
BLAST of mRNA_P-fluviatile_contig12.1343.1 vs. uniprot
Match: A0A6G0WL06_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WL06_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.630e-6
Identity = 40/115 (34.78%), Postives = 62/115 (53.91%), Query Frame = -2
Query:  198 FMPVWSLDELFECRQAVYPHVPETDLRERFGKVGGVARAVY--DAKKLSQVCLKMESAASNMD-LGVLQQILS--RGFDDADRFSTDRSGDALLHLSPIPETGFEESSVDFASEY 527
            F+PVW+L+EL+ECRQ  YPH   T L +R+   GGVAR  +  DAK L      M++A  ++D +  ++ I +  R + +A           LLH+    +  ++   VD AS+Y
Sbjct:  282 FLPVWTLNELYECRQECYPHFNITTLDDRYRIFGGVARPAFRTDAKMLD-----MDAALIDVDAVKCVRNIAAPTRIYQNAHM---------LLHIIVSDDGNYQFECVDIASKY 382          
BLAST of mRNA_P-fluviatile_contig12.1343.1 vs. uniprot
Match: A0A090BC21_HYAAE (RxLR effector candidate protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=A0A090BC21_HYAAE)

HSP 1 Score: 55.5 bits (132), Expect = 8.980e-6
Identity = 38/113 (33.63%), Postives = 53/113 (46.90%), Query Frame = -2
Query:  198 LFMPVWSLDELFECRQAVYPHVPETDLRERFGKVGGVARAV--YDAKKLSQVCLKMESAASNMDLGVLQQILSRGFDDADRFSTDRSGDALLHLSPIPETGFEESSVDFASEY 530
            LFMPVW+ +E++ CR  +Y   P   + +RF K GGVAR V  Y   K  Q  LK     +++ L V   + S G +             LLH     + G+E    DFA+ Y
Sbjct:  238 LFMPVWTEEEIYRCRDLLYSTTPVETVEKRFYKWGGVARYVLSYAKDKAKQKVLKEAIGQADLKLIVSASVESSGVEC-------NVSHRLLHFRVTRDFGYE--GFDFATNY 341          
BLAST of mRNA_P-fluviatile_contig12.1343.1 vs. uniprot
Match: M4C5N5_HYAAE (RxLR effector candidate protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C5N5_HYAAE)

HSP 1 Score: 55.5 bits (132), Expect = 9.060e-6
Identity = 42/114 (36.84%), Postives = 57/114 (50.00%), Query Frame = -2
Query:  198 RLFMPVWSLDELFECRQAVYPHVPETDLRERFGKVGGVARAV--YDAKKLSQVCLKMESAASNMDLGVLQQILSRGFDDADRFSTDRSGDALLHLSPIPETGFEESSVDFASEY 533
            RLFMPVWS  E+F+CR+ +Y + P   + +R+ K GGVAR V  Y   K  Q  LK     SN+   +   + S G +      +D S   LLH     +  F    +DFAS Y
Sbjct:  263 RLFMPVWSKQEIFKCRELLYSNTPVEIVEKRYMKWGGVARYVLQYAEDKALQKVLKETITKSNLQTILTASVESSGVE------SDVSH-RLLHFRVNRD--FCYKCLDFASVY 367          
BLAST of mRNA_P-fluviatile_contig12.1343.1 vs. uniprot
Match: G3C9U8_HYAAE (RxLR effector candidate (Fragment) n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=G3C9U8_HYAAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.580e-5
Identity = 49/179 (27.37%), Postives = 78/179 (43.58%), Query Frame = -2
Query:   24 SC-RLFMPVWSLDELFECRQAVYPHVPETDLRERFGKVGGVARAVYDAKKLSQVCLKMESAASNMDLGVLQQILSRGFDDADRFSTDRSG------DALLHLSPIPETGFEESSVDFASEYAHNVTLGELPKKEFAALASFVRAAFANDELGAKVVAERAAGFETIAHQTIGGAGERQA 539
            SC RL+MPVW+ +E+F CRQ +Y + P   +++R+ K GG+AR V      S+   +++ A +  DL ++  +           S + SG        LLH     +T     + DF S Y        L K+    L  F+ A+    +       ER   FE +A   +   G  +A
Sbjct:  287 SCKRLYMPVWTQEEIFRCRQLMYSNTPVEIVKDRYLKWGGIARYVLRYAMDSEKQEELDQAIAKADLKMILSV-----------SVESSGVESDFCHRLLHFRVNWKT-LRNEAFDFGSVYIAQKVFATLYKRTRRDLIDFIAASHQLSDFAG----ERGIFFERLALSMLSQGGSFEA 449          
BLAST of mRNA_P-fluviatile_contig12.1343.1 vs. uniprot
Match: A0A1Y1ICI3_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ICI3_KLENI)

