mRNA_P-fluviatile_contig11.1313.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1313.1
Unique NamemRNA_P-fluviatile_contig11.1313.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.1313.1 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.630e-26
Identity = 54/60 (90.00%), Postives = 56/60 (93.33%), Query Frame = 3 
Query:    3 DNDAKTDMMRTFRRAAYAATPEAFATQVARLETLVAGKKCEGYMTDLIANKTKWAFCCRP 182
            DNDAKTDM+RTFRRAAYAATPEAFATQ ARL+TLVAGKKCE YMTDLI NKTKWAFC RP
Sbjct:  322 DNDAKTDMLRTFRRAAYAATPEAFATQAARLKTLVAGKKCEDYMTDLITNKTKWAFCWRP 381
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BLAST of mRNA_P-fluviatile_contig11.1313.1 vs. uniprot
Match: D7G4F0_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F0_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 4.970e-23
Identity = 49/60 (81.67%), Postives = 51/60 (85.00%), Query Frame = 3 
Query:    3 DNDAKTDMMRTFRRAAYAATPEAFATQVARLETLVAGKKCEGYMTDLIANKTKWAFCCRP 182
            +ND KTDMMR FR AA AATPE FATQVARLE LVAGKKCEGY+ DLI NK KWAFCCRP
Sbjct:  309 NNDDKTDMMRCFRNAADAATPEVFATQVARLEQLVAGKKCEGYIADLIKNKAKWAFCCRP 368
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BLAST of mRNA_P-fluviatile_contig11.1313.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 7.490e-23
Identity = 48/59 (81.36%), Postives = 50/59 (84.75%), Query Frame = 3 
Query:    6 NDAKTDMMRTFRRAAYAATPEAFATQVARLETLVAGKKCEGYMTDLIANKTKWAFCCRP 182
            ND KTDMM+ FR  AYAATPE F TQVARLE LVAGKKCEGY+ DLI NKTKWAFCCRP
Sbjct:  708 NDDKTDMMQCFRNEAYAATPEVFGTQVARLEQLVAGKKCEGYIADLIKNKTKWAFCCRP 766
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BLAST of mRNA_P-fluviatile_contig11.1313.1 vs. uniprot
Match: A0A6H5L372_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L372_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 5.160e-22
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 3 
Query:    6 NDAKTDMMRTFRRAAYAATPEAFATQVARLETLVAGKKCEGYMTDLIANKTKWAFCCR 179
            ND KTDMMR FR  A+AATPE F TQVARLE LVAGKKCEGY+ DLI NKTKWAFCCR
Sbjct:   96 NDDKTDMMRCFRNEAFAATPEVFGTQVARLEQLVAGKKCEGYIADLIKNKTKWAFCCR 153
[Close]
BLAST of mRNA_P-fluviatile_contig11.1313.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 8.000e-21
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 3 
Query:    3 DNDAKTDMMRTFRRAAYAATPEAFATQVARLETLVAGKKCEGYMTDLIANKTKWAFCCRP 182
            +ND KTDMMR F+ AA+AATPE F TQVARLE LVAGKKCE Y+ DLI NKTKWAF CRP
Sbjct: 1001 NNDDKTDMMRCFKNAAFAATPEVFGTQVARLEHLVAGKKCEAYIADLIKNKTKWAFYCRP 1060
[Close]
BLAST of mRNA_P-fluviatile_contig11.1313.1 vs. uniprot
Match: A0A6H5KKN6_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN6_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.750e-15
Identity = 48/108 (44.44%), Postives = 52/108 (48.15%), Query Frame = 3 
Query:    3 DNDAKTDMMRTFRRAAYAATPEA------------------------------------------------FATQVARLETLVAGKKCEGYMTDLIANKTKWAFCCRP 182
            +ND KTDMMR FR AA+AATPE                                                 F TQVARLE LVAGKKC+GY+ DLI NKTKWAFCCRP
Sbjct:   85 NNDDKTDMMRCFRNAAFAATPEVRWQSLVRCRHTTPPREWIGLPHQFAPPQRAVNITFDVSCVYHCIRWHVFGTQVARLEQLVAGKKCKGYIADLIKNKTKWAFCCRP 192
[Close]
BLAST of mRNA_P-fluviatile_contig11.1313.1 vs. uniprot
Match: A0A6H5JXC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC0_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 5.100e-15
