mRNA_P-fluviatile_contig12.1330.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1330.1
Unique NamemRNA_P-fluviatile_contig12.1330.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1330.1 vs. uniprot
Match: D8LPE2_ECTSI (EsV-1-114 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPE2_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 8.970e-70
Identity = 133/371 (35.85%), Postives = 203/371 (54.72%), Query Frame = 1 
Query:   16 ITEKGVCSEIFAFVGEGDYLFTGTVCKSWNERSRVTKKNKTSMQNAYKTPSRLSDSIAGGLDTRWPFLRATMYKSPIPILERLTSIGLNWTQNDVQHAAQEGREDILRFFQEKGTVFDKKILHSAVRYRRLSTVKFLLDSGCPIDSVPIDWGFGEEVEEVIDELKMRSLEVAIRLGDMDIVRLLCANKFRFNRESFEEAVGTKDVRIVDCIVDLGCSPPNGIFEDAVRRKDHFTVGYLLERGLLREEWGVHGTTKTSDPILLQMLLGHGIIPLDEDVDNCIRDHDMATALVFTNEYDCKPTKEAFMCFFDREDLPNSGDECVHI--LDWLYYTQECSLDRDIARSVFESK-------SVSDAVRAWFRERL 1101
            ITE  V + I +F GE D+LFTGTVC++W + S  T    T    A ++ SRL +++  G++       +    + I ++ +L      W Q D++ AAQ GR D+L F +EKG   D+++LHSAVRY +   VK+LL  GCPID   I+WGFG  +   +DELKMRS+EVAI  G++ +V++L    + F   SF  A  T++  I++ ++   C  P G+F ++V  +  FT+ +L++  LL +EW + G        ++  LL  GIIP D+DVD+ I    + TA   T EY C+PT  A+M  FD     N   +C ++  LDWL+    CS+       ++E         + S  +  WF ER+
Sbjct:    5 ITEGHVSANILSF-GEKDFLFTGTVCRAWRQNSVETY---TGAGAAVESTSRLQEAVEYGVNPHLASFHSLDDGASIAVIRKLNESYCFWDQFDIERAAQHGRVDVLMFMREKGYPADERVLHSAVRYNQQEVVKYLLGVGCPIDKTVIEWGFGPYI---VDELKMRSMEVAISEGNLTMVKILRTVDYPFIDNSFVFACDTQNTEILEYLIQEKCHVPQGLFRESVELRSFFTLAFLIDHKLLVDEWDLWGCIMDDGDDMMVFLLEKGIIPTDDDVDSAIAAGKLGTAKFLTKEYSCRPTPLAYMIVFD-----NIMCDCHYVMYLDWLHDDMHCSIGFSSPEDMYEDPQGAFVLDNCSSTIEDWFVERI 363
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BLAST of mRNA_P-fluviatile_contig12.1330.1 vs. uniprot
Match: Q8QNG5_ESV1K (EsV-1-114 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNG5_ESV1K)

HSP 1 Score: 206 bits (523), Expect = 1.230e-59
Identity = 123/375 (32.80%), Postives = 196/375 (52.27%), Query Frame = 1 
Query:    7 SRAITEKGVCSEIFAFVGEGDYLFTGTVCKSWNERSRVTKKNKTSMQNAYKTPSRLSDSIAGGLDTRWPFLRATMYKSPIPILERLTSIGLNWTQNDVQHAAQEGREDILRFFQEKGTVFDKKILHSAVRYRRLSTVKFLLDSGCPIDSVPIDWGFGEEVEEVIDELKMRSLEVAIRLGDMDIVRLLCANKFRFNRESFEEAVGTKDVRIVDCIVDLGCSPPNGIFEDAVRRKDHFTVGYLLERGLLREEWGVHGTTKTSDPILLQMLLGHGIIPLDEDVDNCIRDHDMATALVFTNEYDCKPTKEAFMCFFDREDLPNSGDECVHI--LDWLYYTQECSLDRDIARSVFES-------KSVSDAVRAWFRERLE 1104