HSP 1 Score: 54.7 bits (130), Expect = 1.720e-5
Identity = 40/135 (29.63%), Postives = 61/135 (45.19%), Query Frame = -2
Query:  171 FMPVWSLDELFECRQAVYPHVPETDLRERFGKVGGVARAVY-DAKKLSQVCLKMESAASNMDL-----GVLQQILSRGFD----------DADRFSTDRSGDALLHLSPIPETGFEESSVDFASEYAHNVTLGEL 527
            ++PVW+LDEL +CRQ  YPHV +    +RF + GGV R+V  D  +  +   +  SA   +DL       L+  +   F           D  R  + R GD +   +   + G  +  VD     A N  +GE+
Sbjct:  362 WLPVWTLDELLDCRQRFYPHVSQKQTEDRFEQFGGVVRSVLADPGRSFERLARSLSALEAVDLYRLGAAALKSAIRHAFAHIEATQDLEFDGFRLGSPRIGDLVFQRA---KEGRWQDLVDLLHAAASNPRVGEM 493          
BLAST of mRNA_P-fluviatile_contig12.1343.1 vs. uniprot
Match: M4BV81_HYAAE (Uncharacterized protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BV81_HYAAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.690e-5
Identity = 43/134 (32.09%), Postives = 63/134 (47.01%), Query Frame = -2
Query:  135 LFMPVWSLDELFECRQAVYPHVPETDLRERFGKVGGVARAVY-DAKKLSQVCLKMESAASNMDLGVLQ-QILSRGFDDADRFSTDRSGDALLHLSPIPETGFEESSVDFASEYAHNVTLGELPKKEFAALASFV 530
            LFMPVW+ +E+F CR+ +YPH P   + E + + GG+AR V   A+   Q  L  E+ A      +L   + SRG +            ALLH     E  F +     AS+Y  +   G L K++   L  F+
Sbjct:  196 LFMPVWTKEEIFRCRELMYPHTPVAIVDECYRRWGGIARYVLRHAEDPQQQGLLGEAIARIQLKAILDASVESRGDEGV-------LSHALLHFRIDRE--FSKECFTLASKYVTDGVYGTLYKRDKKELMKFL 320          
BLAST of mRNA_P-fluviatile_contig12.1343.1 vs. uniprot
Match: M4C4W8_HYAAE (Uncharacterized protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4W8_HYAAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.730e-5
Identity = 49/179 (27.37%), Postives = 77/179 (43.02%), Query Frame = -2
Query:   24 SC-RLFMPVWSLDELFECRQAVYPHVPETDLRERFGKVGGVARAVYDAKKLSQVCLKMESAASNMDLGVLQQILSRGFDDADRFSTDRSG------DALLHLSPIPETGFEESSVDFASEYAHNVTLGELPKKEFAALASFVRAAFANDELGAKVVAERAAGFETIAHQTIGGAGERQA 539
            SC RL+MPVW+ +E+F CRQ +Y + P   + +R+ K GG+AR V      S+   +++ A +  DL ++  +           S + SG        LLH     +T     + DF S Y        L K+    L  F+ A+    +       ER   FE +A   +   G  +A
Sbjct:   46 SCKRLYMPVWTQEEIFRCRQLMYSNTPVEIVEDRYLKWGGIARYVLRYAMDSEKQEELDQAIAKADLKMILSV-----------SVESSGVESDFCHRLLHFRVNWKT-LRNEAFDFGSVYIAQKVFATLYKRTRRDLIDFIAASHQLSDFAG----ERGIFFERLALSMLSQGGSFEA 208          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KFB9_9PHAE1.070e-8879.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A090B923_HYAAE5.560e-737.72RxLR effector candidate protein (Fragment) n=1 Tax... [more]
M4BU89_HYAAE5.900e-737.72RxLR effector candidate protein n=2 Tax=Hyaloperon... [more]
A0A6G0WL06_9STRA2.630e-634.78Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A090BC21_HYAAE8.980e-633.63RxLR effector candidate protein n=1 Tax=Hyaloperon... [more]
M4C5N5_HYAAE9.060e-636.84RxLR effector candidate protein n=1 Tax=Hyaloperon... [more]
G3C9U8_HYAAE1.580e-527.37RxLR effector candidate (Fragment) n=1 Tax=Hyalope... [more]
A0A1Y1ICI3_KLENI1.720e-529.63Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
M4BV81_HYAAE2.690e-532.09Uncharacterized protein n=2 Tax=Hyaloperonospora a... [more]
M4C4W8_HYAAE2.730e-527.37Uncharacterized protein n=2 Tax=Hyaloperonospora a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:419753..420292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size541
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.040663-CDS-P-fluviatile_contig12:419752..4201601622815489.040663-CDS-P-fluviatile_contig12:419752..420160Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 419753..420160 +
1693562047.3690321-CDS-P-fluviatile_contig12:419752..4201601693562047.3690321-CDS-P-fluviatile_contig12:419752..420160Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 419753..420160 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.0527263-UTR-P-fluviatile_contig12:420160..4202921622815489.0527263-UTR-P-fluviatile_contig12:420160..420292Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 420161..420292 +
1693562047.380057-UTR-P-fluviatile_contig12:420160..4202921693562047.380057-UTR-P-fluviatile_contig12:420160..420292Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 420161..420292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1343.1prot_P-fluviatile_contig12.1343.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 419753..420160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1343.1

