mRNA_P-fluviatile_contig12.1323.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1323.1
Unique NamemRNA_P-fluviatile_contig12.1323.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig12.1323.1 vs. uniprot
Match: Q8QNB7_ESV1K (EsV-1-168 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB7_ESV1K)

HSP 1 Score: 226 bits (577), Expect = 1.790e-73
Identity = 105/166 (63.25%), Postives = 134/166 (80.72%), Query Frame = 1
Query:    1 MFREVIKALPSIKRHLFTRMNTIQKDGTRNILATEKMEYEECDNFMPLLDGDVVYCPSVYDGDSFRLTWV-HAGVKVRIMGRLLGVDTAEMRGSSDEEKSLALRAKKRLEEAIAGKFVTIRNPSTEKYGRSLSDIEVDDIKSVTDYMLEDTEICRPYEGGKKVSWD 495
            MF E++K +P+I +H F + NT   DGTR +LA E++ YEEC+ F+PL DGDVV+CPS YDGDSFRLTW   +G K RIMGRLLGVDT E+RGSSD+EK+LALRAK+RL + I+G+FVTIR P  EKYGR+L D++ D + SV++YM+ D +ICRPY+GGKKVSWD
Sbjct:    1 MFNELVKFIPAINKHFFPKKNTAVHDGTRCVLAEEELTYEECEPFLPLRDGDVVFCPSCYDGDSFRLTWTDRSGYKSRIMGRLLGVDTPEIRGSSDKEKALALRAKQRLSDVISGEFVTIRKPGNEKYGRALCDLQTDTLASVSEYMIADPDICRPYDGGKKVSWD 166          
BLAST of mRNA_P-fluviatile_contig12.1323.1 vs. uniprot
Match: D8LPI6_ECTSI (EsV-1-168 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI6_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 1.590e-61
Identity = 98/166 (59.04%), Postives = 121/166 (72.89%), Query Frame = 1
Query:    1 MFREVIKALPSIKRHLFTRMNTIQKDGTRNILATEKMEYEECDNFMPLLDGDVVYCPSVYDGDSFRLTWVHA-GVKVRIMGRLLGVDTAEMRGSSDEEKSLALRAKKRLEEAIAGKFVTIRNPSTEKYGRSLSDIEVDDIKSVTDYMLEDTEICRPYEGGKKVSWD 495
            MF E++K + +I +       T    GT    A E++ YEEC+ F+PL DGDVV+CPS YDGDSFRLTW+   G K RIMGRL GVDT EM GSSD+EK LALRAK+RL + IAG+FVTIR P  EKYGR+L D++   + SV+DYML D EICRPY+GG+K+SWD
Sbjct:    1 MFDELVKFISAINKS-----GTAVPLGTLRASAAEELAYEECEPFLPLRDGDVVFCPSCYDGDSFRLTWIDGLGCKSRIMGRLAGVDTPEMNGSSDKEKVLALRAKQRLSDVIAGEFVTIRTPGNEKYGRALCDLQTAKLASVSDYMLADPEICRPYDGGRKLSWD 161          
BLAST of mRNA_P-fluviatile_contig12.1323.1 vs. uniprot
Match: Q6XLT1_9PHYC (FirrV-1-P2 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT1_9PHYC)

HSP 1 Score: 127 bits (319), Expect = 1.050e-34
Identity = 62/132 (46.97%), Postives = 91/132 (68.94%), Query Frame = 1
Query:   91 ILATEKMEYEECDNFMPLLDGDVVYCPSVYDGDSFRLTWV-HAGVKVRIMGRLLGVDTAEMRGSSDEEKSLALRAKKRLEEAIAGKFVTIRNPSTEKYGRSLSDIEVDDIKSVTDYMLEDTEICRPYEGGKK 483
            IL T+  E++EC  ++PL DGDVVY   VYDGD+  + W+ H G KVR+  R+  +DT EMR  S  E+ LA++A+ +L +A+  + VTI+NPS++KYGR L+D++ D   SV  +ML  T++CRPY+  KK
Sbjct:    3 ILTTQTFEFQECLPYVPLEDGDVVYVCKVYDGDTCTVAWIDHRGKKVRMSCRIRDIDTPEMRDKSVHERELAVQARDKLRDAVLHQHVTIKNPSSDKYGRILADLQTDHAPSVAQHMLSLTDLCRPYKKKKK 134          
BLAST of mRNA_P-fluviatile_contig12.1323.1 vs. uniprot
Match: A0A6C0DG29_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DG29_9ZZZZ)

