mRNA_P-fluviatile_contig11.1297.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1297.1
Unique NamemRNA_P-fluviatile_contig11.1297.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.1297.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.490e-28
Identity = 56/121 (46.28%), Postives = 85/121 (70.25%), Query Frame = 1 
Query:   88 IRKRMIGDLTPPFFGGPSPGPLSLSNCAVFLEEKMRSMFRSLESGVARLETDELIDGAWVTVPDEYTPRRVEMLSEFLQGHLATRDAMDSDAPLEVWSITGDILLKDKDEVTCTDYLRLLV 450
            +RKR+ GD   P +GGPS GPL+++N AV L++K+ S+ R++ESG  RLE D  +DG +VT  DE+TPRRVE++S+ +Q +L+    + +   + V+ ITG+++ K   EVT TD+LRL V
Sbjct:    1 MRKRIAGDKPCPVYGGPSSGPLTIANSAVMLQDKVMSVLRNVESGKMRLEPDVYVDGRYVTFADEFTPRRVELISDLVQDYLSVSQQIANSDHVHVYLITGEVITKPHREVTATDWLRLYV 121
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BLAST of mRNA_P-fluviatile_contig11.1297.1 vs. uniprot
Match: A0A6H5J849_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J849_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.130e-24
Identity = 56/132 (42.42%), Postives = 84/132 (63.64%), Query Frame = 1 
Query:   88 IRKRMIGDLTPPFFGGPSPGPLSLSNCAVF-----------LEEKMRSMFRSLESGVARLETDELIDGAWVTVPDEYTPRRVEMLSEFLQGHLATRDAMDSDAPLEVWSITGDILLKDKDEVTCTDYLRLLV 450
            +RKR+ GD   P +GGPS GPL+++N AV            L +K+ S+  ++ESG  RLE D  +DG +VT  DE+TPRRVE++S+F+Q +L+    + +   + V+ ITG+++ K   EVT TD+LRL V
Sbjct:    1 MRKRIAGDKPCPVYGGPSSGPLTIANSAVMXXXXXXXXXXMLLDKVMSVLHNVESGKMRLEPDVYVDGRYVTFADEFTPRRVELISDFVQEYLSVSQQIANADHVHVYLITGEVITKPHREVTATDWLRLYV 132
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BLAST of mRNA_P-fluviatile_contig11.1297.1 vs. uniprot
Match: A0A6H5KZY5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY5_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 9.320e-24
Identity = 51/113 (45.13%), Postives = 76/113 (67.26%), Query Frame = 1 
Query:  106 GDLTPPFFGGPSPGPLSLSNCAVFLEEKMRSMFRSLESGVARLETDELIDGAWVTVPDEYTPRRVEMLSEFLQGHLATRDAMDSDAPLEVWSITGDILLKDKDEVTCTDYLRL 444
            GD   P +GGPS GPL+++N AV L++K+ S+ R++ESG  RLE D  +DG +VTV DE+TPRRVE++S+ +Q +      +     + V+ I G+++ K   EVT TD+LRL
Sbjct:  190 GDQPCPVYGGPSSGPLTIANSAVMLQDKVMSVLRNVESGKMRLEPDVYVDGRFVTVADEFTPRRVELISDLVQEYSPVSQQIAKTDHVHVYLINGEVITKPHREVTATDWLRL 302
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BLAST of mRNA_P-fluviatile_contig11.1297.1 vs. uniprot
Match: A0A6H5J7F8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7F8_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.560e-11
Identity = 31/91 (34.07%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:  178 LEEKMRSMFRSLESGVARLETDELIDGAWVTVPDEYTPRRVEMLSEFLQGHLATRDAMDSDAPLEVWSITGDILLKDKDEVTCTDYLRLLV 450
            L++K+ S+ R+++SG+ RLE D  ++G ++TV D+ TPRRVE+LS+     ++    + +   + +  ++G+++ K  ++ T TD+LRL V
Sbjct:    2 LQDKVMSVLRTVDSGMMRLEPDVYVNGQYITVADDLTPRRVELLSDLAHEFMSVSQPIANAHTVNIHLLSGEVIAKPHEQATTTDWLRLYV 92
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KEH2_9PHAE2.490e-2846.28RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5J849_9PHAE1.130e-2442.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZY5_9PHAE9.320e-2445.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J7F8_9PHAE1.560e-1134.07Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3455284..3455733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size451
Cds size435
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.2454526-UTR-P-fluviatile_contig11:3455283..34552981622815430.2454526-UTR-P-fluviatile_contig11:3455283..3455298Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3455284..3455298 +