>prot_P-fluviatile_contig12.1343.1 ID=prot_P-fluviatile_contig12.1343.1|Name=mRNA_P-fluviatile_contig12.1343.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=136bp
LLRILTLNACRSPAPPIVWCAIVSNPAARSATTLAPNSSFAKAARTKLAS
AANSFLGSSPKVTLWAYSLAKSTLDSSKPVSGIGDKCKSASPLLSVENRS
ASSNPRDRICCSTPRSIFEAALSILRQTCESFFAS*
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mRNA from alignment at P-fluviatile_contig12:419753..420292+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1343.1 ID=mRNA_P-fluviatile_contig12.1343.1|Name=mRNA_P-fluviatile_contig12.1343.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=540bp|location=Sequence derived from alignment at P-fluviatile_contig12:419753..420292+ (Porterinema fluviatile SAG_2381)
CTGCTCAGGATTCTCACATTAAACGCTTGCCGCTCGCCAGCGCCCCCAAT TGTTTGGTGCGCAATAGTTTCAAACCCGGCTGCGCGCTCAGCCACAACCT TGGCGCCCAATTCGTCGTTTGCGAAAGCAGCCCGGACAAAGCTTGCAAGT GCAGCAAATTCCTTCTTGGGAAGCTCTCCTAAAGTCACATTATGGGCGTA CTCACTTGCAAAATCGACACTGGACTCCTCGAAACCTGTTTCAGGTATAG GCGACAAGTGCAAAAGCGCGTCACCACTCCTATCGGTCGAAAACCGGTCA GCGTCATCGAACCCTCGCGACAGAATCTGTTGCAGCACACCTAGATCCAT ATTTGAAGCCGCACTTTCCATTTTAAGGCAAACCTGCGAGAGCTTTTTCG CATCGTAGACTGCTCTAGCTACGCCTCCAACCTTACCAAAACGTTCCCGC AAGTCGGTTTCTGGGACATGGGGGTAAACAGCTTGCCGACATTCGAACAG CTCATCCAGGCTCCACACTGGCATAAACAACCGACAGGAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:419753..420292+

>mRNA_P-fluviatile_contig12.1343.1 ID=mRNA_P-fluviatile_contig12.1343.1|Name=mRNA_P-fluviatile_contig12.1343.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=816bp|location=Sequence derived from alignment at P-fluviatile_contig12:419753..420292+ (Porterinema fluviatile SAG_2381)
CTGCTCAGGATTCTCACATTAAACGCTTGCCGCTCGCCAGCGCCCCCAAT
TGTTTGGTGCGCAATAGTTTCAAACCCGGCTGCGCGCTCAGCCACAACCT
TGGCGCCCAATTCGTCGTTTGCGAAAGCAGCCCGGACAAAGCTTGCAAGT
GCAGCAAATTCCTTCTTGGGAAGCTCTCCTAAAGTCACATTATGGGCGTA
CTCACTTGCAAAATCGACACTGGACTCCTCGAAACCTGTTTCAGGTATAG
GCGACAAGTGCAAAAGCGCGTCACCACTCCTATCGGTCGAAAACCGGTCA
GCGTCATCGAACCCTCGCGACAGAATCTGTTGCAGCACACCTAGATCCAT
ATTTGAAGCCGCACTTTCCATTTTAAGGCAAACCTGCGAGAGCTTTTTCG
CATCGTAGCTGCTCAGGATTCTCACATTAAACGCTTGCCGCTCGCCAGCG
CCCCCAATTGTTTGGTGCGCAATAGTTTCAAACCCGGCTGCGCGCTCAGC
CACAACCTTGGCGCCCAATTCGTCGTTTGCGAAAGCAGCCCGGACAAAGC
TTGCAAGTGCAGCAAATTCCTTCTTGGGAAGCTCTCCTAAAGTCACATTA
TGGGCGTACTCACTTGCAAAATCGACACTGGACTCCTCGAAACCTGTTTC
AGGTATAGGCGACAAGTGCAAAAGCGCGTCACCACTCCTATCGGTCGAAA
ACCGGTCAGCGTCATCGAACCCTCGCGACAGAATCTGTTGCAGCACACCT
AGATCCATATTTGAAGCCGCACTTTCCATTTTAAGGCAAACCTGCGAGAG
CTTTTTCGCATCGTAG
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