HSP 1 Score: 83.2 bits (204), Expect = 5.290e-17
Identity = 61/167 (36.53%), Postives = 90/167 (53.89%), Query Frame = 1
Query:   31 SIKRHL-FTRMNTIQKDGTRNILATEKMEYEECDNFMPLLD----GDVVYCPSVYDGDSF----RLTWVHAGVKVRIMGRLLGVDTAEMRGSSDEEKSLALRAKKRLEEAIAGKFVTIRNPSTEKYGRSLSDIEVDDIKSVTDYMLEDTEICRPYEGGKKV---SWD 495
            SIKR+L F      +K      ++   ++  + DN  P +     G V+    VYDGD+     +L +  + +  R   RL G+D+ E++  S  EK LAL +K  L   I G+ V ++N STEKYGR L+D+ VDD+ SV  +MLE+ +   PY GGKK+    WD
Sbjct:    4 SIKRYLCFCSFFNNKKKNRERRISVNNLQDADWDNTAPFVPPVTRGKVI---KVYDGDTITIASKLPYKSSEI-YRFSVRLRGIDSPEIKSKSPVEKELALNSKMCLSNVILGQIVQLKNVSTEKYGRILADVYVDDV-SVNKWMLEN-KFAVPYNGGKKIRSPEWD 164          
BLAST of mRNA_P-fluviatile_contig12.1323.1 vs. uniprot
Match: A0A6C0LAK4_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LAK4_9ZZZZ)

HSP 1 Score: 83.6 bits (205), Expect = 5.490e-17
Identity = 52/136 (38.24%), Postives = 80/136 (58.82%), Query Frame = 1
Query:  109 MEYEECDNFMP-LLDGDVVYCPSVYDGDSFRLTWVHAGVKV---RIMGRLLGVDTAEMRGSSDEEKSLALRAKKRLEEAIAGKFVTIRNPSTEKYGRSLSDIEVDDIKSVTDYMLEDTEICRPYEGGKKV---SWD 495
            +EY++   F+P ++ G V+    VYDGD+  +     G  +   R   RL G+D+AE++G++D EK  A+ A+  L   I GK + +RN  TEKYGR L+DI ++++  +  +ML D     PY+GGKKV    WD
Sbjct:   56 VEYKDTTAFIPPIVAGKVI---KVYDGDTITVASKIPGTALPIYRFRVRLAGIDSAEIKGNTDAEKKAAIVARDALHNLIFGKIIVLRNVGTEKYGRILADIYIENLH-INQWML-DNNYAVPYDGGKKVRPPEWD 186          
BLAST of mRNA_P-fluviatile_contig12.1323.1 vs. uniprot
Match: A0A6C0HBW5_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HBW5_9ZZZZ)

HSP 1 Score: 82.8 bits (203), Expect = 5.500e-17
Identity = 57/148 (38.51%), Postives = 80/148 (54.05%), Query Frame = 1
Query:   52 TRMNTIQKDGTRNILATEKMEYEECDNFMP-LLDGDVVYCPSVYDGDSFRLTWV---HAGVKVRIMGRLLGVDTAEMRGSSDEEKSLALRAKKRLEEAIAGKFVTIRNPSTEKYGRSLSDIEVDDIKSVTDYMLEDTEICRPYEGGKK 483
            T +N I K     +   +K+ YE    F+P +  G VV    VYDGD+F L       +G   R   RL G+DT E++G +  EK LA RA+  L   I  K V ++N STEKYGR L+D+ VD+   V +YM+ + +    Y+GG K
Sbjct:    9 TNVNNIIKYIYNEMEYLDKVTYENTTPFIPPITAGKVV---KVYDGDTFTLAAKLPNTSGPVYRFTVRLNGIDTPEIKGKTATEKELAKRARDALSAIIMNKIVVLKNVSTEKYGRLLADVYVDETFCVNEYMITN-KFAVKYDGGTK 152          
BLAST of mRNA_P-fluviatile_contig12.1323.1 vs. uniprot
Match: A0A6C0DC43_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DC43_9ZZZZ)

