mRNA_P-fluviatile_contig12.1331.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1331.1
Unique NamemRNA_P-fluviatile_contig12.1331.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1331.1 vs. uniprot
Match: Q8QNH4_ESV1K (EsV-1-104 n=2 Tax=root TaxID=1 RepID=Q8QNH4_ESV1K)

HSP 1 Score: 314 bits (804), Expect = 1.720e-104
Identity = 143/258 (55.43%), Postives = 198/258 (76.74%), Query Frame = 1 
Query:   22 WFDD-EANTCNISPIHVVNTLKKLGATKSRIKAVRSRSDTCQFISEALSMKCLKNWKFSAYLGSGTHGVIFSVVNKSGTTRAAKIVTMDPKSEVKVQKKLAKIGIAPKVFHSCKISDDLWVVVMEKVDGSLGELVGGHRSLSAKMLSRVYEELIRNIEVMEAKNVSHGDLSLDNVGYIILPDGGVRIILIDFGWSGAYVPMFDMVSLTQALLFTRNKVNRDFLIKKMAKYIEDKYHYKLPGSALAVDTLFRDFQSRYI 792
            W++  +  TCNISP+ VVNTLKK+GA    I +V++RSD C+ I++AL + CLKNWKF A+LGSG HG  FS+VNKSG  RAAKIV++DP  EV+ Q+K+A IG+APKV+ +CK++  +WV+ M++V+GS+ +LVGGH+SL  K L  +++E+++ +E ME  NVSHGDLSLDN+GYI+ PDG   ++LIDFGWSG ++PMFDM SL QALLFT+N+ NR++L  K   YI  KY++ LP SA   D LFRD+Q +++
Sbjct:   20 WYETGDGETCNISPLQVVNTLKKMGAPSHIIASVKTRSDMCRNITKALDLNCLKNWKFRAFLGSGAHGSTFSIVNKSGMVRAAKIVSVDPFREVRAQRKMASIGVAPKVYDTCKLAKGVWVLTMDRVNGSVQDLVGGHKSLGKKKLRNLFQEIVKTVEAMEKANVSHGDLSLDNMGYIVRPDGSYGVMLIDFGWSGEHIPMFDMTSLAQALLFTKNEHNREYLYDKTHAYIRAKYNFTLPESAHGFDMLFRDYQQKFV 277
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BLAST of mRNA_P-fluviatile_contig12.1331.1 vs. uniprot
Match: Q8QNC6_ESV1K (EsV-1-156 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC6_ESV1K)

HSP 1 Score: 76.6 bits (187), Expect = 1.590e-12
Identity = 53/228 (23.25%), Postives = 105/228 (46.05%), Query Frame = 1 
Query:   46 CNISPIHVVNTLKKLGATKS----RIKAVRSRSDTCQFISEALSMKCLKNWKFSAYLGSGTHGVIFSVVNKSGTTRAAKIVTMDPK---SEVKVQKKLAKIGIAPKVFHSCKI--------------------------SDD-------LWVVVMEKVDGSLGELVGGHRSLSAKMLSRVYEELIRNIEVMEAKNVSHGDLSLDNVGYIILPDGG--VRIILIDFGWS 603
            C++S I     + K+   +      +   ++ +  C+ +++ L+  C++ W+ + +L +G +G +F  V+ +GT+ A K+ T D K    E+  Q+   K G+APK+   C                            ++D       + V++ME++ G LG+ +   R  S + L +   E+ + +       ++HGDL L+N+GY+        +R++ IDFG S
Sbjct:   18 CDLSQIEARRLILKVALGRDIGPGDVATAKNPNRLCETLTKMLACSCMRGWRVTKFLSAGAYGHVFRAVHTNGTSAALKVQTGDAKRLRGELSAQRAFHKRGLAPKIIRYCSFKPKTRLGMVAHERLNRAVQDKSVPFQTEDESPAGNLVHVIIMEEIAGVLGQWL--RREKSNQQLHKTAFEITKLMVAFRNHGLTHGDLHLNNIGYVYTDASKRYMRLMPIDFGRS 243
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BLAST of mRNA_P-fluviatile_contig12.1331.1 vs. uniprot
Match: A0A5C3KGX4_9AGAR (Crinkler domain-containing protein n=1 Tax=Coprinopsis marcescibilis TaxID=230819 RepID=A0A5C3KGX4_9AGAR)

