mRNA_P-fluviatile_contig12.1326.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1326.1
Unique NamemRNA_P-fluviatile_contig12.1326.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1326.1 vs. uniprot
Match: Q8QNE6_ESV1K (EsV-1-133 n=2 Tax=root TaxID=1 RepID=Q8QNE6_ESV1K)

HSP 1 Score: 264 bits (675), Expect = 9.640e-83
Identity = 142/353 (40.23%), Postives = 225/353 (63.74%), Query Frame = 1 
Query:   13 RDFVSENPEFRFLKVSEQDGVFKKSLKIVAACLTSSIGFTVRHSVSIRRYVSLRSTKDVGTIERMRVMTKEKNGLPSCLDIIKTNNGAMVSHVDTTALQEKLEDIIRGWTIQNSPPGRNTHRD--SGYYKKLLRIKILFDHVKNIYSDKYNVYQAAYVNKGYSFRASLCFVMQIVSALALVRQP----EDASVNRSRDFEDYLFIVVTVLYMFFNIPANYVTSNISHGIILLSVFYELGMYSRMVFVAMDMIINNILMSFIPIISSRLLSGTTRSTEIITRSLSVMFITSLDDQAVTKGESNRFLESQDSFLQEMLERVDQCRDSDRLYFITYIPWIENLVLLASVLCAYYIL 1053
            R F  E+ ++R +  ++ D    +  K     +  S+   + HS  +RR++SL   K + T +   ++ K+   +P  +D+I+T NG M+S++D   +  +L  +   W  +    GR    D  +G YKKL R+K +++H+  +YSDKYN+YQAAYV+  Y+ RA LCFVMQI+S  AL+++     E +     R   D + IVVT+++MFFN+PAN +TS++SH ++L  VF+++ MY R+ FV MD+++N  ++S +P++S+RLL  T  S  I+T+SLSV F+TSLDD A+TK ESN    SQ + L+++ E+VD   DSDRL+F+ Y+PW+E L+L+ASV  +Y IL
Sbjct:    9 RHFADESLDYRIMTTADSDNAVVRCGKFFLRQIFGSVRKIISHSRVLRRFLSL---KGLPTQQGTLLLFKD---MPDAIDMIETANGVMISNIDADKMGARLNAMTSRWLEKR---GRFVENDPEAGLYKKLFRLKFIYNHLDEVYSDKYNIYQAAYVDPAYTVRAVLCFVMQIISFAALMKEGGGSGETSLAGDHRSTVDVVLIVVTIMFMFFNLPANSITSSMSHNVVLFHVFFKMKMYGRLAFVVMDLVVNFFIISLMPVVSARLLYDTNDSASIVTKSLSVFFVTSLDDSAITKSESNNMSASQSALLRDVTEKVDHFVDSDRLWFVAYLPWVEMLLLIASVTVSYSIL 352
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNE6_ESV1K9.640e-8340.23EsV-1-133 n=2 Tax=root TaxID=1 RepID=Q8QNE6_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:88520..89581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-133
Ec32 orthologEc-06_005520.1
Exons1
Model size1062
Cds size1062
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.5500348-CDS-P-fluviatile_contig12:88519..895811622815491.5500348-CDS-P-fluviatile_contig12:88519..89581Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 88520..89581 -
1693562052.2038167-CDS-P-fluviatile_contig12:88519..895811693562052.2038167-CDS-P-fluviatile_contig12:88519..89581Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 88520..89581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1326.1prot_P-fluviatile_contig12.1326.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 88520..89581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1326.1