HSP 1 Score: 81.6 bits (200), Expect = 3.340e-16
Identity = 55/150 (36.67%), Postives = 84/150 (56.00%), Query Frame = 1
Query:   67 IQKDGTRNILATEKMEYEECDNFMP-LLDGDVVYCPSVYDGDSFRLTWVHAG---VKVRIMGRLLGVDTAEMRGSSDEEKSLALRAKKRLEEAIAGKFVTIRNPSTEKYGRSLSDIEVDDIKSVTDYMLEDTEICRPYEGGKK---VSWD 495
            IQK         + +EY++   F+P +L G V+    VYDGD+  +    +    +  R   RL G+D AE++G +  EK LA+ A+ RL E I GK + ++N STEKYGR L+D+ +D++  V  +ML D  +   Y+GG K   + WD
Sbjct:   46 IQKQIDAKYDYLKDVEYKDTVGFVPPILVGKVI---KVYDGDTITIASKLSNKDKIIYRFSVRLNGIDAAEIKGKTANEKRLAIEARDRLHELIYGKMIHLKNISTEKYGRILADVYLDELH-VNKWML-DNSLAVEYDGGTKHRPIEWD 190          
BLAST of mRNA_P-fluviatile_contig12.1323.1 vs. uniprot
Match: A0A6C0JH47_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JH47_9ZZZZ)

HSP 1 Score: 80.9 bits (198), Expect = 5.920e-16
Identity = 55/160 (34.38%), Postives = 89/160 (55.62%), Query Frame = 1
Query:   37 KRHLFTRMNTIQKDGTRNILATEKMEYEECDNFMPLLD-GDVVYCPSVYDGDSFRLTWVHAGVKV---RIMGRLLGVDTAEMRGSSDEEKSLALRAKKRLEEAIAGKFVTIRNPSTEKYGRSLSDIEVDDIKSVTDYMLEDTEICRPYEGGKKV---SWD 495
            + +L  R+ +  K  T+N    + +EY +   F+P ++ G VV    VYDGD+  +        +   R   RL  +D+ E++G ++EEKSLA+ A+  L   I GK + ++N  TEKYGR L+DI ++++  +  +ML D +   PY+G KKV    WD
Sbjct:   28 RTNLTNRLLSSSKYITKNDEYLKNVEYSDIKRFIPPIEEGKVV---KVYDGDTITIASKLPNSNLPFYRFSVRLRSIDSPEIKGITEEEKSLAIEARDALHNLIFGKIIVLKNLGTEKYGRVLADIYLEELH-INKWML-DNKYAVPYDGKKKVRPVEWD 182          
BLAST of mRNA_P-fluviatile_contig12.1323.1 vs. uniprot
Match: A0A6C0JK33_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JK33_9ZZZZ)

HSP 1 Score: 79.7 bits (195), Expect = 1.710e-15
Identity = 53/149 (35.57%), Postives = 84/149 (56.38%), Query Frame = 1
Query:   70 QKDGTRNILATEKMEYEECDNFMP-LLDGDVVYCPSVYDGDSFRLTWVHAGVKV---RIMGRLLGVDTAEMRGSSDEEKSLALRAKKRLEEAIAGKFVTIRNPSTEKYGRSLSDIEVDDIKSVTDYMLEDTEICRPYEGGKK---VSWD 495
            ++D  +NI      EY++   F+P ++ G V+    VYDGD+  +       +    R   RL G+D+AE++G +  EK +A+ A+ RL E I GK V ++  STEKYGR L+D+ ++D+  +  +ML D  +  PY+GG K     WD
Sbjct:   51 KRDSLKNI------EYKDTIQFVPPVMVGKVI---KVYDGDTITIASKLPNCETPIYRFSVRLSGIDSAEIKGKTANEKKIAIHARDRLHELIFGKMVHLKQLSTEKYGRILADVYLEDLH-INKWML-DNGLAVPYDGGTKNRPAEWD 188          
BLAST of mRNA_P-fluviatile_contig12.1323.1 vs. uniprot
Match: A0A6C0KJH3_9ZZZZ (TNase-like domain-containing protein n=2 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KJH3_9ZZZZ)

