mRNA_P-fluviatile_contig11.1294.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1294.1
Unique NamemRNA_P-fluviatile_contig11.1294.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3426726..3427696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size334
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815427.294029-CDS-P-fluviatile_contig11:3426725..34268651622815427.294029-CDS-P-fluviatile_contig11:3426725..3426865Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3426726..3426865 -
1693561809.6329358-CDS-P-fluviatile_contig11:3426725..34268651693561809.6329358-CDS-P-fluviatile_contig11:3426725..3426865Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3426726..3426865 -
1622815427.3051057-CDS-P-fluviatile_contig11:3427503..34276961622815427.3051057-CDS-P-fluviatile_contig11:3427503..3427696Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3427504..3427696 -
1693561809.6453154-CDS-P-fluviatile_contig11:3427503..34276961693561809.6453154-CDS-P-fluviatile_contig11:3427503..3427696Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3427504..3427696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1294.1prot_P-fluviatile_contig11.1294.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3426726..3427696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1294.1

>prot_P-fluviatile_contig11.1294.1 ID=prot_P-fluviatile_contig11.1294.1|Name=mRNA_P-fluviatile_contig11.1294.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=111bp
AKFQGIKRERGRERELHKDDPSCLKKAMRPMNAAKDLNIILRAAFDRYAA
LESSGSPLSMTAQEGYHNESAKEGYGQSISTSIAGWKRDAGSLVSDPGRV
SLRSRPALYSE
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mRNA from alignment at P-fluviatile_contig11:3426726..3427696-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1294.1 ID=mRNA_P-fluviatile_contig11.1294.1|Name=mRNA_P-fluviatile_contig11.1294.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=971bp|location=Sequence derived from alignment at P-fluviatile_contig11:3426726..3427696- (Porterinema fluviatile SAG_2381)
GCGAAGTTTCAAGGAATCAAAAGAGAGAGAGGGCGCGAAAGAGAGCTGCA
CAAAGACGATCCTTCCTGCCTGAAGAAAGCAATGCGCCCGATGAATGCCG
CGAAAGACCTCAACATCATTCTGAGGGCCGCCTTCGATCGGTACGCAGCG
CTGGAGAGCAGCGGCTCCCCACTCTCGATGACGGCGCAAGAAGGTCGGTG
TAAGTTCGAGTTTTTTTTGGGGGGTGCGAGCTAGGTTTCCCGCTTTCGGT
GTATCTTCTCGGGCGGGGGGGGGTGGACAACGCACCACCATAATGCCATG
ATTGAAACAAAACTGTATGGAGAGATCCGGATTGGCATCGTTGAATCTTC
GTGGACATCGTCGATTTAGGGTCTACCGAGCTGATTCGAGCAGACGAATC
CCGCATCATGTTTTCGGGCGGATGGATATCGGAGTATGATACCATGAAAG
CCTGTCCGATTCCGTGCACGACATCGAAGACACAACAAGAGAGGACAGCG
GTTTTCCTGAAGTAAACGACCTCAAGACGATCGGCGACGCCGCACACCGC
CTGGGAAATAGGGTGTGTTAAGAATCGGTAGCGACGTACTCGATCGAACA
ACTGCGGGCATCCGATGTTTTCATCTCACCGGCAGCCTCCCCGCAAACAA
AACGAGGCGCTCAGGACACTCAGATCAGTCAATCCTTACGAGTGGTGGAG
ATCTCAAAGTAGCCAGGACGTGCTTACCCTTGATGACAGAAACACCATTT
TTTTGGCGGCGCACACCGTTTCATATGACGGATAAAACGACGAAACGCCC
TGCCCTTTCCGTCGTCGATCACCCTGTTCAGGGTATCACAACGAAAGCGC
AAAGGAGGGGTATGGACAAAGCATTTCGACCAGCATCGCCGGCTGGAAGA
GGGATGCAGGGTCCTTGGTATCGGATCCCGGAAGAGTCTCGTTGCGGAGT
AGACCAGCGTTGTACTCGGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:3426726..3427696-

>mRNA_P-fluviatile_contig11.1294.1 ID=mRNA_P-fluviatile_contig11.1294.1|Name=mRNA_P-fluviatile_contig11.1294.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=666bp|location=Sequence derived from alignment at P-fluviatile_contig11:3426726..3427696- (Porterinema fluviatile SAG_2381)
GCGAAGTTTCAAGGAATCAAAAGAGAGAGAGGGCGCGAAAGAGAGCTGCA
CAAAGACGATCCTTCCTGCCTGAAGAAAGCAATGCGCCCGATGAATGCCG
CGAAAGACCTCAACATCATTCTGAGGGCCGCCTTCGATCGGTACGCAGCG
CTGGAGAGCAGCGGCTCCCCACTCTCGATGACGGCGCAAGAAGGCGAAGT
TTCAAGGAATCAAAAGAGAGAGAGGGCGCGAAAGAGAGCTGCACAAAGAC
GATCCTTCCTGCCTGAAGAAAGCAATGCGCCCGATGAATGCCGCGAAAGA
CCTCAACATCATTCTGAGGGCCGCCTTCGATCGGTACGCAGCGCTGGAGA
GCAGCGGCTCCCCACTCTCGATGACGGCGCAAGAAGGGTATCACAACGAA
AGCGCAAAGGAGGGGTATGGACAAAGCATTTCGACCAGCATCGCCGGCTG
GAAGAGGGATGCAGGGTCCTTGGTATCGGATCCCGGAAGAGTCTCGTTGC
GGAGTAGACCAGCGTTGTACTCGGAGGGTATCACAACGAAAGCGCAAAGG
AGGGGTATGGACAAAGCATTTCGACCAGCATCGCCGGCTGGAAGAGGGAT
GCAGGGTCCTTGGTATCGGATCCCGGAAGAGTCTCGTTGCGGAGTAGACC
AGCGTTGTACTCGGAG
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