mRNA_P-fluviatile_contig11.1301.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1301.1
Unique NamemRNA_P-fluviatile_contig11.1301.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig11.1301.1 vs. uniprot
Match: D8LH67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH67_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 1.120e-37
Identity = 134/193 (69.43%), Postives = 137/193 (70.98%), Query Frame = 1 
Query:  121 QRERPRWKPLRREAHHLEADIETSARAEAVLPPDMEEAPEAHLMEETPGTQLMETTRQRVQRGRRTEMPASSXXXXXXXXXXXXXXXXXXXXXXXXLTPARRXXXXXXXXXXXXXXXXXXXXXXXXXXKTTRPRVQKGMRTETXXXXXXXXXXXXXXTTEMQLMKKARRIPSRQRGGQPTRRKVEHRRPRSQG 699
            +RER RWKPLRREAHHLEADIETSARAEA+LP DMEEAPEAHLME TPGTQL+E TRQRVQRGRRTE     XXXXXXXXXXXXXXXXXXXXXXXXLTPA  XXXXXXXXXXXXXXXX                                             MKKARRIPSRQRGGQPTRRKVEHRRPRSQG
Sbjct:   33 ERERARWKPLRREAHHLEADIETSARAEAMLPSDMEEAPEAHLMEGTPGTQLVEATRQRVQRGRRTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTPAXXXXXXXXXXXXXXXXXX---------------------------------------------MKKARRIPSRQRGGQPTRRKVEHRRPRSQG 180
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH67_ECTSI1.120e-3769.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3492610..3495762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size768
Cds size768
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815481.6074743-CDS-P-fluviatile_contig11:3492609..34927081622815481.6074743-CDS-P-fluviatile_contig11:3492609..3492708Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3492610..3492708 -
1693562024.912749-CDS-P-fluviatile_contig11:3492609..34927081693562024.912749-CDS-P-fluviatile_contig11:3492609..3492708Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3492610..3492708 -
1622815481.6215093-CDS-P-fluviatile_contig11:3492835..34929581622815481.6215093-CDS-P-fluviatile_contig11:3492835..3492958Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3492836..3492958 -
1693562025.1753767-CDS-P-fluviatile_contig11:3492835..34929581693562025.1753767-CDS-P-fluviatile_contig11:3492835..3492958Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3492836..3492958 -
1622815481.634808-CDS-P-fluviatile_contig11:3493107..34932421622815481.634808-CDS-P-fluviatile_contig11:3493107..3493242Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3493108..3493242 -
1693562025.1845605-CDS-P-fluviatile_contig11:3493107..34932421693562025.1845605-CDS-P-fluviatile_contig11:3493107..3493242Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3493108..3493242 -