HSP 1 Score: 75.1 bits (183), Expect = 6.560e-14
Identity = 52/131 (39.69%), Postives = 73/131 (55.73%), Query Frame = 1
Query:  103 EKMEYEECDNFMP-LLDGDVVYCPSVYDGDSFRLTWVHA---GVKVRIMGRLLGVDTAEMRGSSDEEKSLALRAKKRLEEAIAGKFVTIRNPSTEKYGRSLSDIEVDDIKSVTDYMLEDTEICRPYEGGKK 483
            +K+ YE    F+P +  G VV    VYDGD+F L        G   R   RL G+DT E++G +  EK LA RA+  L   I  K V ++N  TEKYGR L+++ VDDI  + +YM+ +    + Y+GG K
Sbjct:   39 DKITYENTIPFIPPITSGKVV---KVYDGDTFTLASKLPNTDGPVYRFTVRLNGIDTPEIKGKTATEKELAKRARDALSSLIMNKIVILKNVDTEKYGRLLAEVYVDDIH-INNYMVVNKYAVK-YDGGTK 164          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q8QNB7_ESV1K1.790e-7363.25EsV-1-168 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPI6_ECTSI1.590e-6159.04EsV-1-168 (Partial) (Fragment) n=1 Tax=Ectocarpus ... [more]
Q6XLT1_9PHYC1.050e-3446.97FirrV-1-P2 n=1 Tax=Feldmannia irregularis virus a ... [more]
A0A6C0DG29_9ZZZZ5.290e-1736.53TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0LAK4_9ZZZZ5.490e-1738.24TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0HBW5_9ZZZZ5.500e-1738.51TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0DC43_9ZZZZ3.340e-1636.67TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0JH47_9ZZZZ5.920e-1634.38TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0JK33_9ZZZZ1.710e-1535.57TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0KJH3_9ZZZZ6.560e-1439.69TNase-like domain-containing protein n=2 Tax=viral... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:56188..56685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score71.6
Seed ortholog evalue3.8e-10
Seed eggNOG ortholog935840.JAEQ01000023_gene4309
EggNOG free text desc.Staphylococcal nuclease homologue
EggNOG OGs1N0I9@1224,2UBYJ@28211,43R5V@69277,COG1525@1,COG1525@2
COG Functional cat.L
Best tax levelPhyllobacteriaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-168 nuclease
Ec32 orthologEc-06_005250.1
Exons1
Model size498
Cds size498
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.41237-CDS-P-fluviatile_contig12:56187..566851622815491.41237-CDS-P-fluviatile_contig12:56187..56685Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 56188..56685 +
1693562052.17135-CDS-P-fluviatile_contig12:56187..566851693562052.17135-CDS-P-fluviatile_contig12:56187..56685Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 56188..56685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1323.1prot_P-fluviatile_contig12.1323.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 56188..56685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1323.1

