mRNA_P-fluviatile_contig11.1303.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1303.1
Unique NamemRNA_P-fluviatile_contig11.1303.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.1303.1 vs. uniprot
Match: A0A372QA98_9GLOM (Uncharacterized protein (Fragment) n=1 Tax=Rhizophagus sp. MUCL 43196 TaxID=1803374 RepID=A0A372QA98_9GLOM)

HSP 1 Score: 65.9 bits (159), Expect = 8.130e-8
Identity = 67/273 (24.54%), Postives = 120/273 (43.96%), Query Frame = 1 
Query:    4 KMSKSEEFCMAPWAEDEVMECRRLVFPEISENDVQQRFDIVGGVARVVFGEVDLWRYTQAM-IDKANR--ESVKSL---PLLVANAGSDFSNQDWGDKLLHLKPWPPSCSVSKVKNV-TFASDFAAEVVGRALDAQGTRILPAIMASGFRSENTKSLVTGSV-RGQLFEYLAHKEIAGSTGGGGTDGRTFGMKIFGNSSTLTKSTFQFSEREVFKGTRIPGM-LRPGVYYKPKNPSFPAIDGLGIDEGGDTLLFFQMKVADAEGVNGTYVETY 795
            K  +SE F M PW  DE+ EC+ +++ +I+++ ++++F++ GGVAR        W +  AM +DK     E V SL     L+   G  FS   +  KL+H+K    +      K + TFAS+F        +       L   +      EN++ +   +V R ++FE  +H +I          G  F +++      + +    F +        I  + +  G+YY+P + ++     + ID        FQ+ +AD  GV    ++ Y
Sbjct:  128 KAPRSETFYMPPWEIDELNECQSIIYTQIAQDSIKEKFNLCGGVAR--------WIFDIAMTLDKIKLGIEGVLSLIDLKSLLRAQGEHFSGDRFSHKLIHIKTNENTTENPYTKAICTFASNFVENKCLGKIHKDHIDDLCTFI------ENSRDISEIAVLREKVFEMWSHSKIC--------KGGEFLVRLLEKGQQVDEEYVIFEDLVKENFDNINDIDINKGIYYQPISKNY-----MSIDSYIHPNKLFQITIADKHGVKQEKLKEY 373
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A372QA98_9GLOM8.130e-824.54Uncharacterized protein (Fragment) n=1 Tax=Rhizoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3504719..3506399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1681
Cds size981
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1303.1prot_P-fluviatile_contig11.1303.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3504725..3505705 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815481.785693-UTR-P-fluviatile_contig11:3504718..35047241622815481.785693-UTR-P-fluviatile_contig11:3504718..3504724Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3504719..3504724 +
1693562027.1429572-UTR-P-fluviatile_contig11:3504718..35047241693562027.1429572-UTR-P-fluviatile_contig11:3504718..3504724Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3504719..3504724 +
1622815481.820728-UTR-P-fluviatile_contig11:3505705..35063991622815481.820728-UTR-P-fluviatile_contig11:3505705..3506399Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3505706..3506399 +
1693562027.1601293-UTR-P-fluviatile_contig11:3505705..35063991693562027.1601293-UTR-P-fluviatile_contig11:3505705..3506399Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3505706..3506399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815481.8041916-CDS-P-fluviatile_contig11:3504724..35057051622815481.8041916-CDS-P-fluviatile_contig11:3504724..3505705Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3504725..3505705 +
