mRNA_P-fluviatile_contig11.983.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.983.1
Unique NamemRNA_P-fluviatile_contig11.983.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.983.1 vs. uniprot
Match: D8LGF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF3_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 7.790e-46
Identity = 76/95 (80.00%), Postives = 85/95 (89.47%), Query Frame = 2 
Query:  374 GSATEQFRPCRRVLTPGFSGADHPRVQGLAKIQPPPRVTLRRTGLRTNAKASRRSGYNVPDPGLVMQSKHTVTDDTGRPARDRVSGELSLEKAFG 658
            GSATEQFRPCRRVLTPGFSG +  R QGLA+I+  PRVT R TGLRTNAKASRRSGY++PDPGLV+QSKH V DDTGRPA++RVSGEL+LEKAFG
Sbjct:    3 GSATEQFRPCRRVLTPGFSGTEEARPQGLARIESSPRVTPRPTGLRTNAKASRRSGYDIPDPGLVLQSKHVVMDDTGRPAKERVSGELTLEKAFG 97
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BLAST of mRNA_P-fluviatile_contig11.983.1 vs. uniprot
Match: A0A835YX95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX95_9STRA)

HSP 1 Score: 125 bits (315), Expect = 6.820e-31
Identity = 74/190 (38.95%), Postives = 102/190 (53.68%), Query Frame = 2 
Query:  275 LHDGFRYGERGGSPFPADPLLPDDRGRRHLTAEGSATEQFRPCRRVLTPGFSGADHPRVQ-GLAKIQPPP----RVTLRRTGLRTNAKASRRSGYNVPDPGLVMQSKHTVTDD--TGRPARDRVSGELSLEKAFGLKRRVTSQRAKRGDVPVRNSGDKLFHHVEYSPGFHQQGESIVGSSFYRTMPRRGG 823
            +H      +R  +P P +PL+ +D GR+H     S T  FRP  R+     +         G     P P    R    R GLR   + SRRSG+++PDP L +Q K  V  D  TG  A+D VSGEL+LE+ FG+K ++   R  R  +     GDKL+HHV+YSPGF+++G  +VGS+F R   R GG
Sbjct:    8 IHVNALTADRSQTPGPLEPLILNDNGRKHYRPNLSDTAAFRPHIRIDEQAKARRGREASPTGRKHFSPEPTGDGRAASARPGLRQIPELSRRSGFDMPDPDLSLQRKRVVVADAATGAFAKDHVSGELTLERTFGVKHKLAEMRGVRNAIAQACPGDKLYHHVDYSPGFYREGGHVVGSTFVRDAARVGG 197
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGF3_ECTSI7.790e-4680.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YX95_9STRA6.820e-3138.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:63500..68508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons8
Model size829
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.983.1prot_P-fluviatile_contig11.983.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 63565..66852 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815424.6192935-UTR-P-fluviatile_contig11:63499..635641622815424.6192935-UTR-P-fluviatile_contig11:63499..63564Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 63500..63564 +
1693561804.2492201-UTR-P-fluviatile_contig11:63499..635641693561804.2492201-UTR-P-fluviatile_contig11:63499..63564Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 63500..63564 +
