mRNA_P-fluviatile_contig12.1324.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1324.1
Unique NamemRNA_P-fluviatile_contig12.1324.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1324.1 vs. uniprot
Match: Q8QNA0_ESV1K (EsV-1-188 n=2 Tax=root TaxID=1 RepID=Q8QNA0_ESV1K)

HSP 1 Score: 530 bits (1364), Expect = 1.730e-184
Identity = 254/436 (58.26%), Postives = 328/436 (75.23%), Query Frame = 1 
Query:    7 ACVTFEERQEANRAQPCDKPWTPVFPRWMVNSITPGILLTGMTIIGYGLGTNRKWAVSNFIKPSTQLSIMLLLMCADHGSSYFDHSRVSNEAYCLTSLLPMDVFDDAKARRIFGALAVALTGVSAYGIKSGSITLSSTGIPFAAMMGYLAWSPQTFQSCSNNSLVTALLAKGLDVMTFVGILEVLFAESGNKDTSWHTPTIAYSAIISALYVVLMGKFSDYGNRITPGSCEIDDSRDLEEEKTTDRRPELYTGVLFSVVSIFYFVYLKLKFSEVSCCAVYPVLIYLLFDILTKLQVWKRGESLTGDSLHRSIVYILVQILDIMLSSSSMISVMAEKGLVGKALASGESLGLVKNAVHFAGGSLTYMWSIVRLVIAIITGSGGPTSTGSLKRLAEVVKSIGLNVVANLVPLSIDSTNATYMLSANPQEDMNVKCFVD 1314
            AC T  ERQ AN A+PC K + PVFP  +   + PG+L  G +++GYGL T RKWAVS  + PSTQ+SIMLLLM ADHGSS++DHSRVS+E YCLTS++     DD   R +FG L   LT  +A+G++SGSITL++T +PFA +  YL WSPQ FQSC NN L T  LA GLD+MTFVGI+EVL   SGNKDTSWH PT+ Y  +ISAL+V L G  S+YG R+ PGSCEI+D  D   +K  D+RPELYTGVL SV S+ ++VYLK+ FSE+SCCA YP L++L FD+L KLQVWKRGE+L GD+LHRS +Y+ VQ LD+ LSSSS++S+M++KGL+   +A  +S GL+ +A H AGGS+TY+W+++RLV+A+I+G G   + GS+ RLAE+VK + LNV ANLVPL ID  N++Y+LSA+PQ D+NV C VD
Sbjct:    4 ACETLAERQAANAAKPCKKAFRPVFPEAIAGYVAPGLLFLGCSVVGYGLSTRRKWAVSGLVSPSTQMSIMLLLMVADHGSSFWDHSRVSSEEYCLTSMITSKTLDDTIGRLVFGGLGTLLTAAAAHGMRSGSITLAATSVPFAMISYYLCWSPQKFQSCRNNGLFTGGLAFGLDIMTFVGIMEVLLQSSGNKDTSWHVPTVMYCVVISALFVALFGWNSEYGKRVKPGSCEINDEADEAADKQRDKRPELYTGVLMSVTSVMFYVYLKMSFSEISCCATYPALLFLGFDVLIKLQVWKRGEALVGDALHRSFIYLTVQALDVALSSSSLVSLMSDKGLLVGGVA--KSRGLLTHAAHLAGGSMTYVWNVLRLVVALISGGGNGMAKGSINRLAEIVKLVSLNVAANLVPLFIDQKNSSYVLSASPQNDLNVPCHVD 437
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNA0_ESV1K1.730e-18458.26EsV-1-188 n=2 Tax=root TaxID=1 RepID=Q8QNA0_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:65729..67045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1317
Cds size1317
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.4445105-CDS-P-fluviatile_contig12:65728..670451622815491.4445105-CDS-P-fluviatile_contig12:65728..67045Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 65729..67045 +
1693562052.1811295-CDS-P-fluviatile_contig12:65728..670451693562052.1811295-CDS-P-fluviatile_contig12:65728..67045Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 65729..67045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1324.1prot_P-fluviatile_contig12.1324.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 65729..67045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1324.1

