mRNA_P-fluviatile_contig12.1336.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1336.1
Unique NamemRNA_P-fluviatile_contig12.1336.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:335644..338034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1017
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1336.1prot_P-fluviatile_contig12.1336.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 336056..337963 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.4611692-UTR-P-fluviatile_contig12:335643..3360551622815485.4611692-UTR-P-fluviatile_contig12:335643..336055Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 335644..336055 -
1693562041.9528096-UTR-P-fluviatile_contig12:335643..3360551693562041.9528096-UTR-P-fluviatile_contig12:335643..336055Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 335644..336055 -
1622815485.510602-UTR-P-fluviatile_contig12:337963..3380341622815485.510602-UTR-P-fluviatile_contig12:337963..338034Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 337964..338034 -
1693562042.5692027-UTR-P-fluviatile_contig12:337963..3380341693562042.5692027-UTR-P-fluviatile_contig12:337963..338034Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 337964..338034 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.472207-CDS-P-fluviatile_contig12:336055..3364721622815485.472207-CDS-P-fluviatile_contig12:336055..336472Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 336056..336472 -
1693562042.3568513-CDS-P-fluviatile_contig12:336055..3364721693562042.3568513-CDS-P-fluviatile_contig12:336055..336472Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 336056..336472 -
1622815485.4838667-CDS-P-fluviatile_contig12:336635..3367141622815485.4838667-CDS-P-fluviatile_contig12:336635..336714Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 336636..336714 -
1693562042.5441551-CDS-P-fluviatile_contig12:336635..3367141693562042.5441551-CDS-P-fluviatile_contig12:336635..336714Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 336636..336714 -
1622815485.4995809-CDS-P-fluviatile_contig12:337925..3379631622815485.4995809-CDS-P-fluviatile_contig12:337925..337963Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 337926..337963 -
1693562042.5570202-CDS-P-fluviatile_contig12:337925..3379631693562042.5570202-CDS-P-fluviatile_contig12:337925..337963Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 337926..337963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1336.1

>prot_P-fluviatile_contig12.1336.1 ID=prot_P-fluviatile_contig12.1336.1|Name=mRNA_P-fluviatile_contig12.1336.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=178bp
MSKSCKTRPKTISASWTPQRVGGVARAQDLIQMTSRNKKALAETVVEKAS
SASELQEVERTKARLVEKIAADAEKMKQLKEALKVATNKAEGKKRSTLAV
VARAKAVKAARGARIAAAAATVEETEALEAAIMRDVAIVKVDRAKAIMEM
AEAAMLDGQSGERYRERLIRFMSIERR*
back to top

mRNA from alignment at P-fluviatile_contig12:335644..338034-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1336.1 ID=mRNA_P-fluviatile_contig12.1336.1|Name=mRNA_P-fluviatile_contig12.1336.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2391bp|location=Sequence derived from alignment at P-fluviatile_contig12:335644..338034- (Porterinema fluviatile SAG_2381)
AGCAGTGGGAGAACTCTGGCGAAGGAGCTGGCAGAGCAGCGAAGGAATCA
AGGGAAGGGAGTGACTGATAAATGTCGAAGAGCTGCAAGACCAGACCGAA
AACAATCAGGTGAATATCTGTTGGGGAACCGTCTGTCTCAGACGGCTGTT
CGACAAACTGATAAATGTCGAAGAGCTGCAAGACCAGACCGAAAACAATC
AGGTGAATATCTGTTGGGGAACCGTCTGTCTCAGACGGCTGTTCGACAAA
CCTTGGCCTGGCGGTGGGTTTGTCGACCAGCGGTGGCTCATGATCAGGTT
CATCGTACACTCCCCCCGCCCTTAACGTTAATGCGATTCTATAGGACAGA
CAAGTGTTCTCTCCAAGTACAGGTAAATGTGTAGCTGTCACACTTCACAC
GCTCAATCACGAGACACAGACTGCGTGGGGGGCACGCAGATATGAAAATA
TGTTGCGATAATCGCGGCCGCTACGCCCACAGGTGAACCTTTCTGTCAAT
AACAGGACACGAGACGTTTTGCCTATACCATGGCCGTACCGCGTCAACGT
TAGGGGGAGATCGAAGCACAGATGCCGTCAGGCGAGGCCAAAACGTTATT
TTTTGTTCGAACAAAACGATCGGAAATTCCTGTCCCGATTTCAACATCGG
TCGATTGTGCATTTTACGCCGTATCTGGGGTTGTAGACATTGCCAAAATC
CAATTCTTCGTATGGTGCAACTAGACAACCATCGCCCTAGTTTCCCAAAG
TTTTGAAGCAATCGGCTCAAATCCCATTGCGTGCCACACTGCTGTGGGTC
GTGTTCCCGGATGACGGACAGCGGCCGAAATCTGATCCAAAAATCGGCGA
GACCTGCACCTCTGCCGAATTTTCCTGAGATGACGGTTTCACGCCAAAAC
GCACCCTTCGACAGACGTATCAAGTAGGACTATATGGTGGTCTCTGCCAC
GTTTGAACTTAGGGTTAGGGTTAGGGTTAATGTCGGTGTCCACTTTTTCG
TCAGGCACCTGCTGTGTCTTGGGGGTTAAAGAATGCCTCTCACAGCCCGA
GAATGTCACTCCATTCCCGAGCCCCTGGGGAAGGCTCAGCGGTTTCAAAA
TTCACACTATTTTGGATAGGTCATTCCAACACAAGTATCGAGCAGCATGC
AGAAGGACAGATGCCAATTTCAAGTTGGGTCGGAGAAATCACAGGCTCCC
TCCGCGGGTTCAATCCGATGCTTAGGGTTAGAAAAAACTCTGTTTCACAT
GTATCAAGGGTTTGGAGCACGGGGTCACGACAACCTTGTGTCACGTGCGC
AAAAAATCGCTCGATCTCAGTGCCTCATGGACGCCGCAGCGAGTGGGGGG
GGTGGCTCGGGCGCAGGACCTGATCCAGATGACGTCAAGGAATAAAAAGG
TGTGTGCACGAGGAAGCTAGCCCTAAGTTGATCTCTCTCTTTGTCTCTGT
GTTTTTTTATTTTTATGGTTTCAAGGTCGGTATTGTGTACGAAAACAAAG
TGGTCCACGCTCTCCATTGCTGCGCTCTCATTCGCACCTTTTTTTTTATT
TTACGGTCACAGGCCTTGGCTGAAACGGTCGTAGAGAAGGCGAGCAGCGC
AAGCGAACTACAGGAGGTCGAAAGGACGAAAGCTCGTCTAGTCGAAAAGA
TTGCGGCGGATGCGGAGAAGATGAAACAACTCAAGGAAGCCTTGAAAGTT
GCCACAAACAAGGCTGAAGGCAAGAAAAGGTCGACACTTGCCGTGGTAGC
GCGGGCGAAAGCGGTCAAGGCCGCGAGGGGGGCGAGGATCGCGGCTGCGG
CGGCAACAGTAGAAGAGACGGAAGCACTTGAGGCAGCCATTATGCGTGAC
GTCGCAATAGTGAAGGTGGATAGGGCAAAGGCGATCATGGAGATGGCGGA
GGCGGCGATGTTGGATGGGCAAAGTGGTGAGAGATATCGTGAAAGGTTGA
TACGATTCATGTCGATTGAACGTCGGTAAATGTTGAAAGTTGAAAGTAAT
TGGGCGATTTTCAGTGTGCAGCAAAGATTAACCTCTCATCCGTAAAACAG
GGGGGGGAAACAGTCGGAAACGAGTCGGAGGCAACGGCTGCCAAGGCAAA
TGTGACCAAGGCGGAGGCCGAGGTACCGGTGGCAACGGCAGCAGCGGCGG
ATGCGGCGGCGAAGGCGGCGGATGCTAAGGTGAAGGCGGCGGCGGCGGAA
GATGCGGCTAAAGCGGCCGAAGATGCGGCAAAGGCGGCGGAAGATGCGGC
GGCGACAGCGGCATTTTCCAATACTATAGCCCAAAAAATTGGCAAGTGTT
CAATTTAAATTCCAAAGAGTAAACTCAATATCATATTATTCTGGCATCAC
TTATGTTATAGGAAGGCGCTAAGCTATGTGCTATATGAATA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig12:335644..338034-