1622815481.6493561-CDS-P-fluviatile_contig11:3493418..34935081622815481.6493561-CDS-P-fluviatile_contig11:3493418..3493508Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3493419..3493508 -
1693562025.1933131-CDS-P-fluviatile_contig11:3493418..34935081693562025.1933131-CDS-P-fluviatile_contig11:3493418..3493508Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3493419..3493508 -
1622815481.664906-CDS-P-fluviatile_contig11:3493662..34937971622815481.664906-CDS-P-fluviatile_contig11:3493662..3493797Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3493663..3493797 -
1693562025.2020302-CDS-P-fluviatile_contig11:3493662..34937971693562025.2020302-CDS-P-fluviatile_contig11:3493662..3493797Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3493663..3493797 -
1622815481.68005-CDS-P-fluviatile_contig11:3494795..34948981622815481.68005-CDS-P-fluviatile_contig11:3494795..3494898Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3494796..3494898 -
1693562025.2110276-CDS-P-fluviatile_contig11:3494795..34948981693562025.2110276-CDS-P-fluviatile_contig11:3494795..3494898Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3494796..3494898 -
1622815481.6948256-CDS-P-fluviatile_contig11:3495679..34957621622815481.6948256-CDS-P-fluviatile_contig11:3495679..3495762Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3495680..3495762 -
1693562026.9055064-CDS-P-fluviatile_contig11:3495679..34957621693562026.9055064-CDS-P-fluviatile_contig11:3495679..3495762Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3495680..3495762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1301.1prot_P-fluviatile_contig11.1301.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3492610..3495762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1301.1

>prot_P-fluviatile_contig11.1301.1 ID=prot_P-fluviatile_contig11.1301.1|Name=mRNA_P-fluviatile_contig11.1301.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=256bp
DSDHEDTGAAAAPHRLTVNCLLTSASWSPCLAWSTSVLTEQRERPRWKPL
RREAHHLEADIETSARAEAVLPPDMEEAPEAHLMEETPGTQLMETTRQRV
QRGRRTEMPASSAAVVPPEMAEAPEAHLMDENPGTQLTPARRAAVVPPEM
AEAPGAHRMEENPGTQLVKTTRPRVQKGMRTETPARRAAVVHPEMAETTE
MQLMKKARRIPSRQRGGQPTRRKVEHRRPRSQGGVMLQFVTVIFLPLRGP
VRIHT*
back to top

mRNA from alignment at P-fluviatile_contig11:3492610..3495762-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1301.1 ID=mRNA_P-fluviatile_contig11.1301.1|Name=mRNA_P-fluviatile_contig11.1301.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3153bp|location=Sequence derived from alignment at P-fluviatile_contig11:3492610..3495762- (Porterinema fluviatile SAG_2381)
GACAGTGATCATGAGGACACGGGGGCGGCCGCCGCGCCCCACCGGCTTAC