>prot_P-fluviatile_contig12.1324.1 ID=prot_P-fluviatile_contig12.1324.1|Name=mRNA_P-fluviatile_contig12.1324.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=439bp
MSACVTFEERQEANRAQPCDKPWTPVFPRWMVNSITPGILLTGMTIIGYG
LGTNRKWAVSNFIKPSTQLSIMLLLMCADHGSSYFDHSRVSNEAYCLTSL
LPMDVFDDAKARRIFGALAVALTGVSAYGIKSGSITLSSTGIPFAAMMGY
LAWSPQTFQSCSNNSLVTALLAKGLDVMTFVGILEVLFAESGNKDTSWHT
PTIAYSAIISALYVVLMGKFSDYGNRITPGSCEIDDSRDLEEEKTTDRRP
ELYTGVLFSVVSIFYFVYLKLKFSEVSCCAVYPVLIYLLFDILTKLQVWK
RGESLTGDSLHRSIVYILVQILDIMLSSSSMISVMAEKGLVGKALASGES
LGLVKNAVHFAGGSLTYMWSIVRLVIAIITGSGGPTSTGSLKRLAEVVKS
IGLNVVANLVPLSIDSTNATYMLSANPQEDMNVKCFVD*
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mRNA from alignment at P-fluviatile_contig12:65729..67045+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1324.1 ID=mRNA_P-fluviatile_contig12.1324.1|Name=mRNA_P-fluviatile_contig12.1324.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1317bp|location=Sequence derived from alignment at P-fluviatile_contig12:65729..67045+ (Porterinema fluviatile SAG_2381)
ATGTCAGCGTGCGTAACGTTCGAGGAACGACAGGAAGCAAACCGAGCACA
ACCCTGCGATAAACCATGGACACCCGTGTTCCCCAGGTGGATGGTGAACT
CCATCACCCCCGGAATCCTCCTCACGGGGATGACCATCATCGGGTACGGC
CTCGGCACAAACAGGAAATGGGCCGTCTCCAACTTCATCAAGCCGTCCAC
CCAGCTATCGATCATGCTCCTACTTATGTGTGCAGACCACGGATCCAGCT
ACTTTGACCATTCTCGTGTTTCCAACGAGGCGTATTGTCTCACGAGCCTT
CTACCGATGGACGTGTTTGACGACGCCAAGGCGAGGAGGATATTCGGGGC
CCTCGCCGTCGCGCTCACAGGCGTGTCCGCGTACGGGATCAAGTCCGGGT
CCATCACTCTGTCCTCCACCGGGATACCCTTTGCGGCGATGATGGGATAC
CTCGCGTGGTCTCCCCAGACGTTCCAGTCCTGCTCGAACAATTCCCTCGT
CACCGCCTTGCTTGCAAAAGGTCTCGACGTAATGACCTTCGTGGGCATCC
TCGAGGTCCTCTTTGCCGAGTCTGGGAACAAGGATACCTCTTGGCACACC
CCCACGATCGCGTACTCAGCGATCATCAGCGCGTTGTACGTTGTCCTGAT
GGGCAAGTTCAGCGACTACGGAAATCGAATCACACCCGGGTCGTGCGAGA
TCGACGATTCCAGGGACTTGGAGGAAGAGAAGACCACGGACCGCAGGCCC
GAGCTGTACACGGGGGTCCTGTTCAGCGTCGTCTCGATCTTCTACTTTGT
CTACCTGAAGCTCAAGTTTTCAGAGGTTTCCTGCTGCGCGGTGTACCCCG
TGCTAATCTACTTGCTCTTTGACATCCTGACGAAGCTGCAGGTGTGGAAG
CGCGGGGAGAGTCTGACGGGAGATTCTCTACACCGAAGCATCGTGTACAT
TCTCGTCCAGATTCTCGACATCATGCTTTCTTCCAGCAGCATGATATCCG
TGATGGCCGAAAAAGGGCTCGTCGGCAAGGCGTTGGCCTCGGGGGAATCT
CTTGGACTGGTAAAGAACGCGGTACACTTCGCCGGGGGCTCTCTGACTTA
CATGTGGAGCATCGTCAGGCTGGTCATTGCCATCATCACGGGAAGCGGTG
GTCCCACGAGCACCGGCTCTCTCAAGAGGCTTGCGGAAGTGGTCAAGTCC
ATCGGTCTCAACGTGGTGGCCAATCTGGTTCCGCTGAGCATCGACTCGAC
GAACGCGACCTACATGCTTTCAGCGAATCCCCAGGAGGACATGAACGTCA
AATGTTTCGTAGATTAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:65729..67045+

>mRNA_P-fluviatile_contig12.1324.1 ID=mRNA_P-fluviatile_contig12.1324.1|Name=mRNA_P-fluviatile_contig12.1324.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2634bp|location=Sequence derived from alignment at P-fluviatile_contig12:65729..67045+ (Porterinema fluviatile SAG_2381)
ATGTCAGCGTGCGTAACGTTCGAGGAACGACAGGAAGCAAACCGAGCACA