>mRNA_P-fluviatile_contig12.1336.1 ID=mRNA_P-fluviatile_contig12.1336.1|Name=mRNA_P-fluviatile_contig12.1336.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1068bp|location=Sequence derived from alignment at P-fluviatile_contig12:335644..338034- (Porterinema fluviatile SAG_2381)
ATGTCGAAGAGCTGCAAGACCAGACCGAAAACAATCAGATGTCGAAGAGC
TGCAAGACCAGACCGAAAACAATCAGTGCCTCATGGACGCCGCAGCGAGT
GGGGGGGGTGGCTCGGGCGCAGGACCTGATCCAGATGACGTCAAGGAATA
AAAAGTGCCTCATGGACGCCGCAGCGAGTGGGGGGGGTGGCTCGGGCGCA
GGACCTGATCCAGATGACGTCAAGGAATAAAAAGGCCTTGGCTGAAACGG
TCGTAGAGAAGGCGAGCAGCGCAAGCGAACTACAGGAGGTCGAAAGGACG
AAAGCTCGTCTAGTCGAAAAGATTGCGGCGGATGCGGAGAAGATGAAACA
ACTCAAGGAAGCCTTGAAAGTTGCCACAAACAAGGCTGAAGGCAAGAAAA
GGTCGACACTTGCCGTGGTAGCGCGGGCGAAAGCGGTCAAGGCCGCGAGG
GGGGCGAGGATCGCGGCTGCGGCGGCAACAGTAGAAGAGACGGAAGCACT
TGAGGCAGCCATTATGCGTGACGTCGCAATAGTGAAGGTGGATAGGGCAA
AGGCGATCATGGAGATGGCGGAGGCGGCGATGTTGGATGGGCAAAGTGGT
GAGAGATATCGTGAAAGGTTGATACGATTCATGTCGATTGAACGTCGGTA
AGCCTTGGCTGAAACGGTCGTAGAGAAGGCGAGCAGCGCAAGCGAACTAC
AGGAGGTCGAAAGGACGAAAGCTCGTCTAGTCGAAAAGATTGCGGCGGAT
GCGGAGAAGATGAAACAACTCAAGGAAGCCTTGAAAGTTGCCACAAACAA
GGCTGAAGGCAAGAAAAGGTCGACACTTGCCGTGGTAGCGCGGGCGAAAG
CGGTCAAGGCCGCGAGGGGGGCGAGGATCGCGGCTGCGGCGGCAACAGTA
GAAGAGACGGAAGCACTTGAGGCAGCCATTATGCGTGACGTCGCAATAGT
GAAGGTGGATAGGGCAAAGGCGATCATGGAGATGGCGGAGGCGGCGATGT
TGGATGGGCAAAGTGGTGAGAGATATCGTGAAAGGTTGATACGATTCATG
TCGATTGAACGTCGGTAA
back to top