mRNA_P-fluviatile_contig11.1302.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1302.1
Unique NamemRNA_P-fluviatile_contig11.1302.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig11.1302.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 6.550e-11
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 TQVVAKKIDDIEAAIAGGSGYLGITDPETLLKQLGRKDRE 120
            T  V KKIDDIEAAIAGGS YLG+TDPE LLKQLGRK+ +
Sbjct:   55 TAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQ 94
[Close]
BLAST of mRNA_P-fluviatile_contig11.1302.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 4.900e-10
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 TQVVAKKIDDIEAAIAGGSGYLGITDPETLLKQLGRKDRE 120
            T  V KKID IEAAIAGGS YLG+TDPE LLKQLGRK+ +
Sbjct:   62 TAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQ 101
[Close]
BLAST of mRNA_P-fluviatile_contig11.1302.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 2.470e-8
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 TQVVAKKIDDIEAAIAGGSGYLGITDPETLLKQL 102
            T  V KKIDDIEAAIAGG+ YLG+TDPE LLKQL
Sbjct:   62 TAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQL 95
[Close]
BLAST of mRNA_P-fluviatile_contig11.1302.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 4.200e-7
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:   25 DDIEAAIAGGSGYLGITDPETLLKQLGRKDRE 120
            D IEAAIAGGS YLG+TDPE LLKQLGRK+ +
Sbjct:  138 DGIEAAIAGGSRYLGMTDPEALLKQLGRKEEQ 169
[Close]
BLAST of mRNA_P-fluviatile_contig11.1302.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 2.720e-5
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:   19 KIDDIEAA-IAGGSGYLGITDPETLLKQ 99
            KIDD+EAA IAGGSGYLG+TDPE LLK+
Sbjct:   68 KIDDVEAATIAGGSGYLGMTDPEALLKE 95
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8Q1_ECTSI6.550e-1177.50Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI4.900e-1075.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPP1_ECTSI2.470e-879.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FM56_ECTSI4.200e-778.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI2.720e-582.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3499179..3499396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size196
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815481.7358224-CDS-P-fluviatile_contig11:3499178..34993031622815481.7358224-CDS-P-fluviatile_contig11:3499178..3499303Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3499179..3499303 +
1693562027.1245844-CDS-P-fluviatile_contig11:3499178..34993031693562027.1245844-CDS-P-fluviatile_contig11:3499178..3499303Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3499179..3499303 +
1622815481.7488525-CDS-P-fluviatile_contig11:3499325..34993951622815481.7488525-CDS-P-fluviatile_contig11:3499325..3499395Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3499326..3499395 +
1693562027.1351087-CDS-P-fluviatile_contig11:3499325..34993951693562027.1351087-CDS-P-fluviatile_contig11:3499325..3499395Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3499326..3499395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1302.1prot_P-fluviatile_contig11.1302.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3499179..3499395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1302.1

>prot_P-fluviatile_contig11.1302.1 ID=prot_P-fluviatile_contig11.1302.1|Name=mRNA_P-fluviatile_contig11.1302.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=65bp
TQVVAKKIDDIEAAIAGGSGYLGITDPETLLKQLGRKDREKDNYAGRRSS
SSSSFRRRRTGSPGL
back to top

mRNA from alignment at P-fluviatile_contig11:3499179..3499396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1302.1 ID=mRNA_P-fluviatile_contig11.1302.1|Name=mRNA_P-fluviatile_contig11.1302.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=218bp|location=Sequence derived from alignment at P-fluviatile_contig11:3499179..3499396+ (Porterinema fluviatile SAG_2381)
ACGCAAGTGGTAGCCAAGAAGATTGATGATATTGAGGCTGCTATTGCTGG
GGGCTCCGGGTACCTGGGAATTACCGACCCCGAAACCCTGTTGAAGCAAC
TAGGCAGGAAGGACAGGGAGAAGGAGCAACTACGCAGGGAGAAGGAGCAA
CTACGCAGGAAGGAGGAGCAGCTCCTCGAGCTCCTTTCGAAGGAGAAGGA
CCGGCTCTCCAGGATTGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig11:3499179..3499396+

>mRNA_P-fluviatile_contig11.1302.1 ID=mRNA_P-fluviatile_contig11.1302.1|Name=mRNA_P-fluviatile_contig11.1302.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=390bp|location=Sequence derived from alignment at P-fluviatile_contig11:3499179..3499396+ (Porterinema fluviatile SAG_2381)
ACGCAAGTGGTAGCCAAGAAGATTGATGATATTGAGGCTGCTATTGCTGG
GGGCTCCGGGTACCTGGGAATTACCGACCCCGAAACCCTGTTGAAGCAAC
TAGGCAGGAAGGACAGGGAGAAGGAACGCAAGTGGTAGCCAAGAAGATTG
ATGATATTGAGGCTGCTATTGCTGGGGGCTCCGGGTACCTGGGAATTACC
GACCCCGAAACCCTGTTGAAGCAACTAGGCAGGAAGGACAGGGAGAAGGA
CAACTACGCAGGAAGGAGGAGCAGCTCCTCGAGCTCCTTTCGAAGGAGAA
GGACCGGCTCTCCAGGATTGCAACTACGCAGGAAGGAGGAGCAGCTCCTC
GAGCTCCTTTCGAAGGAGAAGGACCGGCTCTCCAGGATTG
back to top