mRNA_P-fluviatile_contig11.1305.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1305.1
Unique NamemRNA_P-fluviatile_contig11.1305.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.1305.1 vs. uniprot
Match: D7G0G1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G1_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 5.290e-7
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 2 
Query:  323 RRLRVRKMSKKWATRSARNESFISGAKKLGSGGQWREVLRQLDQLTEDGIP 475
            R++RVRK+SK+ A R+ R+ SFIS AK  G+ GQWREVLR LD++ EDGIP
Sbjct:    6 RKIRVRKVSKRIA-RTTRHNSFISTAKVRGARGQWREVLRLLDKMAEDGIP 55
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0G1_ECTSI5.290e-762.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3538353..3539866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog2880.D7G0G1
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-16_000540.1
Exons2
Model size946
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1305.1prot_P-fluviatile_contig11.1305.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3538399..3539398 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815481.8616128-UTR-P-fluviatile_contig11:3538352..35383981622815481.8616128-UTR-P-fluviatile_contig11:3538352..3538398Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3538353..3538398 +
1693562027.1725416-UTR-P-fluviatile_contig11:3538352..35383981693562027.1725416-UTR-P-fluviatile_contig11:3538352..3538398Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3538353..3538398 +
1622815481.8923514-UTR-P-fluviatile_contig11:3539398..35398661622815481.8923514-UTR-P-fluviatile_contig11:3539398..3539866Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3539399..3539866 +
1693562027.198383-UTR-P-fluviatile_contig11:3539398..35398661693562027.198383-UTR-P-fluviatile_contig11:3539398..3539866Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3539399..3539866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815481.8725178-CDS-P-fluviatile_contig11:3538398..35386711622815481.8725178-CDS-P-fluviatile_contig11:3538398..3538671Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3538399..3538671 +
1693562027.1832573-CDS-P-fluviatile_contig11:3538398..35386711693562027.1832573-CDS-P-fluviatile_contig11:3538398..3538671Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3538399..3538671 +
1622815481.8825624-CDS-P-fluviatile_contig11:3539239..35393981622815481.8825624-CDS-P-fluviatile_contig11:3539239..3539398Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3539240..3539398 +
1693562027.1907144-CDS-P-fluviatile_contig11:3539239..35393981693562027.1907144-CDS-P-fluviatile_contig11:3539239..3539398Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3539240..3539398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1305.1

>prot_P-fluviatile_contig11.1305.1 ID=prot_P-fluviatile_contig11.1305.1|Name=mRNA_P-fluviatile_contig11.1305.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=144bp
MQLSHEPWPRASAKYLCSAFNAAQHKVQGFSLGNETRLTRRRPRSCHAVG
DGHDRVAHGGSVVGNQGEAAASTPASMQGQNAETGNQQHKQPRRLRVRKM
SKKWATRSARNESFISGAKKLGSGGQWREVLRQLDQLTEDGIP*