1622815424.6898494-UTR-P-fluviatile_contig11:66852..669261622815424.6898494-UTR-P-fluviatile_contig11:66852..66926Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 66853..66926 +
1693561804.3201218-UTR-P-fluviatile_contig11:66852..669261693561804.3201218-UTR-P-fluviatile_contig11:66852..66926Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 66853..66926 +
1622815424.7001853-UTR-P-fluviatile_contig11:67441..675291622815424.7001853-UTR-P-fluviatile_contig11:67441..67529Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 67442..67529 +
1693561804.3281326-UTR-P-fluviatile_contig11:67441..675291693561804.3281326-UTR-P-fluviatile_contig11:67441..67529Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 67442..67529 +
1622815424.7117214-UTR-P-fluviatile_contig11:67732..678771622815424.7117214-UTR-P-fluviatile_contig11:67732..67877Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 67733..67877 +
1693561804.3385694-UTR-P-fluviatile_contig11:67732..678771693561804.3385694-UTR-P-fluviatile_contig11:67732..67877Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 67733..67877 +
1622815424.7224507-UTR-P-fluviatile_contig11:68480..685081622815424.7224507-UTR-P-fluviatile_contig11:68480..68508Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 68481..68508 +
1693561804.352812-UTR-P-fluviatile_contig11:68480..685081693561804.352812-UTR-P-fluviatile_contig11:68480..68508Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 68481..68508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815424.633112-CDS-P-fluviatile_contig11:63564..636381622815424.633112-CDS-P-fluviatile_contig11:63564..63638Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 63565..63638 +
1693561804.27304-CDS-P-fluviatile_contig11:63564..636381693561804.27304-CDS-P-fluviatile_contig11:63564..63638Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 63565..63638 +
1622815424.642125-CDS-P-fluviatile_contig11:63821..638841622815424.642125-CDS-P-fluviatile_contig11:63821..63884Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 63822..63884 +
1693561804.2840734-CDS-P-fluviatile_contig11:63821..638841693561804.2840734-CDS-P-fluviatile_contig11:63821..63884Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 63822..63884 +
1622815424.6530535-CDS-P-fluviatile_contig11:63905..639421622815424.6530535-CDS-P-fluviatile_contig11:63905..63942Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 63906..63942 +
1693561804.2926688-CDS-P-fluviatile_contig11:63905..639421693561804.2926688-CDS-P-fluviatile_contig11:63905..63942Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 63906..63942 +
