mRNA_P-fluviatile_contig11.1300.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1300.1
Unique NamemRNA_P-fluviatile_contig11.1300.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3489713..3490426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size164
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815427.4126751-CDS-P-fluviatile_contig11:3489713..34897931622815427.4126751-CDS-P-fluviatile_contig11:3489713..3489793Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3489714..3489793 -
1693561813.1781633-CDS-P-fluviatile_contig11:3489713..34897931693561813.1781633-CDS-P-fluviatile_contig11:3489713..3489793Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3489714..3489793 -
1622815427.4228785-CDS-P-fluviatile_contig11:3490344..34904261622815427.4228785-CDS-P-fluviatile_contig11:3490344..3490426Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3490345..3490426 -
1693561813.1877422-CDS-P-fluviatile_contig11:3490344..34904261693561813.1877422-CDS-P-fluviatile_contig11:3490344..3490426Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3490345..3490426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1300.1prot_P-fluviatile_contig11.1300.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3489714..3490426 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1300.1

>prot_P-fluviatile_contig11.1300.1 ID=prot_P-fluviatile_contig11.1300.1|Name=mRNA_P-fluviatile_contig11.1300.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=54bp
GCEPHWAENERASNKHSKASTQKRAATGELNSRYNRHPAVGGIPSPGRPA
RLDA
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mRNA from alignment at P-fluviatile_contig11:3489713..3490426-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1300.1 ID=mRNA_P-fluviatile_contig11.1300.1|Name=mRNA_P-fluviatile_contig11.1300.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=714bp|location=Sequence derived from alignment at P-fluviatile_contig11:3489713..3490426- (Porterinema fluviatile SAG_2381)
GGCTGTGAGCCCCACTGGGCTGAAAACGAGAGGGCGTCGAATAAACACTC
AAAAGCTTCAACCCAGAAGCGAGCAGCTACAGGTGGGAAGTAGTTTCGTG
ACGGGCTGGATATTAATTTCAGGCGAGACCAACTTCGAGAGGCTTCACCT
TAAAAAGCTACCAAAACCTTTCATAAACATTACGTGCTCTACTGGTGCTA
CCGTGGCCGATTGCGTCTGTTGTTGGAGTTGCTTTTGTGATGGCAGTGGC
TTTGTGGTGGCGTTGTTGGACTTCTTTGAATGTTGATTGTCAGTGGAGTA
CTGAAGATAGCCATTTCACCACCATCCGCAAACGCAACCGGCACTACTCA
CCGCCATGACGCTCATGTTCAGGTTCACTTAGCTCATTTGACAGGTTGAT
AGGCTATTTGTCGGGGGTTCGCTGTTTACGGTCTATAGTTAGACCTGATT
TAGTTGTATGCCACGTCCTTGAAAGAGTAACTGTGTGTAGGGGGCGTGAA
GTCTTTCTTGAGGAGTGCACATTCTAGCATTGAATGCATGCTTAAAAGGG
TACCGAGGCAAAAACAAACACCTCAAGCGCAGCCGGATGGTTATTTCAAA
CAAGTTTGTCCCTCCTCTGTTTACGTGTACCAGGCGAACTCAACTCAAGA
TATAATCGCCACCCAGCAGTAGGCGGAATACCCTCACCAGGGCGACCCGC
ACGCCTGGACGCGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:3489713..3490426-

>mRNA_P-fluviatile_contig11.1300.1 ID=mRNA_P-fluviatile_contig11.1300.1|Name=mRNA_P-fluviatile_contig11.1300.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=324bp|location=Sequence derived from alignment at P-fluviatile_contig11:3489713..3490426- (Porterinema fluviatile SAG_2381)
GGCTGTGAGCCCCACTGGGCTGAAAACGAGAGGGCGTCGAATAAACACTC
AAAAGCTTCAACCCAGAAGCGAGCAGCTACAGGGCTGTGAGCCCCACTGG
GCTGAAAACGAGAGGGCGTCGAATAAACACTCAAAAGCTTCAACCCAGAA
GCGAGCAGCTACAGGCGAACTCAACTCAAGATATAATCGCCACCCAGCAG
TAGGCGGAATACCCTCACCAGGGCGACCCGCACGCCTGGACGCGGCGAAC
TCAACTCAAGATATAATCGCCACCCAGCAGTAGGCGGAATACCCTCACCA
GGGCGACCCGCACGCCTGGACGCG
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