>prot_P-fluviatile_contig12.1326.1 ID=prot_P-fluviatile_contig12.1326.1|Name=mRNA_P-fluviatile_contig12.1326.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=354bp
MNYSRDFVSENPEFRFLKVSEQDGVFKKSLKIVAACLTSSIGFTVRHSVS
IRRYVSLRSTKDVGTIERMRVMTKEKNGLPSCLDIIKTNNGAMVSHVDTT
ALQEKLEDIIRGWTIQNSPPGRNTHRDSGYYKKLLRIKILFDHVKNIYSD
KYNVYQAAYVNKGYSFRASLCFVMQIVSALALVRQPEDASVNRSRDFEDY
LFIVVTVLYMFFNIPANYVTSNISHGIILLSVFYELGMYSRMVFVAMDMI
INNILMSFIPIISSRLLSGTTRSTEIITRSLSVMFITSLDDQAVTKGESN
RFLESQDSFLQEMLERVDQCRDSDRLYFITYIPWIENLVLLASVLCAYYI
LFT*
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mRNA from alignment at P-fluviatile_contig12:88520..89581-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1326.1 ID=mRNA_P-fluviatile_contig12.1326.1|Name=mRNA_P-fluviatile_contig12.1326.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1062bp|location=Sequence derived from alignment at P-fluviatile_contig12:88520..89581- (Porterinema fluviatile SAG_2381)
ATGAACTACTCTAGGGACTTTGTATCGGAGAACCCAGAGTTTCGTTTCTT
GAAAGTGTCTGAGCAAGATGGGGTATTCAAGAAGTCTCTCAAGATTGTAG
CGGCGTGTCTGACGTCTTCAATAGGATTTACCGTGAGACACTCCGTGAGC
ATAAGAAGGTACGTATCCCTTAGAAGTACCAAAGACGTGGGAACGATAGA
ACGCATGCGTGTCATGACCAAAGAAAAGAATGGTCTTCCATCTTGCCTAG
ATATCATTAAGACTAACAACGGGGCCATGGTTAGCCACGTCGACACGACT
GCGTTACAAGAAAAACTCGAGGATATCATCCGAGGTTGGACTATCCAGAA
CTCTCCCCCTGGTAGGAACACGCACAGAGACTCCGGGTACTACAAGAAGC
TCTTGAGAATCAAGATACTTTTCGACCACGTCAAAAACATATACTCTGAT
AAGTACAATGTCTACCAGGCAGCCTATGTTAACAAGGGGTATTCTTTCAG
AGCTTCTCTTTGCTTCGTCATGCAGATCGTATCCGCCTTAGCCCTAGTCA
GACAACCCGAGGACGCATCGGTGAATCGTTCGCGAGACTTTGAAGACTAT
CTATTCATCGTCGTCACGGTTTTGTACATGTTCTTCAATATACCTGCCAA
TTACGTTACTTCCAACATTAGCCACGGTATCATACTTCTTAGCGTGTTCT
ACGAGCTCGGCATGTACTCCAGAATGGTGTTTGTGGCGATGGACATGATA
ATCAACAATATATTGATGTCATTTATCCCCATCATATCGTCTAGGTTGCT
CTCTGGAACCACTCGATCGACAGAGATCATCACCAGGTCGCTCTCCGTAA
TGTTCATTACGAGTCTTGACGACCAGGCAGTCACAAAGGGGGAATCCAAT
CGATTTCTGGAGTCTCAAGACTCTTTCCTCCAGGAGATGCTCGAGAGAGT
AGATCAGTGTAGAGACAGCGACAGGTTGTATTTTATTACGTACATCCCTT
GGATTGAAAATCTGGTGCTACTCGCTTCCGTACTTTGCGCCTACTATATC
TTGTTCACTTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:88520..89581-

>mRNA_P-fluviatile_contig12.1326.1 ID=mRNA_P-fluviatile_contig12.1326.1|Name=mRNA_P-fluviatile_contig12.1326.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2124bp|location=Sequence derived from alignment at P-fluviatile_contig12:88520..89581- (Porterinema fluviatile SAG_2381)