            S  +TE  V + I +F GE D+LFTGTVC++W + SR T    T    A ++ SRL ++   G++       +    + I ++ +L      W Q D++ AA+ GR D+L+F +EKG   DK++LHSAV                      I+WGFG  +   IDELKMRS+EVAI  G++ +V++L    + F  +SF  A  T+++ +++ ++   C  P G+F +++  ++ FT+ +L++  LL +EW + G            LLG GIIP D+DVD+ I   ++  A   T  Y C+PT  A+M  FD     N   +C ++  LDWLY   +CS+       ++E        ++ S  +  WF ER+E
Sbjct:    2 SSVLTEGHVSANILSF-GEKDFLFTGTVCRAWRQNSRSTY---TGAGEAVESISRLQEAGDHGINFHLASFHSLEDGASIAVIRKLNESYCFWEQFDIERAAEHGRVDVLKFMREKGYPADKRVLHSAVXXXXXXXXXXXXXXXXXXXXXVIEWGFGPYI---IDELKMRSMEVAISEGNLSMVKILRTVDYPFIDDSFVFACETQNIELLEYLIQEKCHVPQGLFGESIELRNFFTLEFLIDHELLVDEWDLWGCIMDDXXXXXMFLLGKGIIPKDDDVDSAIAAGNLGIAKFLTKGYSCRPTALAYMVVFD-----NVMCDCHYVMFLDWLYDDMQCSIGFSSLEDMYEDPQGAYVLENCSSNIEDWFVERIE 364
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPE2_ECTSI8.970e-7035.85EsV-1-114 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QNG5_ESV1K1.230e-5932.80EsV-1-114 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:148440..149549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionEsV-1-114 ankyrin-repeat protein
Ec32 orthologEc-06_005690.1
Hectar predicted targeting categoryother localisation
Exons1
Model size1110
Cds size1110
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.7327247-CDS-P-fluviatile_contig12:148439..1495491622815491.7327247-CDS-P-fluviatile_contig12:148439..149549Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 148440..149549 -
1693562052.2796202-CDS-P-fluviatile_contig12:148439..1495491693562052.2796202-CDS-P-fluviatile_contig12:148439..149549Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 148440..149549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1330.1prot_P-fluviatile_contig12.1330.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 148440..149549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1330.1

>prot_P-fluviatile_contig12.1330.1 ID=prot_P-fluviatile_contig12.1330.1|Name=mRNA_P-fluviatile_contig12.1330.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=370bp
MSSRAITEKGVCSEIFAFVGEGDYLFTGTVCKSWNERSRVTKKNKTSMQN
AYKTPSRLSDSIAGGLDTRWPFLRATMYKSPIPILERLTSIGLNWTQNDV
QHAAQEGREDILRFFQEKGTVFDKKILHSAVRYRRLSTVKFLLDSGCPID