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 3 
Query:   69 AFATQVARLETLVAGKKCEGYMTDLIANKTKWAFCCRP 182
            AF+TQ ARLETLVAGKKCEGYMTDLI NKTKWAFCCRP
Sbjct:  101 AFSTQAARLETLVAGKKCEGYMTDLITNKTKWAFCCRP 138
[Close]
BLAST of mRNA_P-fluviatile_contig11.1313.1 vs. uniprot
Match: A0A6H5JBV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 7.050e-15
Identity = 39/58 (67.24%), Postives = 42/58 (72.41%), Query Frame = 3 
Query:    9 DAKTDMMRTFRRAAYAATPEAFATQVARLETLVAGKKCEGYMTDLIANKTKWAFCCRP 182
            D + D+M    RA       AFATQ AR+ETLVAGKKCEGYMTDLI NKTKW FCCRP
Sbjct:  242 DEEEDVMHRLTRA----HTRAFATQAARMETLVAGKKCEGYMTDLITNKTKWTFCCRP 295
[Close]
BLAST of mRNA_P-fluviatile_contig11.1313.1 vs. uniprot
Match: A0A6H5KWJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWJ6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 9.720e-15
Identity = 47/108 (43.52%), Postives = 51/108 (47.22%), Query Frame = 3 
Query:    3 DNDAKTDMMRTFRRAAYAATPEA------------------------------------------------FATQVARLETLVAGKKCEGYMTDLIANKTKWAFCCRP 182
            +ND KTDMMR FR AA+AA PE                                                 F TQVARLE LVAGKKC+GY+ DLI NKTKWAFCCRP
Sbjct:  141 NNDDKTDMMRCFRNAAFAAPPEVRWQSLVRCRHTTPPREWIGLPHQFAPPQRAVNITFDVSCVYHCIRWQVFGTQVARLEQLVAGKKCKGYIADLIKNKTKWAFCCRP 248
[Close]
BLAST of mRNA_P-fluviatile_contig11.1313.1 vs. uniprot
Match: A0A6H5KB76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB76_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.500e-14
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 3 
Query:    3 DNDAKTDMMRTFRRAAYAATPEAFATQVARLETLVAGKKCEGYMTDLIANK 155
            +ND KTDMMR FR AAYAATPE F TQVARLE LVAGKKCEGY+ +LI  +
Sbjct:  371 NNDDKTDMMRCFRNAAYAATPEVFGTQVARLEQLVAGKKCEGYIANLIKRR 421
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KWM8_9PHAE1.630e-2690.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G4F0_ECTSI4.970e-2381.67MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KBY4_9PHAE7.490e-2381.36SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L372_9PHAE5.160e-2281.03SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K9T1_9PHAE8.000e-2176.67SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KKN6_9PHAE2.750e-1544.44SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JXC0_9PHAE5.100e-1592.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV0_9PHAE7.050e-1567.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWJ6_9PHAE9.720e-1543.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB76_9PHAE2.500e-1474.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3697266..3697821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size232
Cds size207
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1313.1prot_P-fluviatile_contig11.1313.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3697289..3697821 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815484.801555-UTR-P-fluviatile_contig11:3697265..36972881622815484.801555-UTR-P-fluviatile_contig11:3697265..3697288Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3697266..3697288 +
1693562040.8942847-UTR-P-fluviatile_contig11:3697265..36972881693562040.8942847-UTR-P-fluviatile_contig11:3697265..3697288Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3697266..3697288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815484.815065-CDS-P-fluviatile_contig11:3697288..36973331622815484.815065-CDS-P-fluviatile_contig11:3697288..3697333Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3697289..3697333 +
