mRNA_P-fluviatile_contig11.1299.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1299.1
Unique NamemRNA_P-fluviatile_contig11.1299.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3462567..3463493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size550
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1299.1prot_P-fluviatile_contig11.1299.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3462584..3462991 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.3280454-UTR-P-fluviatile_contig11:3462566..34625831622815430.3280454-UTR-P-fluviatile_contig11:3462566..3462583Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3462567..3462583 -
1693561819.7272663-UTR-P-fluviatile_contig11:3462566..34625831693561819.7272663-UTR-P-fluviatile_contig11:3462566..3462583Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3462567..3462583 -
1622815430.3503413-UTR-P-fluviatile_contig11:3462991..34630071622815430.3503413-UTR-P-fluviatile_contig11:3462991..3463007Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3462992..3463007 -
1693561819.7463524-UTR-P-fluviatile_contig11:3462991..34630071693561819.7463524-UTR-P-fluviatile_contig11:3462991..3463007Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3462992..3463007 -
1622815430.359877-UTR-P-fluviatile_contig11:3463384..34634931622815430.359877-UTR-P-fluviatile_contig11:3463384..3463493Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3463385..3463493 -
1693561819.7552507-UTR-P-fluviatile_contig11:3463384..34634931693561819.7552507-UTR-P-fluviatile_contig11:3463384..3463493Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3463385..3463493 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.3397598-CDS-P-fluviatile_contig11:3462583..34629911622815430.3397598-CDS-P-fluviatile_contig11:3462583..3462991Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3462584..3462991 -
1693561819.7359607-CDS-P-fluviatile_contig11:3462583..34629911693561819.7359607-CDS-P-fluviatile_contig11:3462583..3462991Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3462584..3462991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1299.1

>prot_P-fluviatile_contig11.1299.1 ID=prot_P-fluviatile_contig11.1299.1|Name=mRNA_P-fluviatile_contig11.1299.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=136bp
MIQGAMKCFRAPTPTGWSARKENSAARFGILDVFLSTLQSTSDESVEAPT
VSRNPPSLPWIPALRFASTCADGVFKHGFSVRAIASWTLVERLFSVVLPH
FVGRGNTSRNFCCSEAEHSDTFPRRGRLTMAAVHQ*
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mRNA from alignment at P-fluviatile_contig11:3462567..3463493-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1299.1 ID=mRNA_P-fluviatile_contig11.1299.1|Name=mRNA_P-fluviatile_contig11.1299.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=927bp|location=Sequence derived from alignment at P-fluviatile_contig11:3462567..3463493- (Porterinema fluviatile SAG_2381)
TCGCCTTGTCTCCTGCCGAGGAAGCTAATACACTCAGTAAACATCCATAT
CTCTTCATCAAGCACAACAAGGGCATACAGTGCGGGCGTAAACGAACATT
GATGATTAGGTGAGCCGTACGACACTCCTCCCAGAGTCAAATCTTCCGCA
TGCTTGGAGGCGCAATGACCCACTTTTTCTCCTTAGTTAGACTGTTTCAT
CCCGCCGAATGCAACCGAAGGGAAGGACGTACCCCGTTGACGTATTCGTT
CTCTAGCAAACACAAGACAAAGCCTGAGTTATAGAAGAAGGACGTGACAA
CCGAGAAAATCCATAACTAGGCCGAAAGATGTGGATGACAACAATCACGC
AGACATGTAGGTCTCATCGCAAAGCACCAGCGATAGCGACCGTTTTTGTT
TCACTCCTTCACTGAAAGCGAAGAATGGCCACATCCCCCACTCCCTATGC
ACTCCCTATGCGCTCTTCACAACTGTTGTTTTCCAGGGGCCATGAATGAC
CCATGATCCAAGGCGCCATGAAGTGTTTCAGAGCGCCTACACCAACTGGC
TGGTCAGCCCGAAAAGAAAATTCGGCAGCAAGGTTCGGAATTTTGGATGT
TTTTCTATCAACGCTCCAAAGCACGAGTGACGAAAGTGTCGAGGCTCCTA
CCGTCTCGAGGAACCCGCCTAGTTTGCCGTGGATACCCGCCCTTCGCTTT
GCGTCAACATGTGCTGATGGTGTCTTCAAACACGGTTTCTCTGTGAGGGC
TATTGCATCCTGGACGCTAGTTGAAAGGCTGTTCTCGGTAGTTTTACCGC
ATTTCGTTGGCCGCGGTAATACGAGCAGAAATTTCTGCTGTTCTGAGGCA
GAGCATTCAGATACATTCCCGCGACGGGGCCGTCTGACAATGGCGGCCGT
CCACCAGTAGCAGTCGTCAATATTGCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:3462567..3463493-

>mRNA_P-fluviatile_contig11.1299.1 ID=mRNA_P-fluviatile_contig11.1299.1|Name=mRNA_P-fluviatile_contig11.1299.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=816bp|location=Sequence derived from alignment at P-fluviatile_contig11:3462567..3463493- (Porterinema fluviatile SAG_2381)
ATGATCCAAGGCGCCATGAAGTGTTTCAGAGCGCCTACACCAACTGGCTG
GTCAGCCCGAAAAGAAAATTCGGCAGCAAGGTTCGGAATTTTGGATGTTT
TTCTATCAACGCTCCAAAGCACGAGTGACGAAAGTGTCGAGGCTCCTACC
GTCTCGAGGAACCCGCCTAGTTTGCCGTGGATACCCGCCCTTCGCTTTGC
GTCAACATGTGCTGATGGTGTCTTCAAACACGGTTTCTCTGTGAGGGCTA
TTGCATCCTGGACGCTAGTTGAAAGGCTGTTCTCGGTAGTTTTACCGCAT
TTCGTTGGCCGCGGTAATACGAGCAGAAATTTCTGCTGTTCTGAGGCAGA
GCATTCAGATACATTCCCGCGACGGGGCCGTCTGACAATGGCGGCCGTCC
ACCAGTAGATGATCCAAGGCGCCATGAAGTGTTTCAGAGCGCCTACACCA
ACTGGCTGGTCAGCCCGAAAAGAAAATTCGGCAGCAAGGTTCGGAATTTT
GGATGTTTTTCTATCAACGCTCCAAAGCACGAGTGACGAAAGTGTCGAGG
CTCCTACCGTCTCGAGGAACCCGCCTAGTTTGCCGTGGATACCCGCCCTT
CGCTTTGCGTCAACATGTGCTGATGGTGTCTTCAAACACGGTTTCTCTGT
GAGGGCTATTGCATCCTGGACGCTAGTTGAAAGGCTGTTCTCGGTAGTTT
TACCGCATTTCGTTGGCCGCGGTAATACGAGCAGAAATTTCTGCTGTTCT
GAGGCAGAGCATTCAGATACATTCCCGCGACGGGGCCGTCTGACAATGGC
GGCCGTCCACCAGTAG
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