HSP 1 Score: 57.8 bits (138), Expect = 8.000e-6
Identity = 38/113 (33.63%), Postives = 61/113 (53.98%), Query Frame = 1 
Query:  271 IVTMDPKSEVKVQKKLAKIGIAPKVFHSCKISDDLWVVVMEKVDG-SLGELVGGHRSLSAKMLSRVYEELIRNIEVMEAKNVSHGDLSLDNVGYIILPDGGVRIILIDFGWSG 606
            +V   P+        L+ +G+APK+    +I  DL++VVM++V+G SL  L+    ++ A +L +V E     I  +   N+  GDL   N+ Y +  DGGV   L+DF W+G
Sbjct:  540 VVKFTPRYNQAAHTILSNLGLAPKLHFCGRIVGDLYMVVMDRVNGKSLWHLLQEGTAIPAFVLEKVEEA----ISYLHDANMVFGDLRDANILYCLASDGGV--FLVDFDWAG 646
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QNH4_ESV1K1.720e-10455.43EsV-1-104 n=2 Tax=root TaxID=1 RepID=Q8QNH4_ESV1K[more]
Q8QNC6_ESV1K1.590e-1223.25EsV-1-156 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A5C3KGX4_9AGAR8.000e-633.63Crinkler domain-containing protein n=1 Tax=Coprino... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:158689..159504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-104 protein kinase
Ec32 orthologEc-06_005770.1
Exons1
Model size816
Cds size816
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.7785475-CDS-P-fluviatile_contig12:158688..1595041622815491.7785475-CDS-P-fluviatile_contig12:158688..159504Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 158689..159504 +
1693562052.6529808-CDS-P-fluviatile_contig12:158688..1595041693562052.6529808-CDS-P-fluviatile_contig12:158688..159504Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 158689..159504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1331.1prot_P-fluviatile_contig12.1331.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 158689..159504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1331.1

>prot_P-fluviatile_contig12.1331.1 ID=prot_P-fluviatile_contig12.1331.1|Name=mRNA_P-fluviatile_contig12.1331.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=272bp
MANVLDQWFDDEANTCNISPIHVVNTLKKLGATKSRIKAVRSRSDTCQFI
SEALSMKCLKNWKFSAYLGSGTHGVIFSVVNKSGTTRAAKIVTMDPKSEV
KVQKKLAKIGIAPKVFHSCKISDDLWVVVMEKVDGSLGELVGGHRSLSAK
MLSRVYEELIRNIEVMEAKNVSHGDLSLDNVGYIILPDGGVRIILIDFGW
SGAYVPMFDMVSLTQALLFTRNKVNRDFLIKKMAKYIEDKYHYKLPGSAL
AVDTLFRDFQSRYIQEMRRSI*
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mRNA from alignment at P-fluviatile_contig12:158689..159504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1331.1 ID=mRNA_P-fluviatile_contig12.1331.1|Name=mRNA_P-fluviatile_contig12.1331.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=816bp|location=Sequence derived from alignment at P-fluviatile_contig12:158689..159504+ (Porterinema fluviatile SAG_2381)
ATGGCAAACGTATTGGACCAATGGTTCGACGACGAGGCCAATACGTGCAA
CATTTCCCCGATCCACGTCGTAAACACCCTGAAGAAACTCGGTGCCACCA
AGTCCCGAATCAAGGCGGTACGATCACGATCCGACACGTGCCAGTTCATC
TCGGAAGCTCTGTCTATGAAATGTCTGAAGAACTGGAAATTTTCGGCATA
CCTTGGATCAGGTACCCACGGCGTTATATTTAGCGTTGTGAATAAAAGTG
GTACGACGAGGGCGGCGAAGATCGTCACTATGGACCCCAAGTCAGAGGTC
AAGGTCCAGAAGAAACTCGCCAAGATCGGTATCGCCCCGAAAGTTTTTCA
TTCTTGCAAGATATCCGACGACCTGTGGGTTGTCGTCATGGAGAAGGTCG
ACGGGTCCCTTGGGGAACTCGTGGGTGGCCACAGGAGCTTGAGTGCGAAA
ATGCTTTCCAGGGTGTACGAGGAGCTCATTCGTAACATAGAGGTAATGGA
AGCAAAGAATGTATCCCACGGGGACCTTTCCCTCGACAACGTAGGGTACA
TCATCCTTCCCGATGGAGGGGTCCGTATTATACTGATAGACTTTGGGTGG
AGCGGTGCCTACGTTCCCATGTTCGACATGGTTAGTCTCACACAGGCCCT
GTTGTTCACCCGCAATAAGGTGAACAGGGACTTTCTCATAAAAAAGATGG
CCAAATATATCGAGGACAAGTACCACTACAAGCTTCCCGGATCCGCGCTT
GCGGTGGATACCCTGTTTAGAGACTTTCAGAGTAGGTACATACAGGAGAT
GAGGAGAAGCATTTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:158689..159504+