1693562027.150864-CDS-P-fluviatile_contig11:3504724..35057051693562027.150864-CDS-P-fluviatile_contig11:3504724..3505705Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3504725..3505705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1303.1

>prot_P-fluviatile_contig11.1303.1 ID=prot_P-fluviatile_contig11.1303.1|Name=mRNA_P-fluviatile_contig11.1303.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=327bp
MSKSEEFCMAPWAEDEVMECRRLVFPEISENDVQQRFDIVGGVARVVFGE
VDLWRYTQAMIDKANRESVKSLPLLVANAGSDFSNQDWGDKLLHLKPWPP
SCSVSKVKNVTFASDFAAEVVGRALDAQGTRILPAIMASGFRSENTKSLV
TGSVRGQLFEYLAHKEIAGSTGGGGTDGRTFGMKIFGNSSTLTKSTFQFS
EREVFKGTRIPGMLRPGVYYKPKNPSFPAIDGLGIDEGGDTLLFFQMKVA
DAEGVNGTYVETYWKTALQSKGASPKNFVFLYVVPSGSLSVWEKATKQRK
ALGVLEGLSEKSKSACKVGVMETNDV*
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mRNA from alignment at P-fluviatile_contig11:3504719..3506399+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1303.1 ID=mRNA_P-fluviatile_contig11.1303.1|Name=mRNA_P-fluviatile_contig11.1303.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1681bp|location=Sequence derived from alignment at P-fluviatile_contig11:3504719..3506399+ (Porterinema fluviatile SAG_2381)
TTGAAGATGAGTAAGTCTGAGGAGTTTTGCATGGCACCGTGGGCTGAGGA
CGAAGTGATGGAATGTCGGCGGTTGGTTTTCCCTGAGATATCAGAAAACG
ACGTGCAACAACGTTTTGATATTGTTGGAGGTGTGGCACGAGTAGTCTTT
GGTGAGGTAGACTTGTGGAGATACACGCAAGCCATGATTGACAAGGCGAA
CAGAGAAAGTGTGAAGTCGCTGCCACTACTTGTTGCGAATGCAGGCAGCG
ACTTTTCGAACCAGGATTGGGGTGATAAACTCTTACATCTCAAACCTTGG
CCCCCTAGTTGCTCAGTGTCCAAGGTTAAAAATGTCACATTTGCCAGCGA
CTTCGCGGCTGAAGTGGTTGGTCGTGCCTTAGACGCTCAAGGAACAAGAA
TCCTTCCAGCCATAATGGCGTCGGGTTTCCGAAGCGAAAACACGAAGAGT
TTGGTTACGGGGTCCGTTCGGGGGCAACTCTTTGAGTATTTAGCACACAA
AGAAATTGCAGGCAGTACGGGTGGGGGCGGGACTGATGGACGAACGTTTG
GCATGAAAATCTTTGGCAACAGCAGTACTCTGACAAAGTCGACTTTCCAA
TTTTCTGAGAGGGAGGTGTTTAAGGGCACACGCATCCCTGGTATGCTCCG
CCCTGGGGTCTACTACAAACCCAAAAATCCAAGCTTCCCCGCCATTGATG
GGCTCGGAATAGACGAAGGTGGTGATACTCTCTTGTTTTTTCAGATGAAG
GTTGCGGACGCCGAAGGGGTCAACGGAACATACGTGGAGACGTACTGGAA
AACTGCTCTTCAGTCAAAGGGGGCATCACCCAAGAATTTTGTTTTTTTGT
ACGTGGTTCCGTCGGGTAGTCTTTCCGTATGGGAGAAGGCAACCAAGCAA
AGGAAGGCACTCGGTGTGCTGGAGGGGTTGTCTGAAAAATCAAAGTCAGC
GTGTAAGGTAGGCGTGATGGAGACAAATGATGTTTAATGCTTGTCTCGGG
GTGTTGCAGTCTTACTGTTGCTACGAAACAGTGCTGGGATGTTCAGAGCA
CATGAATGATGGGGATGGGCCTGCTTGTCAAAACGCACCATGCGGATCCG
CAAGGTAGTGAGCACCATGCAGGTATTAACGATTCAGTCAACAAGGAACT
CGTCTGTCCGTACTGTAATGACCCAACACGTGTTTTTTTTATTGCTCGGG
AGGCAGGTAGGTCACAGCTACTCCAGCGTTGCGCTAGCGTTGGCAGCAGC
GGCGCCGACGAAGATGACGGTAGCGGAATGGGCAGCTGTTATATAGGCGA
GAAAGTGATGCTTGTCTCGTCGTGGTGGTTGCAGAAGGCGACTCACGTGC
TGATCGCGACATCGATCGCTCTGTTTTTCTTGAGAATGTAAAGCCTAGGA