1693562040.9061449-CDS-P-fluviatile_contig11:3697288..36973331693562040.9061449-CDS-P-fluviatile_contig11:3697288..3697333Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3697289..3697333 +
1622815484.8257446-CDS-P-fluviatile_contig11:3697524..36976041622815484.8257446-CDS-P-fluviatile_contig11:3697524..3697604Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3697525..3697604 +
1693562040.914976-CDS-P-fluviatile_contig11:3697524..36976041693562040.914976-CDS-P-fluviatile_contig11:3697524..3697604Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3697525..3697604 +
1622815484.838267-CDS-P-fluviatile_contig11:3697739..36978211622815484.838267-CDS-P-fluviatile_contig11:3697739..3697821Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3697740..3697821 +
1693562040.9296627-CDS-P-fluviatile_contig11:3697739..36978211693562040.9296627-CDS-P-fluviatile_contig11:3697739..3697821Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3697740..3697821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1313.1

>prot_P-fluviatile_contig11.1313.1 ID=prot_P-fluviatile_contig11.1313.1|Name=mRNA_P-fluviatile_contig11.1313.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=69bp
MMRTFRRAAYAATPEAFATQVARLETLVAGKKCEGYMTDLIANKTKWAFC
CRPCPHARHGCHSAHGRFI
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mRNA from alignment at P-fluviatile_contig11:3697266..3697821+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1313.1 ID=mRNA_P-fluviatile_contig11.1313.1|Name=mRNA_P-fluviatile_contig11.1313.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=556bp|location=Sequence derived from alignment at P-fluviatile_contig11:3697266..3697821+ (Porterinema fluviatile SAG_2381)
CTGACAATGACGCCAAGACCGACATGATGCGTACCTTTAGACGCGCAGCG
TATGCGGCTACTCCGGAGGTGCGATACCAGTTCATCGTGTTTTCCCCGCT
ACAAGATGGCCCCAGACGTGTATCGGTCTATCACACCCCTTGACCGAGAC
ATAACGAGCCGTAGACATCAGTTGTGGCGGCGCATCAGCGTACAAAGGAC
CTAGCTGGATAGGGTCACTGATTCCACATAATGTTTCATCCATTTGGGTT
TGGCGGCAGGCGTTCGCGACGCAAGTGGCTCGGTTGGAAACCCTGGTGGC
CGGGAAGAAGTGCGAAGGTTACATGACCGACTTGATAGCGTGAGTATGTT
CCAGCTATTTAGTTGGGGGACATGCCTGCATTCGGTTGATATGATGGGTT
GAAGTATGATGGCCACGTCTCTACGGTCAAAATTCGCCAATTCGCTATAT
TGTCGGCGCCGTTGATGTGCGCAGAAACAAGACGAAGTGGGCGTTCTGCT
GCCGGCCCTGTCCTCACGCTAGGCATGGTTGCCACTCAGCGCACGGAAGG
TTTATT
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:3697266..3697821+

>mRNA_P-fluviatile_contig11.1313.1 ID=mRNA_P-fluviatile_contig11.1313.1|Name=mRNA_P-fluviatile_contig11.1313.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=414bp|location=Sequence derived from alignment at P-fluviatile_contig11:3697266..3697821+ (Porterinema fluviatile SAG_2381)
ATGATGCGTACCTTTAGACGCGCAGCGTATGCGGCTACTCCGGAGATGAT
GCGTACCTTTAGACGCGCAGCGTATGCGGCTACTCCGGAGGCGTTCGCGA
CGCAAGTGGCTCGGTTGGAAACCCTGGTGGCCGGGAAGAAGTGCGAAGGT
TACATGACCGACTTGATAGCGCGTTCGCGACGCAAGTGGCTCGGTTGGAA
ACCCTGGTGGCCGGGAAGAAGTGCGAAGGTTACATGACCGACTTGATAGC
AAACAAGACGAAGTGGGCGTTCTGCTGCCGGCCCTGTCCTCACGCTAGGC
ATGGTTGCCACTCAGCGCACGGAAGGTTTATTAAACAAGACGAAGTGGGC
GTTCTGCTGCCGGCCCTGTCCTCACGCTAGGCATGGTTGCCACTCAGCGC
ACGGAAGGTTTATT
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