SVPIDWGFGEEVEEVIDELKMRSLEVAIRLGDMDIVRLLCANKFRFNRES
FEEAVGTKDVRIVDCIVDLGCSPPNGIFEDAVRRKDHFTVGYLLERGLLR
EEWGVHGTTKTSDPILLQMLLGHGIIPLDEDVDNCIRDHDMATALVFTNE
YDCKPTKEAFMCFFDREDLPNSGDECVHILDWLYYTQECSLDRDIARSVF
ESKSVSDAVRAWFRERLEH*
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mRNA from alignment at P-fluviatile_contig12:148440..149549-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1330.1 ID=mRNA_P-fluviatile_contig12.1330.1|Name=mRNA_P-fluviatile_contig12.1330.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1110bp|location=Sequence derived from alignment at P-fluviatile_contig12:148440..149549- (Porterinema fluviatile SAG_2381)
ATGTCTTCTCGAGCTATAACCGAGAAGGGGGTCTGTAGTGAAATATTTGC
CTTTGTCGGAGAAGGTGACTACCTTTTCACCGGTACCGTGTGCAAGTCCT
GGAACGAAAGGTCAAGGGTGACAAAAAAAAACAAGACAAGTATGCAAAAT
GCTTACAAGACACCCTCTCGTCTATCTGATTCGATCGCCGGTGGACTCGA
CACCAGGTGGCCTTTCCTTCGCGCCACAATGTATAAATCTCCCATCCCCA
TCCTCGAAAGGCTCACATCGATAGGGTTAAACTGGACCCAAAACGACGTG
CAACACGCTGCCCAGGAGGGAAGGGAAGACATCCTTCGCTTCTTCCAGGA
AAAGGGTACCGTCTTCGACAAGAAGATCCTCCACTCCGCAGTGAGATACA
GGAGACTCTCCACCGTAAAGTTTCTCCTGGACAGCGGGTGCCCCATAGAC
TCGGTACCCATCGACTGGGGTTTCGGAGAGGAAGTCGAGGAAGTCATCGA
TGAGCTCAAGATGAGGTCGCTCGAGGTTGCCATACGCTTGGGAGACATGG
ATATCGTGAGGCTTCTGTGCGCCAACAAATTCCGATTCAACCGAGAGAGT
TTCGAAGAGGCCGTGGGAACCAAGGATGTCCGCATTGTGGACTGTATTGT
AGACCTCGGGTGCAGTCCACCCAACGGGATATTCGAGGATGCAGTCCGAA
GGAAAGATCACTTCACAGTGGGGTACCTTTTGGAGAGAGGGCTTCTTCGA
GAGGAGTGGGGGGTACATGGGACGACGAAAACCAGCGACCCCATCCTTCT
TCAAATGCTGCTGGGACACGGAATAATCCCCCTGGACGAAGACGTAGACA
ACTGCATCCGAGATCACGACATGGCAACGGCCCTTGTCTTTACGAACGAA
TACGACTGCAAACCCACGAAGGAAGCGTTTATGTGTTTCTTCGACAGGGA
AGATCTTCCTAATTCGGGGGATGAGTGTGTACACATACTAGACTGGCTGT
ATTATACCCAGGAGTGTTCTCTAGACAGGGACATTGCTCGATCTGTCTTT
GAATCGAAGAGTGTTTCTGATGCGGTAAGGGCATGGTTTAGAGAACGATT
AGAACATTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:148440..149549-

>mRNA_P-fluviatile_contig12.1330.1 ID=mRNA_P-fluviatile_contig12.1330.1|Name=mRNA_P-fluviatile_contig12.1330.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2220bp|location=Sequence derived from alignment at P-fluviatile_contig12:148440..149549- (Porterinema fluviatile SAG_2381)
ATGTCTTCTCGAGCTATAACCGAGAAGGGGGTCTGTAGTGAAATATTTGC
CTTTGTCGGAGAAGGTGACTACCTTTTCACCGGTACCGTGTGCAAGTCCT