1622815424.6659756-CDS-P-fluviatile_contig11:66061..661451622815424.6659756-CDS-P-fluviatile_contig11:66061..66145Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 66062..66145 +
1693561804.3042138-CDS-P-fluviatile_contig11:66061..661451693561804.3042138-CDS-P-fluviatile_contig11:66061..66145Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 66062..66145 +
1622815424.6781728-CDS-P-fluviatile_contig11:66681..668521622815424.6781728-CDS-P-fluviatile_contig11:66681..66852Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 66682..66852 +
1693561804.3120728-CDS-P-fluviatile_contig11:66681..668521693561804.3120728-CDS-P-fluviatile_contig11:66681..66852Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 66682..66852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.983.1

>prot_P-fluviatile_contig11.983.1 ID=prot_P-fluviatile_contig11.983.1|Name=mRNA_P-fluviatile_contig11.983.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=143bp
MQHGEGQDFVTQDPVCTKCPSHGASSPRQFLMREQALTLFWLRIKGECSS
ASSGHVADTSSRVLAIRIVCCTTGFDTAREEEALSQPTPSCRTTEVGGTL
PRKDLPPSNFARVEGFSRQDSRGRTTLACRAWRRSSPRRGSL*
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mRNA from alignment at P-fluviatile_contig11:63500..68508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.983.1 ID=mRNA_P-fluviatile_contig11.983.1|Name=mRNA_P-fluviatile_contig11.983.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5009bp|location=Sequence derived from alignment at P-fluviatile_contig11:63500..68508+ (Porterinema fluviatile SAG_2381)
GGACGGGATAGTGTGTGCATGTGGGCCCTGAAAACCCTTCTTGGCCCCTT
TCAAGCCGCAAGTGCATGCAGCATGGAGAAGGCCAAGACTTTGTAACTCA
AGACCCCGTGTGTACCAAGTGTCCGTCCCACGGCGCGAGGTGAAACCGTC
GAGCCGCGCGCACGCGAAAACAAGCTGCTGTAGGTAGTGTGTACGACGTG
CTCATCTTTCTTCCCCTCCGCCCCCACCCCCAACCCCCGACTCTCTCTTG
CTCGAGTGCGCACACGACGGCCGTACTCCCCATAAAGCTCATCCTCTCAC
GTATCCGCCCGCCTACATGCAGTTCTCCGCGCCAATTTCTCATGCGCGAA
CAAGCGTTGACCCTGTTCTGGCTCAGGATCAAGGGGCTCGCGCAATGGTT
GACCAGCGAGTGCAGCAGCGCCAGCAGCGGTCATGTCGCCGACGTGAGTT
TGTTGGTGTTGTCATTGCGCCGCATTCATAATCTGCACTGGCCGGTCGGC
AGTCGGCAGCGATGCCGTACGCATGCATAGGCAGAAAGGCCTCACACAGA
CTAGACTATATTTATGTACGCGCATGCAGCGCCACATCAGCATATGGAGT
TTCGATGCTCCAAAGCTTGACGCTTTACGTAGTTTTTTCTCTCAAACATG
AATTCAATTATGACCAAGACCATCATTCATCGAGGACCGCAAGCAACGGT
GAGGAAACTAACCGATGACTTTCAAATGGAGCACAGTCTAGACTGCACAG
CCTGTAAGATACTGCGCGAATCTTGTGCGATTGGTACCGAATGATGACGT
GCAACGGGGCTCATTTACATTATTGAAATCGAAACCTGGAACTGCATAGA
ATCGTTGGTGCGCTTGTTTATTGAACCGAATTCAACCTACAGTGAATGGT
AATAAAGACATACGGTCAGGTTGCATCGCTTTCTACACTACAACAATGTT
GCAACGTAGTGCCGGCCCTTTCGTACGAAATGACTTCGTGAGAAATTGAG
ACTGAGATTTTTGACAAATTTGAGACAATGTGCGTAACGAGTTGGTGTTA
TGCGACGGAGAGTGGTACTCGAAGCAAGAAATAGACCACGTGCTCGACTC
CTCAGAAACAAGAAACGCAGGAAGTTAGCCGCAGGAAAAAGAAATTGACA