GGATGGTGGCAGACCGGGGGCTGGCCAAGCTCGGTAGCGCGAAGGGTGTC
TAGTAATGGTGGTCGGTTGGAATTCCATTGTCTGTCGAAGGCTAGACAAA
ATCACCGGTGGCCACTTGACCCCACCCTGAAGGCACCCTGCCAAGGTTCA
CCACCCTGTGAAGGCCCTGTCAGACCCTGTGCAGGGTCTCACGCGGCAGG
GAAGCTTTTTGGCACAACCCTGACCGGGCCACGTACCCTGAGAGTGTCCT
GCGCAGGGTCTCATTCGCGAGAAGGTGCTCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:3504719..3506399+

>mRNA_P-fluviatile_contig11.1303.1 ID=mRNA_P-fluviatile_contig11.1303.1|Name=mRNA_P-fluviatile_contig11.1303.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1962bp|location=Sequence derived from alignment at P-fluviatile_contig11:3504719..3506399+ (Porterinema fluviatile SAG_2381)
ATGAGTAAGTCTGAGGAGTTTTGCATGGCACCGTGGGCTGAGGACGAAGT
GATGGAATGTCGGCGGTTGGTTTTCCCTGAGATATCAGAAAACGACGTGC
AACAACGTTTTGATATTGTTGGAGGTGTGGCACGAGTAGTCTTTGGTGAG
GTAGACTTGTGGAGATACACGCAAGCCATGATTGACAAGGCGAACAGAGA
AAGTGTGAAGTCGCTGCCACTACTTGTTGCGAATGCAGGCAGCGACTTTT
CGAACCAGGATTGGGGTGATAAACTCTTACATCTCAAACCTTGGCCCCCT
AGTTGCTCAGTGTCCAAGGTTAAAAATGTCACATTTGCCAGCGACTTCGC
GGCTGAAGTGGTTGGTCGTGCCTTAGACGCTCAAGGAACAAGAATCCTTC
CAGCCATAATGGCGTCGGGTTTCCGAAGCGAAAACACGAAGAGTTTGGTT
ACGGGGTCCGTTCGGGGGCAACTCTTTGAGTATTTAGCACACAAAGAAAT
TGCAGGCAGTACGGGTGGGGGCGGGACTGATGGACGAACGTTTGGCATGA
AAATCTTTGGCAACAGCAGTACTCTGACAAAGTCGACTTTCCAATTTTCT
GAGAGGGAGGTGTTTAAGGGCACACGCATCCCTGGTATGCTCCGCCCTGG
GGTCTACTACAAACCCAAAAATCCAAGCTTCCCCGCCATTGATGGGCTCG
GAATAGACGAAGGTGGTGATACTCTCTTGTTTTTTCAGATGAAGGTTGCG
GACGCCGAAGGGGTCAACGGAACATACGTGGAGACGTACTGGAAAACTGC
TCTTCAGTCAAAGGGGGCATCACCCAAGAATTTTGTTTTTTTGTACGTGG
TTCCGTCGGGTAGTCTTTCCGTATGGGAGAAGGCAACCAAGCAAAGGAAG
GCACTCGGTGTGCTGGAGGGGTTGTCTGAAAAATCAAAGTCAGCGTGTAA
GGTAGGCGTGATGGAGACAAATGATGTTTAAATGAGTAAGTCTGAGGAGT
TTTGCATGGCACCGTGGGCTGAGGACGAAGTGATGGAATGTCGGCGGTTG
GTTTTCCCTGAGATATCAGAAAACGACGTGCAACAACGTTTTGATATTGT
TGGAGGTGTGGCACGAGTAGTCTTTGGTGAGGTAGACTTGTGGAGATACA
CGCAAGCCATGATTGACAAGGCGAACAGAGAAAGTGTGAAGTCGCTGCCA
CTACTTGTTGCGAATGCAGGCAGCGACTTTTCGAACCAGGATTGGGGTGA
TAAACTCTTACATCTCAAACCTTGGCCCCCTAGTTGCTCAGTGTCCAAGG
TTAAAAATGTCACATTTGCCAGCGACTTCGCGGCTGAAGTGGTTGGTCGT
GCCTTAGACGCTCAAGGAACAAGAATCCTTCCAGCCATAATGGCGTCGGG
TTTCCGAAGCGAAAACACGAAGAGTTTGGTTACGGGGTCCGTTCGGGGGC
AACTCTTTGAGTATTTAGCACACAAAGAAATTGCAGGCAGTACGGGTGGG
GGCGGGACTGATGGACGAACGTTTGGCATGAAAATCTTTGGCAACAGCAG
TACTCTGACAAAGTCGACTTTCCAATTTTCTGAGAGGGAGGTGTTTAAGG
GCACACGCATCCCTGGTATGCTCCGCCCTGGGGTCTACTACAAACCCAAA
AATCCAAGCTTCCCCGCCATTGATGGGCTCGGAATAGACGAAGGTGGTGA
TACTCTCTTGTTTTTTCAGATGAAGGTTGCGGACGCCGAAGGGGTCAACG
GAACATACGTGGAGACGTACTGGAAAACTGCTCTTCAGTCAAAGGGGGCA
TCACCCAAGAATTTTGTTTTTTTGTACGTGGTTCCGTCGGGTAGTCTTTC
CGTATGGGAGAAGGCAACCAAGCAAAGGAAGGCACTCGGTGTGCTGGAGG
GGTTGTCTGAAAAATCAAAGTCAGCGTGTAAGGTAGGCGTGATGGAGACA
AATGATGTTTAA
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