>prot_P-fluviatile_contig12.1323.1 ID=prot_P-fluviatile_contig12.1323.1|Name=mRNA_P-fluviatile_contig12.1323.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=166bp
MFREVIKALPSIKRHLFTRMNTIQKDGTRNILATEKMEYEECDNFMPLLD
GDVVYCPSVYDGDSFRLTWVHAGVKVRIMGRLLGVDTAEMRGSSDEEKSL
ALRAKKRLEEAIAGKFVTIRNPSTEKYGRSLSDIEVDDIKSVTDYMLEDT
EICRPYEGGKKVSWD*
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mRNA from alignment at P-fluviatile_contig12:56188..56685+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1323.1 ID=mRNA_P-fluviatile_contig12.1323.1|Name=mRNA_P-fluviatile_contig12.1323.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=498bp|location=Sequence derived from alignment at P-fluviatile_contig12:56188..56685+ (Porterinema fluviatile SAG_2381)
ATGTTTCGAGAAGTCATCAAAGCGTTACCTTCAATAAAGAGGCATTTGTT TACAAGAATGAACACCATCCAAAAAGATGGTACTCGAAACATTCTTGCTA CGGAGAAGATGGAGTACGAAGAGTGTGATAATTTCATGCCTTTACTCGAC GGAGATGTTGTTTATTGCCCATCGGTATATGATGGAGATAGCTTCAGACT GACATGGGTGCATGCGGGGGTAAAAGTAAGGATAATGGGTCGTCTTTTGG GTGTGGACACAGCTGAGATGAGAGGGTCTTCCGATGAAGAGAAATCACTT GCGCTGAGAGCGAAAAAGAGACTAGAAGAAGCGATAGCGGGAAAGTTTGT TACTATTAGAAACCCTTCAACCGAGAAGTATGGAAGGAGTCTCAGCGATA TAGAAGTGGATGATATTAAATCCGTCACTGACTACATGCTCGAGGACACC GAAATTTGTCGTCCTTATGAAGGTGGAAAAAAGGTCTCTTGGGATTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:56188..56685+

>mRNA_P-fluviatile_contig12.1323.1 ID=mRNA_P-fluviatile_contig12.1323.1|Name=mRNA_P-fluviatile_contig12.1323.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=996bp|location=Sequence derived from alignment at P-fluviatile_contig12:56188..56685+ (Porterinema fluviatile SAG_2381)
ATGTTTCGAGAAGTCATCAAAGCGTTACCTTCAATAAAGAGGCATTTGTT
TACAAGAATGAACACCATCCAAAAAGATGGTACTCGAAACATTCTTGCTA
CGGAGAAGATGGAGTACGAAGAGTGTGATAATTTCATGCCTTTACTCGAC
GGAGATGTTGTTTATTGCCCATCGGTATATGATGGAGATAGCTTCAGACT
GACATGGGTGCATGCGGGGGTAAAAGTAAGGATAATGGGTCGTCTTTTGG
GTGTGGACACAGCTGAGATGAGAGGGTCTTCCGATGAAGAGAAATCACTT
GCGCTGAGAGCGAAAAAGAGACTAGAAGAAGCGATAGCGGGAAAGTTTGT
TACTATTAGAAACCCTTCAACCGAGAAGTATGGAAGGAGTCTCAGCGATA
TAGAAGTGGATGATATTAAATCCGTCACTGACTACATGCTCGAGGACACC
GAAATTTGTCGTCCTTATGAAGGTGGAAAAAAGGTCTCTTGGGATTGAAT
GTTTCGAGAAGTCATCAAAGCGTTACCTTCAATAAAGAGGCATTTGTTTA
CAAGAATGAACACCATCCAAAAAGATGGTACTCGAAACATTCTTGCTACG
GAGAAGATGGAGTACGAAGAGTGTGATAATTTCATGCCTTTACTCGACGG
AGATGTTGTTTATTGCCCATCGGTATATGATGGAGATAGCTTCAGACTGA
CATGGGTGCATGCGGGGGTAAAAGTAAGGATAATGGGTCGTCTTTTGGGT
GTGGACACAGCTGAGATGAGAGGGTCTTCCGATGAAGAGAAATCACTTGC
GCTGAGAGCGAAAAAGAGACTAGAAGAAGCGATAGCGGGAAAGTTTGTTA
CTATTAGAAACCCTTCAACCGAGAAGTATGGAAGGAGTCTCAGCGATATA
GAAGTGGATGATATTAAATCCGTCACTGACTACATGCTCGAGGACACCGA
AATTTGTCGTCCTTATGAAGGTGGAAAAAAGGTCTCTTGGGATTGA
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