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mRNA from alignment at P-fluviatile_contig11:3538353..3539866+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1305.1 ID=mRNA_P-fluviatile_contig11.1305.1|Name=mRNA_P-fluviatile_contig11.1305.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1514bp|location=Sequence derived from alignment at P-fluviatile_contig11:3538353..3539866+ (Porterinema fluviatile SAG_2381)
CGCTACGACGCACAGGCAACAACCACCCGCTGTGCAGAGGGATGCGATGC
AACTGTCACATGAACCATGGCCTAGAGCCTCTGCGAAATATTTATGCTCG
GCATTCAATGCTGCTCAGCACAAGGTTCAAGGATTCTCGCTTGGAAATGA
AACTCGACTGACGCGGAGGAGGCCTCGCTCGTGTCACGCCGTTGGGGACG
GACATGATCGTGTAGCACACGGCGGTAGTGTTGTCGGAAACCAAGGAGAA
GCGGCGGCGAGCACACCGGCGTCGATGCAAGGACAGAATGCGGAAACGGG
TAACCAACAACATAAACAAGTGCGTCAACACTCCATCATGTGTGTCATGC
AAACGTAAGCGCCCTCGTGGGGTACGCCCACACCTCCGCGCCCTCTTCTG
CACGGCTTCCACCAGTTGTTGATTCACAAAGCTATCCTTATTCCTGCCGA
TCGATCTCTGAAGTGTTTGACCTCCCACCATCATTGCCCATGTGTCGGGC
GAAAAAAATTCTCTGCAGCCGCTCCCCCACGTTGTTGTTGATCGAGGCTC
CGCAACTTTGCGTCAAACCTGCTTGGCGACAGCAGTGCCGCACATGTGCA
GCAGAACTGCTTTTGCTTCCACATCTCTTTCGCCGAGCAACACTGTCCTG
AAGGCGAGAGGAGGCGGATAATAGGTGGTCATGGGCTGCAGCTTGGTGCG
AGTTGGTTTCCGTAAATAACTATGAGGACGGCGTTGCCAAACAGCACGAA
CATGCTGCAGACTCGCCCTTGACATAAGAGTTGGTACCGGCTCGCAGGAG
CGACATGTTGTCAAAGACCAAGCGACGCAATAAAACGGACGACGTTTGCT
AATGACGGCTAGCTTTGCCTCGCCACCTCAAAAGCAGCCTCGAAGGCTCC
GCGTCAGAAAGATGTCAAAGAAGTGGGCCACCCGGTCCGCAAGAAACGAA
TCGTTTATCAGCGGGGCGAAGAAGTTGGGTTCGGGGGGTCAGTGGCGCGA
AGTTTTGAGACAACTCGACCAACTAACCGAGGACGGCATCCCCTGAACAG
CTACATCTACAACTCCGCCATGAGCTCGATCGCCAAGAGTGGACGGTGAG
AGAATGTGGTGGTGACCAAGTTATTGGAAAGGGGATTGGCGGCCAATTTG
ACGTGGGCGCACATCCTGGGCTCTGAGCTTCTTGTTGCATACTCTCGGAG
TATTTTTCAAGGAGGATAAGGAATTGGTCGTCGACCCGCATCGCGCTGGG
AAGAATGAAGTGCCTCACCCAGCAGCAGTCATGATTGCACGAGATTGTAA
TTTGCGCGTGCCCTAGGCCCCACATTCAAGTGCAGCGAACCGTCGAGTTC
TGTACGACCTTGTTTCAATACAGCGAGCCTGTCTCATACGCTCGATCTCA
ATCTCGCATTTCGGTTGGTTCTTGTGCACAGGTGGCGAGAGGCGCTGGGT
TTGCGCGACCGGATGCTAGCCGAGGGCATCAGGCCTGACGGATATTCTTT
CAACGCTCTGATCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:3538353..3539866+

>mRNA_P-fluviatile_contig11.1305.1 ID=mRNA_P-fluviatile_contig11.1305.1|Name=mRNA_P-fluviatile_contig11.1305.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=864bp|location=Sequence derived from alignment at P-fluviatile_contig11:3538353..3539866+ (Porterinema fluviatile SAG_2381)
ATGCAACTGTCACATGAACCATGGCCTAGAGCCTCTGCGAAATATTTATG
CTCGGCATTCAATGCTGCTCAGCACAAGGTTCAAGGATTCTCGCTTGGAA
ATGAAACTCGACTGACGCGGAGGAGGCCTCGCTCGTGTCACGCCGTTGGG
GACGGACATGATCGTGTAGCACACGGCGGTAGTGTTGTCGGAAACCAAGG
AGAAGCGGCGGCGAGCACACCGGCGTCGATGCAAGGACAGAATGCGGAAA
CGGGTAACCAACAACATAAACAAATGCAACTGTCACATGAACCATGGCCT
AGAGCCTCTGCGAAATATTTATGCTCGGCATTCAATGCTGCTCAGCACAA
GGTTCAAGGATTCTCGCTTGGAAATGAAACTCGACTGACGCGGAGGAGGC
CTCGCTCGTGTCACGCCGTTGGGGACGGACATGATCGTGTAGCACACGGC
GGTAGTGTTGTCGGAAACCAAGGAGAAGCGGCGGCGAGCACACCGGCGTC
GATGCAAGGACAGAATGCGGAAACGGGTAACCAACAACATAAACAACCTC
GAAGGCTCCGCGTCAGAAAGATGTCAAAGAAGTGGGCCACCCGGTCCGCA
AGAAACGAATCGTTTATCAGCGGGGCGAAGAAGTTGGGTTCGGGGGGTCA
GTGGCGCGAAGTTTTGAGACAACTCGACCAACTAACCGAGGACGGCATCC
CCTGACCTCGAAGGCTCCGCGTCAGAAAGATGTCAAAGAAGTGGGCCACC
CGGTCCGCAAGAAACGAATCGTTTATCAGCGGGGCGAAGAAGTTGGGTTC
GGGGGGTCAGTGGCGCGAAGTTTTGAGACAACTCGACCAACTAACCGAGG
ACGGCATCCCCTGA
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