GGTGAACTGTCTTCTCACTTCGGCGTCCTGGAGGTGGCCGCGCGGGAGAG
TGGAAACGGGGACGCTGCGTTCCACCTATCGAAAGCGAAGATGGCGATGA
TCGCGGCGCATGCCGCTAAGGGCGTGCGCCAGACAGACATGAGAGAGTTT
GTTGATGAGTGAGGGGGACAGCTATACCGCAGTTTTTTTTTTTTTGTTTT
GTTTTATTTTTGTCCGCTTCGTTGCTGGCGCGTTCATTGGTTTTGTTGGC
GTGTCTCATCACGCAACATCGTAGGGAGGCAGCGAGGAACGTGATATTTT
TTCAAGTATACTAAGTTGCACGGACGGGAGCTGTACACGGGGTTTGGCTC
GAAGGTGAATTCTGCGCGTGCATGCGGGAATGGTTTCGCGGCAAACTCAG
CTATCAGAGTGGAACCCACATTTGTCTCAGAAAAGGCTGCCCCTGCCGCC
CACAAAGTATATTCACCACACTCGATCCACATGCTACTCTGTTGGCCTCG
CAAATGGTAAGCGATACACCATGAACTCAAACAGCAGTGCCTCAGTAGTG
CCAGACCGGCACTACTGAGGTATATCGATCACCGAATAGTGCCGTTTGGC
ACTATTGAGGCACTATTCCCAGTTGTGCCGGTGCCCGCTATAGTGCCGGT
GAACGCCCTGCGCACGTACCGGCACTATAGAGGGCCCCCCACTGTATTGA
ATCATGTATTACATAACCCTCGATGGGGGATCGTGGAAGCCCAGTGAATG
AAGCGGCATACCCTTCTACCAGCTTAATTTTTTTCACCGTTGGTATGCCC
CCCCCTGCCTTCAGCCCCTGCCTTGCCTGGAGCACGAGCGTCCTGACGGA
ACAGAGAGAGAGACCACGATGGAAACCCCTCCGGCGAGAAGCACACCACC
TTGAAGCTGATATAGAGGTAAGTCCTGCTACTCAATACAAAACGAAATAA
AATACGGAGTACTCAGGAGTAGGTCGTTTGGGACACAAGATTCGGGCAAT
TCTGTCACAGAGTGCCCTGCCTGCCTCCGCTCCAGAGGACGCTCACACAT
GGGGTCCTTTCGGCGAGAATCATAGAACACATTGTATTACTAGATTGGTT
CAAGTTTCACTACATAACAGGCAACAGCCTGGCTTCTTTGCACAATATCT
CGAGCAACAGCCGAGGCTGTAAATCCTTGGCAATTGGACCGAGAAAAGGT
GGTGCATTTTTCGCCAACTCTCCGTCATTACAGATACGGTTGTGTGGGTA
GCTGCGCGTTGATTTTGCCAAGAGGAAACATGACAAAACGAATAGAGTCG
CCGTGATGTACCGTCTCCTCACCTACATATGACAGCAGGCTTGCAACTTC
ATCAAGTACCTCCCCTCGTTCTTCGTCGCCTCTACAAGCAGCAGTACAAT
GGGTGTCGAGATTGGTCGAGAGGTTGAATTTACTGATTTGACTATTGACT
GCTACAAAGAGCAATCGACACATGCAGATCATGGCCCTTGAACATTCAAG
CGGTGCAAGAGCTCGCACCCGCACGACAGCAGCATACTATGTCCCAAAGT
ATCATATAACACCTCTGTGCGGGAGACACTGTTTGAAGTGGGAGTGCAGC
ATTTCCGACCCCCGCTGTACAGGAGCAGCAGGAACTTGACGAGGAGAGCA
ATGTGTGGTATGCGCCTGCGGAGATCAGACCTGTCCACAATTTGTCCATC
AAAATTCTGCGTGCAGGCAGCACAAGTATTGCATTCGATCACTTGATGCT
GCATCGGTCGACTTGCATCCCGTGGAAATATGAGACTACCCCCGCCTACG
ATATGTGATCCCCCATGTGTGGCCAAATCGTGTCGTTGGGAGGTGGCTGT
GTGCAGCGACCACCACGTCTAAAATGCTGGTTTGTTGTTCAATCATGGTG
CTGTTTGATCTACAGACGTCGGCAAGAGCGGAAGCGGTGCTTCCCCCGGA
TATGGAGGAGGCACCGGAGGCGCATCTCATGGAGGAAACCCCGGGAACGC
AGCTGATGGAGACGACCCGGCAAAGAGTTCAAAGAGGCAGGAGAACCGAG
GTATGGATTGCCCGTGGAGTGAGCGTGTAAGCATGTGTGTACGTGTGTCC
CGAATTGTGTGTCTTATATTTGCTCGTGCCGCGCGTGTGTACAGCAACGC
CATGGTCCGTCTGAAATTGGTGTATTGTTTGTGCACGATGCTGTTGATCG
ACAGATGCCAGCAAGCAGTGCAGCGGTAGTTCCCCCGGAGATGGCGGAGG
CACCGGAGGCGCATCTCATGGACGAAAACCCGGGAACGCAGCTGGTGAAG
ACGACCCTGCCAAGAGTTCAAAGGATTGCCCGGTGTGAACGTATGAGCAT
GTGTGTGCTGCGTGTCCGAATTGTGCGTCATATGTGTGCTCGTGCCGCCC
GTGTGCACAGCGACGCCATGGTCCGTCTAAAATTTGTGTATTGTTTGCGC
ACGATGCTGTTGATCGACAGACGCCAGCAAGGAGGGCAGCGGTAGTTCCC