ATGAACTACTCTAGGGACTTTGTATCGGAGAACCCAGAGTTTCGTTTCTT
GAAAGTGTCTGAGCAAGATGGGGTATTCAAGAAGTCTCTCAAGATTGTAG
CGGCGTGTCTGACGTCTTCAATAGGATTTACCGTGAGACACTCCGTGAGC
ATAAGAAGGTACGTATCCCTTAGAAGTACCAAAGACGTGGGAACGATAGA
ACGCATGCGTGTCATGACCAAAGAAAAGAATGGTCTTCCATCTTGCCTAG
ATATCATTAAGACTAACAACGGGGCCATGGTTAGCCACGTCGACACGACT
GCGTTACAAGAAAAACTCGAGGATATCATCCGAGGTTGGACTATCCAGAA
CTCTCCCCCTGGTAGGAACACGCACAGAGACTCCGGGTACTACAAGAAGC
TCTTGAGAATCAAGATACTTTTCGACCACGTCAAAAACATATACTCTGAT
AAGTACAATGTCTACCAGGCAGCCTATGTTAACAAGGGGTATTCTTTCAG
AGCTTCTCTTTGCTTCGTCATGCAGATCGTATCCGCCTTAGCCCTAGTCA
GACAACCCGAGGACGCATCGGTGAATCGTTCGCGAGACTTTGAAGACTAT
CTATTCATCGTCGTCACGGTTTTGTACATGTTCTTCAATATACCTGCCAA
TTACGTTACTTCCAACATTAGCCACGGTATCATACTTCTTAGCGTGTTCT
ACGAGCTCGGCATGTACTCCAGAATGGTGTTTGTGGCGATGGACATGATA
ATCAACAATATATTGATGTCATTTATCCCCATCATATCGTCTAGGTTGCT
CTCTGGAACCACTCGATCGACAGAGATCATCACCAGGTCGCTCTCCGTAA
TGTTCATTACGAGTCTTGACGACCAGGCAGTCACAAAGGGGGAATCCAAT
CGATTTCTGGAGTCTCAAGACTCTTTCCTCCAGGAGATGCTCGAGAGAGT
AGATCAGTGTAGAGACAGCGACAGGTTGTATTTTATTACGTACATCCCTT
GGATTGAAAATCTGGTGCTACTCGCTTCCGTACTTTGCGCCTACTATATC
TTGTTCACTTAGATGAACTACTCTAGGGACTTTGTATCGGAGAACCCAGA
GTTTCGTTTCTTGAAAGTGTCTGAGCAAGATGGGGTATTCAAGAAGTCTC
TCAAGATTGTAGCGGCGTGTCTGACGTCTTCAATAGGATTTACCGTGAGA
CACTCCGTGAGCATAAGAAGGTACGTATCCCTTAGAAGTACCAAAGACGT
GGGAACGATAGAACGCATGCGTGTCATGACCAAAGAAAAGAATGGTCTTC
CATCTTGCCTAGATATCATTAAGACTAACAACGGGGCCATGGTTAGCCAC
GTCGACACGACTGCGTTACAAGAAAAACTCGAGGATATCATCCGAGGTTG
GACTATCCAGAACTCTCCCCCTGGTAGGAACACGCACAGAGACTCCGGGT
ACTACAAGAAGCTCTTGAGAATCAAGATACTTTTCGACCACGTCAAAAAC
ATATACTCTGATAAGTACAATGTCTACCAGGCAGCCTATGTTAACAAGGG
GTATTCTTTCAGAGCTTCTCTTTGCTTCGTCATGCAGATCGTATCCGCCT
TAGCCCTAGTCAGACAACCCGAGGACGCATCGGTGAATCGTTCGCGAGAC
TTTGAAGACTATCTATTCATCGTCGTCACGGTTTTGTACATGTTCTTCAA
TATACCTGCCAATTACGTTACTTCCAACATTAGCCACGGTATCATACTTC
TTAGCGTGTTCTACGAGCTCGGCATGTACTCCAGAATGGTGTTTGTGGCG
ATGGACATGATAATCAACAATATATTGATGTCATTTATCCCCATCATATC
GTCTAGGTTGCTCTCTGGAACCACTCGATCGACAGAGATCATCACCAGGT
CGCTCTCCGTAATGTTCATTACGAGTCTTGACGACCAGGCAGTCACAAAG
GGGGAATCCAATCGATTTCTGGAGTCTCAAGACTCTTTCCTCCAGGAGAT
GCTCGAGAGAGTAGATCAGTGTAGAGACAGCGACAGGTTGTATTTTATTA
CGTACATCCCTTGGATTGAAAATCTGGTGCTACTCGCTTCCGTACTTTGC
GCCTACTATATCTTGTTCACTTAG
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