GGAACGAAAGGTCAAGGGTGACAAAAAAAAACAAGACAAGTATGCAAAAT
GCTTACAAGACACCCTCTCGTCTATCTGATTCGATCGCCGGTGGACTCGA
CACCAGGTGGCCTTTCCTTCGCGCCACAATGTATAAATCTCCCATCCCCA
TCCTCGAAAGGCTCACATCGATAGGGTTAAACTGGACCCAAAACGACGTG
CAACACGCTGCCCAGGAGGGAAGGGAAGACATCCTTCGCTTCTTCCAGGA
AAAGGGTACCGTCTTCGACAAGAAGATCCTCCACTCCGCAGTGAGATACA
GGAGACTCTCCACCGTAAAGTTTCTCCTGGACAGCGGGTGCCCCATAGAC
TCGGTACCCATCGACTGGGGTTTCGGAGAGGAAGTCGAGGAAGTCATCGA
TGAGCTCAAGATGAGGTCGCTCGAGGTTGCCATACGCTTGGGAGACATGG
ATATCGTGAGGCTTCTGTGCGCCAACAAATTCCGATTCAACCGAGAGAGT
TTCGAAGAGGCCGTGGGAACCAAGGATGTCCGCATTGTGGACTGTATTGT
AGACCTCGGGTGCAGTCCACCCAACGGGATATTCGAGGATGCAGTCCGAA
GGAAAGATCACTTCACAGTGGGGTACCTTTTGGAGAGAGGGCTTCTTCGA
GAGGAGTGGGGGGTACATGGGACGACGAAAACCAGCGACCCCATCCTTCT
TCAAATGCTGCTGGGACACGGAATAATCCCCCTGGACGAAGACGTAGACA
ACTGCATCCGAGATCACGACATGGCAACGGCCCTTGTCTTTACGAACGAA
TACGACTGCAAACCCACGAAGGAAGCGTTTATGTGTTTCTTCGACAGGGA
AGATCTTCCTAATTCGGGGGATGAGTGTGTACACATACTAGACTGGCTGT
ATTATACCCAGGAGTGTTCTCTAGACAGGGACATTGCTCGATCTGTCTTT
GAATCGAAGAGTGTTTCTGATGCGGTAAGGGCATGGTTTAGAGAACGATT
AGAACATTAGATGTCTTCTCGAGCTATAACCGAGAAGGGGGTCTGTAGTG
AAATATTTGCCTTTGTCGGAGAAGGTGACTACCTTTTCACCGGTACCGTG
TGCAAGTCCTGGAACGAAAGGTCAAGGGTGACAAAAAAAAACAAGACAAG
TATGCAAAATGCTTACAAGACACCCTCTCGTCTATCTGATTCGATCGCCG
GTGGACTCGACACCAGGTGGCCTTTCCTTCGCGCCACAATGTATAAATCT
CCCATCCCCATCCTCGAAAGGCTCACATCGATAGGGTTAAACTGGACCCA
AAACGACGTGCAACACGCTGCCCAGGAGGGAAGGGAAGACATCCTTCGCT
TCTTCCAGGAAAAGGGTACCGTCTTCGACAAGAAGATCCTCCACTCCGCA
GTGAGATACAGGAGACTCTCCACCGTAAAGTTTCTCCTGGACAGCGGGTG
CCCCATAGACTCGGTACCCATCGACTGGGGTTTCGGAGAGGAAGTCGAGG
AAGTCATCGATGAGCTCAAGATGAGGTCGCTCGAGGTTGCCATACGCTTG
GGAGACATGGATATCGTGAGGCTTCTGTGCGCCAACAAATTCCGATTCAA
CCGAGAGAGTTTCGAAGAGGCCGTGGGAACCAAGGATGTCCGCATTGTGG
ACTGTATTGTAGACCTCGGGTGCAGTCCACCCAACGGGATATTCGAGGAT
GCAGTCCGAAGGAAAGATCACTTCACAGTGGGGTACCTTTTGGAGAGAGG
GCTTCTTCGAGAGGAGTGGGGGGTACATGGGACGACGAAAACCAGCGACC
CCATCCTTCTTCAAATGCTGCTGGGACACGGAATAATCCCCCTGGACGAA
GACGTAGACAACTGCATCCGAGATCACGACATGGCAACGGCCCTTGTCTT
TACGAACGAATACGACTGCAAACCCACGAAGGAAGCGTTTATGTGTTTCT
TCGACAGGGAAGATCTTCCTAATTCGGGGGATGAGTGTGTACACATACTA
GACTGGCTGTATTATACCCAGGAGTGTTCTCTAGACAGGGACATTGCTCG
ATCTGTCTTTGAATCGAAGAGTGTTTCTGATGCGGTAAGGGCATGGTTTA
GAGAACGATTAGAACATTAG
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