ACCCTGCGATAAACCATGGACACCCGTGTTCCCCAGGTGGATGGTGAACT
CCATCACCCCCGGAATCCTCCTCACGGGGATGACCATCATCGGGTACGGC
CTCGGCACAAACAGGAAATGGGCCGTCTCCAACTTCATCAAGCCGTCCAC
CCAGCTATCGATCATGCTCCTACTTATGTGTGCAGACCACGGATCCAGCT
ACTTTGACCATTCTCGTGTTTCCAACGAGGCGTATTGTCTCACGAGCCTT
CTACCGATGGACGTGTTTGACGACGCCAAGGCGAGGAGGATATTCGGGGC
CCTCGCCGTCGCGCTCACAGGCGTGTCCGCGTACGGGATCAAGTCCGGGT
CCATCACTCTGTCCTCCACCGGGATACCCTTTGCGGCGATGATGGGATAC
CTCGCGTGGTCTCCCCAGACGTTCCAGTCCTGCTCGAACAATTCCCTCGT
CACCGCCTTGCTTGCAAAAGGTCTCGACGTAATGACCTTCGTGGGCATCC
TCGAGGTCCTCTTTGCCGAGTCTGGGAACAAGGATACCTCTTGGCACACC
CCCACGATCGCGTACTCAGCGATCATCAGCGCGTTGTACGTTGTCCTGAT
GGGCAAGTTCAGCGACTACGGAAATCGAATCACACCCGGGTCGTGCGAGA
TCGACGATTCCAGGGACTTGGAGGAAGAGAAGACCACGGACCGCAGGCCC
GAGCTGTACACGGGGGTCCTGTTCAGCGTCGTCTCGATCTTCTACTTTGT
CTACCTGAAGCTCAAGTTTTCAGAGGTTTCCTGCTGCGCGGTGTACCCCG
TGCTAATCTACTTGCTCTTTGACATCCTGACGAAGCTGCAGGTGTGGAAG
CGCGGGGAGAGTCTGACGGGAGATTCTCTACACCGAAGCATCGTGTACAT
TCTCGTCCAGATTCTCGACATCATGCTTTCTTCCAGCAGCATGATATCCG
TGATGGCCGAAAAAGGGCTCGTCGGCAAGGCGTTGGCCTCGGGGGAATCT
CTTGGACTGGTAAAGAACGCGGTACACTTCGCCGGGGGCTCTCTGACTTA
CATGTGGAGCATCGTCAGGCTGGTCATTGCCATCATCACGGGAAGCGGTG
GTCCCACGAGCACCGGCTCTCTCAAGAGGCTTGCGGAAGTGGTCAAGTCC
ATCGGTCTCAACGTGGTGGCCAATCTGGTTCCGCTGAGCATCGACTCGAC
GAACGCGACCTACATGCTTTCAGCGAATCCCCAGGAGGACATGAACGTCA
AATGTTTCGTAGATTAAATGTCAGCGTGCGTAACGTTCGAGGAACGACAG
GAAGCAAACCGAGCACAACCCTGCGATAAACCATGGACACCCGTGTTCCC
CAGGTGGATGGTGAACTCCATCACCCCCGGAATCCTCCTCACGGGGATGA
CCATCATCGGGTACGGCCTCGGCACAAACAGGAAATGGGCCGTCTCCAAC
TTCATCAAGCCGTCCACCCAGCTATCGATCATGCTCCTACTTATGTGTGC
AGACCACGGATCCAGCTACTTTGACCATTCTCGTGTTTCCAACGAGGCGT
ATTGTCTCACGAGCCTTCTACCGATGGACGTGTTTGACGACGCCAAGGCG
AGGAGGATATTCGGGGCCCTCGCCGTCGCGCTCACAGGCGTGTCCGCGTA
CGGGATCAAGTCCGGGTCCATCACTCTGTCCTCCACCGGGATACCCTTTG
CGGCGATGATGGGATACCTCGCGTGGTCTCCCCAGACGTTCCAGTCCTGC
TCGAACAATTCCCTCGTCACCGCCTTGCTTGCAAAAGGTCTCGACGTAAT
GACCTTCGTGGGCATCCTCGAGGTCCTCTTTGCCGAGTCTGGGAACAAGG
ATACCTCTTGGCACACCCCCACGATCGCGTACTCAGCGATCATCAGCGCG
TTGTACGTTGTCCTGATGGGCAAGTTCAGCGACTACGGAAATCGAATCAC
ACCCGGGTCGTGCGAGATCGACGATTCCAGGGACTTGGAGGAAGAGAAGA
CCACGGACCGCAGGCCCGAGCTGTACACGGGGGTCCTGTTCAGCGTCGTC
TCGATCTTCTACTTTGTCTACCTGAAGCTCAAGTTTTCAGAGGTTTCCTG
CTGCGCGGTGTACCCCGTGCTAATCTACTTGCTCTTTGACATCCTGACGA
AGCTGCAGGTGTGGAAGCGCGGGGAGAGTCTGACGGGAGATTCTCTACAC
CGAAGCATCGTGTACATTCTCGTCCAGATTCTCGACATCATGCTTTCTTC
CAGCAGCATGATATCCGTGATGGCCGAAAAAGGGCTCGTCGGCAAGGCGT
TGGCCTCGGGGGAATCTCTTGGACTGGTAAAGAACGCGGTACACTTCGCC
GGGGGCTCTCTGACTTACATGTGGAGCATCGTCAGGCTGGTCATTGCCAT
CATCACGGGAAGCGGTGGTCCCACGAGCACCGGCTCTCTCAAGAGGCTTG
CGGAAGTGGTCAAGTCCATCGGTCTCAACGTGGTGGCCAATCTGGTTCCG
CTGAGCATCGACTCGACGAACGCGACCTACATGCTTTCAGCGAATCCCCA
GGAGGACATGAACGTCAAATGTTTCGTAGATTAA
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