AGCATGCACACAGTCGGCGTACCCCTCCAATTTCACAGCAAGGACGGGTG
GGTACGGATCTACCCGAGATGGTGTCGACGGACCTCCCGTCTTCCTTGCA
TGTGACACAATACAAATGCAGCAAATAAGAAATCAATGATACTCTCGCCA
ATACAAAAAAAAATGGCGACATAAAGCATCACGCCATAAATCGTGGCATC
GTTCGGATACTTTCGCTGGTTCCTCCATCCCATGGAGTCTTCACCTCACC
AAAAGCCGCGCCCGGCAACGCCCATCGGTCGTTCGGTTACGATAGTATAC
TCTCATCGCGGGGGGGACCGGCTCTTGTGAGTTTCTGATGGTAATCCATC
ATTTCATTGTGCGAATATATGTAGATGCGCAGCCGTGACTGACAATAAAG
CGTCGGACATCCCTGTCGTCCCTCGGGTAGGAAACGCGTTGCACCCTCAT
ATCGGCCAATAATCCGCAAATCTTTCCGGAGGTCCGCAGCTTGGCGCGCA
CGCCTCTTTGGATCTTGTGTGTGAGAATGGCGAGGAGAAGTCGATTTCGT
TGTCGCGCGCGTGTTCAGATCTTTCGGCACCGACTGTGCTCTCGTACAAA
AAGGGGGTGGTCTGTTCTGCGAACGGGGTACCGTGTACAAGATGGGGTAA
GATATTAACTTTAAAATGAAAGGGGGGGTTGCCCCCTGTTATCCGAGGCA
AAAAAATAGAGTTTGCTTATATGCTGGCCAGGAACCTTGGGTCCATGCCG
AAGACGTCAGAAAGCGACTTGAAGGTAATCTGGCGGAGTACGGTGGCGCG
CTCCGGAGCGAAAAATAGGATACCCCCTTTTTTTTCACAAAAGCAGGGGG
TATACCCCTTTTTGTCAATTCGCCAAAAACGAGGTCAAAGCAGCGGCGGC
AGTAAGAATTTGAGTCTCAGCCAAAGTAGGTATGTCTTATGAGCGGGCCG
GCACGGGACTTCAAACCTTGATGTTTAGCGCGACAGTGAAAGTGGAACAC
CTGCGATCCTGGCGATACGACCCGTTGCCCGTGCTCTGATTTAAATCTTG
AAAGCGTCTGTTTCCTGGCTCCTAAGTCCGAGCACTAAAACGCCTCGGCC
CGCTTACCGCAACGACCTTGTGGCATAGGCGGAGAAGGTAATTAGGCAAA
TTCCATCCGGCTACGACTCCACAGTACTAGCGAGATTTGTGTACAGTATT
CTGCTACTCCACACTGATGCTCGTGCCATTCATACAGTTCTCGTGAAATG
ACTTTGAAAACTTATGCATACCTCACCCTTCCTCTTAGGAAAATTTGATA
AAGCGTTCGAGTGGATCCTACTGCTTTTTGTGGTGGCGGGGATCCGCAGG
CTCAAGCATCAAATACTTGGATGTTTCGACGCGTGCATGCTTGAAATTTC
ATGCGTGCGAAGACATCATCCAGGGTGCTCGCGATCCGAATAGTCTGCTG
CACGACGGGTTTCGATACGGCGAGAGAGGAGGAAGCCCTTTCCCAGGCGA
GTTTCAATGTGCAGAATGCTTGCCAGACTCGTTTTTCTTTTACGTCGTCC
CTTTGGTTGAGAGCGTATCGATGTCTGGCGCTTGCCCAGGTCAAAGTCCC
TAGAAATGTGATGCATGAATATCACGAGCAGCACACCGTTGGTACGGCTG
CAATCTTTCAAGAGAGTTTCAAAGCACGCCCTACGCCCAGGTCCCGACTG
ATGGGCCTGAACAAGTTTTGTACAGCAGCCACGATCGACGTTTGGTCACT
CGGCCAAGGGTGACAAACGTTTCGCCGATCACGTGATATCGGTGACCGCA
ACCGCGACCACGTGATATCGGTTTGGGGAGATCCAAGGCTTCCTTACTTC
TCCACGTGTTCATGCGAAAACATGCGTCACCTCCGTGGTCAGTGGCAGTA
GAAGACTCGAGCCGCTTCGTCCCGATTCATTTCGGGTACCATCAATGGGG
ACCGCCACGCCCAATTGTCGCCAAATCTGATCTAATGCGCGCCACATATC
GTTGTTGTCGCCCTCACCGCCACCTTTAAAAGCCGACCCCCTCCTGCCGG
ACGACCGAGGTCGGCGGCACCTTACCGCGGAAGGATCTGCCACCGAGCAA
TTTCGCCCGTGTCGAAGGGTTCTCACGCCAGGATTCTCGGGGGCGGACCA
CCCTCGCGTGCAGGGCCTGGCGAAGATCCAGCCCCCGCCGCGGGTCACTC
TGAGGCGGACGGGCCTTCGAACCAACGCGAAAGCTTCGCGGAGATCGGGG
TACAATGTCCCCGACCCAGGACTCGTGGTGCGTGAAGCAAAATATTCCCT
CAATTTAAATGTGGCAGCCAGAGCAGCAGTGCCCCCACGCCGTCCTTGCA
AGAGACGCCGAATGACACTAACAAACTCTGCGTCGATGACTTAGGCGAGG
ACAATGGTTAATGGGTAGGTACAACCGCAAATGAAAAATCAACATCGATG
GCTCTGCAAATAGGAAAGGTTCGCTTGCAACCCGCGCGCAACGCCTGCAA
AAGTATATTAAGAAGTTGATCCCGACGAGCACTTGATTGTCGACGCATTT