1693561819.6709726-UTR-P-fluviatile_contig11:3455283..34552981693561819.6709726-UTR-P-fluviatile_contig11:3455283..3455298Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3455284..3455298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.2561994-CDS-P-fluviatile_contig11:3455298..34557331622815430.2561994-CDS-P-fluviatile_contig11:3455298..3455733Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3455299..3455733 +
1693561819.6876566-CDS-P-fluviatile_contig11:3455298..34557331693561819.6876566-CDS-P-fluviatile_contig11:3455298..3455733Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3455299..3455733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1297.1prot_P-fluviatile_contig11.1297.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3455299..3455733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1297.1

>prot_P-fluviatile_contig11.1297.1 ID=prot_P-fluviatile_contig11.1297.1|Name=mRNA_P-fluviatile_contig11.1297.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=145bp
MVFTRDDRKRVGFSDATSAKGFEGIRKRMIGDLTPPFFGGPSPGPLSLSN
CAVFLEEKMRSMFRSLESGVARLETDELIDGAWVTVPDEYTPRRVEMLSE
FLQGHLATRDAMDSDAPLEVWSITGDILLKDKDEVTCTDYLRLLV
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mRNA from alignment at P-fluviatile_contig11:3455284..3455733+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1297.1 ID=mRNA_P-fluviatile_contig11.1297.1|Name=mRNA_P-fluviatile_contig11.1297.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=450bp|location=Sequence derived from alignment at P-fluviatile_contig11:3455284..3455733+ (Porterinema fluviatile SAG_2381)
CACCGCCGTGACGACATGGTCTTCACCAGGGATGACCGTAAGCGAGTTGG
GTTTTCGGATGCCACGTCGGCGAAAGGTTTTGAAGGTATTCGGAAGCGCA
TGATCGGCGACCTCACACCGCCGTTCTTTGGAGGTCCCTCACCTGGACCT
CTGTCTCTTTCGAACTGTGCAGTGTTTCTTGAGGAGAAAATGCGTAGCAT
GTTCCGGTCGCTCGAGTCCGGTGTTGCAAGGTTGGAAACAGATGAACTGA
TAGATGGTGCGTGGGTGACGGTTCCCGATGAGTACACCCCGCGGAGAGTC
GAGATGCTTTCGGAATTCCTTCAGGGGCACTTGGCCACTCGGGATGCAAT
GGATTCCGATGCTCCGCTGGAAGTGTGGTCCATCACAGGGGACATACTTT
TAAAGGACAAAGACGAGGTAACATGCACCGACTATCTTCGTTTGTTGGTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:3455284..3455733+

>mRNA_P-fluviatile_contig11.1297.1 ID=mRNA_P-fluviatile_contig11.1297.1|Name=mRNA_P-fluviatile_contig11.1297.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=870bp|location=Sequence derived from alignment at P-fluviatile_contig11:3455284..3455733+ (Porterinema fluviatile SAG_2381)
ATGGTCTTCACCAGGGATGACCGTAAGCGAGTTGGGTTTTCGGATGCCAC
GTCGGCGAAAGGTTTTGAAGGTATTCGGAAGCGCATGATCGGCGACCTCA
CACCGCCGTTCTTTGGAGGTCCCTCACCTGGACCTCTGTCTCTTTCGAAC
TGTGCAGTGTTTCTTGAGGAGAAAATGCGTAGCATGTTCCGGTCGCTCGA
GTCCGGTGTTGCAAGGTTGGAAACAGATGAACTGATAGATGGTGCGTGGG
TGACGGTTCCCGATGAGTACACCCCGCGGAGAGTCGAGATGCTTTCGGAA
TTCCTTCAGGGGCACTTGGCCACTCGGGATGCAATGGATTCCGATGCTCC
GCTGGAAGTGTGGTCCATCACAGGGGACATACTTTTAAAGGACAAAGACG
AGGTAACATGCACCGACTATCTTCGTTTGTTGGTCATGGTCTTCACCAGG
GATGACCGTAAGCGAGTTGGGTTTTCGGATGCCACGTCGGCGAAAGGTTT
TGAAGGTATTCGGAAGCGCATGATCGGCGACCTCACACCGCCGTTCTTTG
GAGGTCCCTCACCTGGACCTCTGTCTCTTTCGAACTGTGCAGTGTTTCTT
GAGGAGAAAATGCGTAGCATGTTCCGGTCGCTCGAGTCCGGTGTTGCAAG
GTTGGAAACAGATGAACTGATAGATGGTGCGTGGGTGACGGTTCCCGATG
AGTACACCCCGCGGAGAGTCGAGATGCTTTCGGAATTCCTTCAGGGGCAC
TTGGCCACTCGGGATGCAATGGATTCCGATGCTCCGCTGGAAGTGTGGTC
CATCACAGGGGACATACTTTTAAAGGACAAAGACGAGGTAACATGCACCG
ACTATCTTCGTTTGTTGGTC
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