>mRNA_P-fluviatile_contig12.1331.1 ID=mRNA_P-fluviatile_contig12.1331.1|Name=mRNA_P-fluviatile_contig12.1331.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1632bp|location=Sequence derived from alignment at P-fluviatile_contig12:158689..159504+ (Porterinema fluviatile SAG_2381)
ATGGCAAACGTATTGGACCAATGGTTCGACGACGAGGCCAATACGTGCAA
CATTTCCCCGATCCACGTCGTAAACACCCTGAAGAAACTCGGTGCCACCA
AGTCCCGAATCAAGGCGGTACGATCACGATCCGACACGTGCCAGTTCATC
TCGGAAGCTCTGTCTATGAAATGTCTGAAGAACTGGAAATTTTCGGCATA
CCTTGGATCAGGTACCCACGGCGTTATATTTAGCGTTGTGAATAAAAGTG
GTACGACGAGGGCGGCGAAGATCGTCACTATGGACCCCAAGTCAGAGGTC
AAGGTCCAGAAGAAACTCGCCAAGATCGGTATCGCCCCGAAAGTTTTTCA
TTCTTGCAAGATATCCGACGACCTGTGGGTTGTCGTCATGGAGAAGGTCG
ACGGGTCCCTTGGGGAACTCGTGGGTGGCCACAGGAGCTTGAGTGCGAAA
ATGCTTTCCAGGGTGTACGAGGAGCTCATTCGTAACATAGAGGTAATGGA
AGCAAAGAATGTATCCCACGGGGACCTTTCCCTCGACAACGTAGGGTACA
TCATCCTTCCCGATGGAGGGGTCCGTATTATACTGATAGACTTTGGGTGG
AGCGGTGCCTACGTTCCCATGTTCGACATGGTTAGTCTCACACAGGCCCT
GTTGTTCACCCGCAATAAGGTGAACAGGGACTTTCTCATAAAAAAGATGG
CCAAATATATCGAGGACAAGTACCACTACAAGCTTCCCGGATCCGCGCTT
GCGGTGGATACCCTGTTTAGAGACTTTCAGAGTAGGTACATACAGGAGAT
GAGGAGAAGCATTTAGATGGCAAACGTATTGGACCAATGGTTCGACGACG
AGGCCAATACGTGCAACATTTCCCCGATCCACGTCGTAAACACCCTGAAG
AAACTCGGTGCCACCAAGTCCCGAATCAAGGCGGTACGATCACGATCCGA
CACGTGCCAGTTCATCTCGGAAGCTCTGTCTATGAAATGTCTGAAGAACT
GGAAATTTTCGGCATACCTTGGATCAGGTACCCACGGCGTTATATTTAGC
GTTGTGAATAAAAGTGGTACGACGAGGGCGGCGAAGATCGTCACTATGGA
CCCCAAGTCAGAGGTCAAGGTCCAGAAGAAACTCGCCAAGATCGGTATCG
CCCCGAAAGTTTTTCATTCTTGCAAGATATCCGACGACCTGTGGGTTGTC
GTCATGGAGAAGGTCGACGGGTCCCTTGGGGAACTCGTGGGTGGCCACAG
GAGCTTGAGTGCGAAAATGCTTTCCAGGGTGTACGAGGAGCTCATTCGTA
ACATAGAGGTAATGGAAGCAAAGAATGTATCCCACGGGGACCTTTCCCTC
GACAACGTAGGGTACATCATCCTTCCCGATGGAGGGGTCCGTATTATACT
GATAGACTTTGGGTGGAGCGGTGCCTACGTTCCCATGTTCGACATGGTTA
GTCTCACACAGGCCCTGTTGTTCACCCGCAATAAGGTGAACAGGGACTTT
CTCATAAAAAAGATGGCCAAATATATCGAGGACAAGTACCACTACAAGCT
TCCCGGATCCGCGCTTGCGGTGGATACCCTGTTTAGAGACTTTCAGAGTA
GGTACATACAGGAGATGAGGAGAAGCATTTAG
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