ATTCCAACTGCTTCAACACAACTGATATGAAAACTACCGTTCAGGTCAAA
CACAACGCCGAAATCGTTTGGGGTGGGCATCCTCTTGAGAGCTCGCGTTT
CGGTGCTTCACCCTCGCCGGAAGTGCGCTCATGAAATATTTTTGCGAATG
AACTCTGGTCATTTTGACGTTTTGTACACTACAAACTTAATCCTGATAGT
CCTTGCTCCTGTATGGGTCGCCATCGCCATATTGACATTCAGATGCAATC
CAAGCACACGGTCACGGATGACACGGGCCGCCCCGCCAGGGATCGCGTGT
CCGGAGAGCTCAGCTTGGAAAAGGCCTTCGGTGAGAGATCTTGACCAGCG
CTCGCATGACTGCGTGTCCACGCCGGTTACGTGTTGACGGAACTTTACCT
TCGCCAATTTATGCGTCACCACTGCCGGAACTCGTCCTTGAGAACAAGCG
ACAAGAAGGGTGCGGCCATTTTCAGGGCAGCTCAAGACGCCTCGTTAAGG
TCGGGATGTTTGTCGCTTTGCAATTACCCACAGGCTTGAAACGCAGGGTA
ACTTCCCAGCGGGCAAAGCGTGGCGATGTGCCTGTGAGAAACAGTGGGGA
TAAGCTATTTCATCATGTGGAATACTCACCAGGCTTTCACCAACAGGGGG
AAAGTATTGTCGGAAGCTCATTCTACAGGTACGGTTACTATTGGGGAGGG
AATTTTCACTCTTCCCCGGGCTTCACTGCGACATGTTTCGTGGGTCGATT
GCATGATGTGTGTTGACCTGACCTTTTGCTGGCTCTTGTTTTTTCCCGTT
ATGACCGTCCGGGGTTCCATACTTCACCACCCTGTAGCAGTACCAACGGA
ACCGGCTTGCAAGACCCGGGTCCCGAGCACGCCGCCGCAAAATTCTCACT
TTTCTGCCTTTCTTGTTCGCGAACAACAATCACGCTTCCCTAGGAGGCCC
TCCCCCTGGTCCAAGCTATATTCACAGGCTCATTAGGTGCCCTCATGTTA
GGGGTGCATGAAAACTCGGTCAGGCAAAGCTGGCGCGCACACTGTGTATG
TAAGTCTGCACCCACTGTCTGAGACGTAAGCCCTTGCACGTACTTTTCGA
CCAGACCTAGAGATAAGTGCCCCGCACGTCTTTAGCCCGCTGCTCAGTCA
GAGAAATCGACCTCCGACATACCTTTTGTGTGTCTGTTTTGTTGCTTCGT
GTTTCAATCGTCCGAAGCTTCCGAAACATCGTTTCTTGAACGTTTTTCAG
CCGATGCCCCATCATGTGTCTTGGATCCCAGGACGATGCCTCGACGTGGC
GGGGAGCAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:63500..68508+

>mRNA_P-fluviatile_contig11.983.1 ID=mRNA_P-fluviatile_contig11.983.1|Name=mRNA_P-fluviatile_contig11.983.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=858bp|location=Sequence derived from alignment at P-fluviatile_contig11:63500..68508+ (Porterinema fluviatile SAG_2381)
ATGCAGCATGGAGAAGGCCAAGACTTTGTAACTCAAGACCCCGTGTGTAC
CAAGTGTCCGTCCCACGGCGCGAGATGCAGCATGGAGAAGGCCAAGACTT
TGTAACTCAAGACCCCGTGTGTACCAAGTGTCCGTCCCACGGCGCGAGTT
CTCCGCGCCAATTTCTCATGCGCGAACAAGCGTTGACCCTGTTCTGGCTC
AGGATCAAGGGTTCTCCGCGCCAATTTCTCATGCGCGAACAAGCGTTGAC
CCTGTTCTGGCTCAGGATCAAGGGCGAGTGCAGCAGCGCCAGCAGCGGTC
ATGTCGCCGACCGAGTGCAGCAGCGCCAGCAGCGGTCATGTCGCCGACAC
ATCATCCAGGGTGCTCGCGATCCGAATAGTCTGCTGCACGACGGGTTTCG
ATACGGCGAGAGAGGAGGAAGCCCTTTCCCAGACATCATCCAGGGTGCTC
GCGATCCGAATAGTCTGCTGCACGACGGGTTTCGATACGGCGAGAGAGGA
GGAAGCCCTTTCCCAGCCGACCCCCTCCTGCCGGACGACCGAGGTCGGCG
GCACCTTACCGCGGAAGGATCTGCCACCGAGCAATTTCGCCCGTGTCGAA
GGGTTCTCACGCCAGGATTCTCGGGGGCGGACCACCCTCGCGTGCAGGGC
CTGGCGAAGATCCAGCCCCCGCCGCGGGTCACTCTGACCGACCCCCTCCT
GCCGGACGACCGAGGTCGGCGGCACCTTACCGCGGAAGGATCTGCCACCG
AGCAATTTCGCCCGTGTCGAAGGGTTCTCACGCCAGGATTCTCGGGGGCG
GACCACCCTCGCGTGCAGGGCCTGGCGAAGATCCAGCCCCCGCCGCGGGT
CACTCTGA
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