mRNA_P-fluviatile_contig11.1292.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1292.1
Unique NamemRNA_P-fluviatile_contig11.1292.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3399990..3400394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size406
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.14824-CDS-P-fluviatile_contig11:3399989..34003791622815430.14824-CDS-P-fluviatile_contig11:3399989..3400379Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3399990..3400379 +
1693561819.6479526-CDS-P-fluviatile_contig11:3399989..34003791693561819.6479526-CDS-P-fluviatile_contig11:3399989..3400379Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3399990..3400379 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.1608853-UTR-P-fluviatile_contig11:3400379..34003941622815430.1608853-UTR-P-fluviatile_contig11:3400379..3400394Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3400380..3400394 +
1693561819.6556041-UTR-P-fluviatile_contig11:3400379..34003941693561819.6556041-UTR-P-fluviatile_contig11:3400379..3400394Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3400380..3400394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1292.1prot_P-fluviatile_contig11.1292.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3399990..3400379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1292.1

>prot_P-fluviatile_contig11.1292.1 ID=prot_P-fluviatile_contig11.1292.1|Name=mRNA_P-fluviatile_contig11.1292.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=130bp
QKQYFSSRSVGIRYIQKSIRLQPEQTGDDLSVSSDHFFFVWPTFLFFEVS
SSFHLRALKLQNRGVKGQRRALWRSPRRAQNRKKTNKFTDGLDATTPLFL
TTLPCYRRLWLKINACAPLVPTFRCSRWP*
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mRNA from alignment at P-fluviatile_contig11:3399990..3400394+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1292.1 ID=mRNA_P-fluviatile_contig11.1292.1|Name=mRNA_P-fluviatile_contig11.1292.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=405bp|location=Sequence derived from alignment at P-fluviatile_contig11:3399990..3400394+ (Porterinema fluviatile SAG_2381)
CAGAAGCAATATTTTTCGTCGAGGTCGGTGGGCATTCGATACATCCAAAA
ATCAATCCGCCTCCAGCCCGAGCAAACAGGAGACGATCTCTCCGTCTCCT
CGGATCATTTTTTCTTTGTTTGGCCAACATTCTTGTTCTTCGAAGTAAGT
TCATCTTTTCATCTTCGCGCATTAAAACTACAAAATCGCGGTGTCAAAGG
CCAGCGTCGCGCATTATGGAGGAGCCCGCGACGAGCACAGAACAGGAAGA
AAACAAATAAATTCACGGATGGCCTCGACGCAACAACACCACTTTTCTTG
ACTACCCTACCGTGCTACAGGCGGCTGTGGTTAAAAATAAACGCTTGCGC
GCCTTTGGTGCCTACCTTCCGCTGCTCCCGGTGGCCTTAGCCCTCAGCAG
AGCCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:3399990..3400394+

>mRNA_P-fluviatile_contig11.1292.1 ID=mRNA_P-fluviatile_contig11.1292.1|Name=mRNA_P-fluviatile_contig11.1292.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=780bp|location=Sequence derived from alignment at P-fluviatile_contig11:3399990..3400394+ (Porterinema fluviatile SAG_2381)
CAGAAGCAATATTTTTCGTCGAGGTCGGTGGGCATTCGATACATCCAAAA
ATCAATCCGCCTCCAGCCCGAGCAAACAGGAGACGATCTCTCCGTCTCCT
CGGATCATTTTTTCTTTGTTTGGCCAACATTCTTGTTCTTCGAAGTAAGT
TCATCTTTTCATCTTCGCGCATTAAAACTACAAAATCGCGGTGTCAAAGG
CCAGCGTCGCGCATTATGGAGGAGCCCGCGACGAGCACAGAACAGGAAGA
AAACAAATAAATTCACGGATGGCCTCGACGCAACAACACCACTTTTCTTG
ACTACCCTACCGTGCTACAGGCGGCTGTGGTTAAAAATAAACGCTTGCGC
GCCTTTGGTGCCTACCTTCCGCTGCTCCCGGTGGCCTTAGCAGAAGCAAT
ATTTTTCGTCGAGGTCGGTGGGCATTCGATACATCCAAAAATCAATCCGC
CTCCAGCCCGAGCAAACAGGAGACGATCTCTCCGTCTCCTCGGATCATTT
TTTCTTTGTTTGGCCAACATTCTTGTTCTTCGAAGTAAGTTCATCTTTTC
ATCTTCGCGCATTAAAACTACAAAATCGCGGTGTCAAAGGCCAGCGTCGC
GCATTATGGAGGAGCCCGCGACGAGCACAGAACAGGAAGAAAACAAATAA
ATTCACGGATGGCCTCGACGCAACAACACCACTTTTCTTGACTACCCTAC
CGTGCTACAGGCGGCTGTGGTTAAAAATAAACGCTTGCGCGCCTTTGGTG
CCTACCTTCCGCTGCTCCCGGTGGCCTTAG
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