CCGGAGATGGCGGAGGCACCGGGGGCGCATCGCATGGAGGAAAACCCGGG
AACGCAGCTGGTGAAGACGACTCGGCCAAGAGTTCAAAAGGGCATGAGAA
CGGAGGTATGGATTGCCCGGTGTGAGCGTGTGAGCATGTGTGTACGTGTC
CGGCATTGTGTGTCTATGTTTGCTCGTACCGCGTATGTGTACAGCGACGC
CGAGGCCCGTCTTATGTGTTTGTGTTGCGTGTTCACGATGCTGCTGATGG
ACAGACGCCAGCAAGGAGGGCAGCGGTAGTACACCCGGAGATGGCGGAGA
CAACCGAAATGCAGCTGATGAAGAAAGCTCGCCGAATACCATCCCGCCAA
AGAGGGGGGCAGCCGACGCGGAGGAAGGTACGCACGCCCAACTGGATTTG
AACCTGGGATCCGGCCTCTACATTCTCGTTACCTGTTTCTACCCCATCAC
ACCCACGTATGCTCCAGTCTCATTTCTTGTTGTGCTTTTCCCTCGTGAAC
GCAGGTCGAGCACCGCCGTCCAAGAAGTCAAGGAGGGGTGATGCTACAAT
TCGTGACAGTGATCTTTCTGCCGCTGAGGGGGCCGGTGAGAATCCATACA
TAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig11:3492610..3495762-

>mRNA_P-fluviatile_contig11.1301.1 ID=mRNA_P-fluviatile_contig11.1301.1|Name=mRNA_P-fluviatile_contig11.1301.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1536bp|location=Sequence derived from alignment at P-fluviatile_contig11:3492610..3495762- (Porterinema fluviatile SAG_2381)
GACAGTGATCATGAGGACACGGGGGCGGCCGCCGCGCCCCACCGGCTTAC
GGTGAACTGTCTTCTCACTTCGGCGTCCTGGAGGACAGTGATCATGAGGA
CACGGGGGCGGCCGCCGCGCCCCACCGGCTTACGGTGAACTGTCTTCTCA
CTTCGGCGTCCTGGAGCCCCTGCCTTGCCTGGAGCACGAGCGTCCTGACG
GAACAGAGAGAGAGACCACGATGGAAACCCCTCCGGCGAGAAGCACACCA
CCTTGAAGCTGATATAGAGCCCCTGCCTTGCCTGGAGCACGAGCGTCCTG
ACGGAACAGAGAGAGAGACCACGATGGAAACCCCTCCGGCGAGAAGCACA
CCACCTTGAAGCTGATATAGAGACGTCGGCAAGAGCGGAAGCGGTGCTTC
CCCCGGATATGGAGGAGGCACCGGAGGCGCATCTCATGGAGGAAACCCCG
GGAACGCAGCTGATGGAGACGACCCGGCAAAGAGTTCAAAGAGGCAGGAG
AACCGAGACGTCGGCAAGAGCGGAAGCGGTGCTTCCCCCGGATATGGAGG
AGGCACCGGAGGCGCATCTCATGGAGGAAACCCCGGGAACGCAGCTGATG
GAGACGACCCGGCAAAGAGTTCAAAGAGGCAGGAGAACCGAGATGCCAGC
AAGCAGTGCAGCGGTAGTTCCCCCGGAGATGGCGGAGGCACCGGAGGCGC
ATCTCATGGACGAAAACCCGGGAACGCAGCTGATGCCAGCAAGCAGTGCA
GCGGTAGTTCCCCCGGAGATGGCGGAGGCACCGGAGGCGCATCTCATGGA
CGAAAACCCGGGAACGCAGCTGACGCCAGCAAGGAGGGCAGCGGTAGTTC
CCCCGGAGATGGCGGAGGCACCGGGGGCGCATCGCATGGAGGAAAACCCG
GGAACGCAGCTGGTGAAGACGACTCGGCCAAGAGTTCAAAAGGGCATGAG
AACGGAGACGCCAGCAAGGAGGGCAGCGGTAGTTCCCCCGGAGATGGCGG
AGGCACCGGGGGCGCATCGCATGGAGGAAAACCCGGGAACGCAGCTGGTG
AAGACGACTCGGCCAAGAGTTCAAAAGGGCATGAGAACGGAGACGCCAGC
AAGGAGGGCAGCGGTAGTACACCCGGAGATGGCGGAGACAACCGAAATGC
AGCTGATGAAGAAAGCTCGCCGAATACCATCCCGCCAAAGAGGGGGGCAG
CCGACGCGGAGGAAGACGCCAGCAAGGAGGGCAGCGGTAGTACACCCGGA
GATGGCGGAGACAACCGAAATGCAGCTGATGAAGAAAGCTCGCCGAATAC
CATCCCGCCAAAGAGGGGGGCAGCCGACGCGGAGGAAGGTCGAGCACCGC
CGTCCAAGAAGTCAAGGAGGGGTGATGCTACAATTCGTGACAGTGATCTT
TCTGCCGCTGAGGGGGCCGGTGAGAATCCATACATAGGTCGAGCACCGCC
GTCCAAGAAGTCAAGGAGGGGTGATGCTACAATTCGTGACAGTGATCTTT
CTGCCGCTGAGGGGGCCGGTGAGAATCCATACATAG
back to top