mRNA_P-fluviatile_contig11.1304.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1304.1
Unique NamemRNA_P-fluviatile_contig11.1304.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3514585..3515587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-24_000740.1
Exons2
Model size220
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815427.4548578-CDS-P-fluviatile_contig11:3514584..35147661622815427.4548578-CDS-P-fluviatile_contig11:3514584..3514766Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3514585..3514766 +
1693561813.6828294-CDS-P-fluviatile_contig11:3514584..35147661693561813.6828294-CDS-P-fluviatile_contig11:3514584..3514766Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3514585..3514766 +
1622815427.4711976-CDS-P-fluviatile_contig11:3515549..35155861622815427.4711976-CDS-P-fluviatile_contig11:3515549..3515586Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3515550..3515586 +
1693561813.6982825-CDS-P-fluviatile_contig11:3515549..35155861693561813.6982825-CDS-P-fluviatile_contig11:3515549..3515586Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3515550..3515586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1304.1prot_P-fluviatile_contig11.1304.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3514585..3515586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1304.1

>prot_P-fluviatile_contig11.1304.1 ID=prot_P-fluviatile_contig11.1304.1|Name=mRNA_P-fluviatile_contig11.1304.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=73bp
ISKPAAVLICGLPFLSSPVPQHLATQQRSEPRHAAAQRSRDFAEECDRQQ
GTTTDHRGRQSRNKAGDTKNGAR
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mRNA from alignment at P-fluviatile_contig11:3514585..3515587+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1304.1 ID=mRNA_P-fluviatile_contig11.1304.1|Name=mRNA_P-fluviatile_contig11.1304.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1003bp|location=Sequence derived from alignment at P-fluviatile_contig11:3514585..3515587+ (Porterinema fluviatile SAG_2381)
ATCAGTAAACCCGCCGCAGTTCTTATCTGCGGGCTCCCCTTTCTCTCCTC
TCCTGTGCCACAACACCTCGCCACGCAGCAACGCAGCGAACCTCGCCACG
CAGCAGCGCAGCGAAGCAGAGACTTCGCGGAGGAGTGCGACAGGCAGCAG
GGTACTACGACTGATCATCGTGGGAGACAAAGGTGTGTGTTTGTGTCGCT
TATGATGTATGCGCGTCTGCATGGGGACACGCTGCTCTCTCAACCGCGAG
GTACGCTCCGGCGCATTTGAGATGACGACGAGACACCCTTTTACCGCCCC
AAACCGACGGGAATGTGCTCCTATGACGTGTTAGATGACTTTCTGCCCCT
CACTTTTTATTTTTGAGACCCGTGCGTACGATGGTTGAATGTATCTACGC
TAGATATCACCCCCCCATGTTTTTGCAGCGCCGCCGCGGGACTGTGCGCA
CACCCCCCACCTCTCCGAACATTTTTTTAGGGGGGGGGGGTACTCCCACC
CTCCCACATTCTAAAAATGTGTCCACAGCAGTCGGAGCTTCCATATTACT
TGATTTGAAAGCCTGGCCTGTGGCGTGAGCACGTTTTCTTCGATATCTCG
GCGCTGATGTGTCGGATCGCGCTCATTCTTTTCGCACAAGATGCAGGCCA
GCCACACCATGGACGCTGCGTCAACTATGTACGTGAAGATCCTGAATTTT
AAAGCTCGATTCAGTGTTCCGGGCGAAAAGTGTAGACGTTTGGGTGTACC
AACCTCGCCACTTTGTTCGCTGGCCCTGAAATTTTGCACAGCGGTGTGTC
TGACCGACTCCCACCCATATCTGTAAAACAAAGAGCAAAATCGAAGCAAT
CAAGACAGTATTGTTGCATCGACGGGCCCCCTCGGCCACCACCTTGCCTC
CACCCTTCATCACCACGACGACCGCCACCACTCTGCCCCCGTCTGTCCAT
CGCATTTTGTTCGAGTAGAAACAAAGCAGGTGACACCAAGAACGGCGCCC
GTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:3514585..3515587+

>mRNA_P-fluviatile_contig11.1304.1 ID=mRNA_P-fluviatile_contig11.1304.1|Name=mRNA_P-fluviatile_contig11.1304.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=438bp|location=Sequence derived from alignment at P-fluviatile_contig11:3514585..3515587+ (Porterinema fluviatile SAG_2381)
ATCAGTAAACCCGCCGCAGTTCTTATCTGCGGGCTCCCCTTTCTCTCCTC
TCCTGTGCCACAACACCTCGCCACGCAGCAACGCAGCGAACCTCGCCACG
CAGCAGCGCAGCGAAGCAGAGACTTCGCGGAGGAGTGCGACAGGCAGCAG
GGTACTACGACTGATCATCGTGGGAGACAAAGATCAGTAAACCCGCCGCA
GTTCTTATCTGCGGGCTCCCCTTTCTCTCCTCTCCTGTGCCACAACACCT
CGCCACGCAGCAACGCAGCGAACCTCGCCACGCAGCAGCGCAGCGAAGCA
GAGACTTCGCGGAGGAGTGCGACAGGCAGCAGGGTACTACGACTGATCAT
CGTGGGAGACAAAGTAGAAACAAAGCAGGTGACACCAAGAACGGCGCCCG
TTAGAAACAAAGCAGGTGACACCAAGAACGGCGCCCGT
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