mRNA_P-fluviatile_contig11.1282.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1282.1
Unique NamemRNA_P-fluviatile_contig11.1282.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.1282.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 4.230e-21
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:  190 MVEYYNPAGQQHPGSATASSAPAPPAGIGFSFIASSTAPAPSFTMTVDTGASNHFLDSEL 369
            MVEYY+P+GQ  PGS TASSAPAPPAGIGFSFIA STAPA +FTMTVDTGASNHFLD+EL
Sbjct:    1 MVEYYSPSGQHAPGSTTASSAPAPPAGIGFSFIADSTAPAQTFTMTVDTGASNHFLDNEL 60
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAG6_9PHAE4.230e-2185.00Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3282094..3282462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.115056-CDS-P-fluviatile_contig11:3282093..32824621622815430.115056-CDS-P-fluviatile_contig11:3282093..3282462Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3282094..3282462 +
1693561819.6369505-CDS-P-fluviatile_contig11:3282093..32824621693561819.6369505-CDS-P-fluviatile_contig11:3282093..3282462Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3282094..3282462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1282.1prot_P-fluviatile_contig11.1282.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3282094..3282462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1282.1

>prot_P-fluviatile_contig11.1282.1 ID=prot_P-fluviatile_contig11.1282.1|Name=mRNA_P-fluviatile_contig11.1282.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=123bp
QNWCTLHKTSQHDNSTCRQQQNRNNGGGGGFRGRQQHGRHQGQRNNAPQA
HYGQTSAAPPSTTMVEYYNPAGQQHPGSATASSAPAPPAGIGFSFIASST
APAPSFTMTVDTGASNHFLDSEL
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mRNA from alignment at P-fluviatile_contig11:3282094..3282462+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1282.1 ID=mRNA_P-fluviatile_contig11.1282.1|Name=mRNA_P-fluviatile_contig11.1282.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=369bp|location=Sequence derived from alignment at P-fluviatile_contig11:3282094..3282462+ (Porterinema fluviatile SAG_2381)
CAAAACTGGTGCACTCTTCATAAAACCTCACAGCACGACAATTCTACTTG
TCGGCAACAACAAAACCGGAACAACGGCGGCGGCGGCGGCTTCAGAGGTC
GTCAGCAGCACGGACGCCACCAAGGTCAGAGGAACAATGCACCACAAGCA
CACTACGGACAAACCTCCGCAGCTCCACCTTCTACAACCATGGTGGAGTA
CTACAATCCGGCCGGGCAGCAGCATCCCGGTTCGGCCACTGCCTCATCTG
CTCCGGCGCCTCCAGCGGGTATTGGCTTCTCCTTTATCGCCAGCAGCACC
GCGCCGGCGCCAAGCTTTACCATGACCGTCGACACCGGCGCCTCCAACCA
CTTCCTTGACAGCGAGCTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:3282094..3282462+

>mRNA_P-fluviatile_contig11.1282.1 ID=mRNA_P-fluviatile_contig11.1282.1|Name=mRNA_P-fluviatile_contig11.1282.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=738bp|location=Sequence derived from alignment at P-fluviatile_contig11:3282094..3282462+ (Porterinema fluviatile SAG_2381)
CAAAACTGGTGCACTCTTCATAAAACCTCACAGCACGACAATTCTACTTG
TCGGCAACAACAAAACCGGAACAACGGCGGCGGCGGCGGCTTCAGAGGTC
GTCAGCAGCACGGACGCCACCAAGGTCAGAGGAACAATGCACCACAAGCA
CACTACGGACAAACCTCCGCAGCTCCACCTTCTACAACCATGGTGGAGTA
CTACAATCCGGCCGGGCAGCAGCATCCCGGTTCGGCCACTGCCTCATCTG
CTCCGGCGCCTCCAGCGGGTATTGGCTTCTCCTTTATCGCCAGCAGCACC
GCGCCGGCGCCAAGCTTTACCATGACCGTCGACACCGGCGCCTCCAACCA
CTTCCTTGACAGCGAGCTGCAAAACTGGTGCACTCTTCATAAAACCTCAC
AGCACGACAATTCTACTTGTCGGCAACAACAAAACCGGAACAACGGCGGC
GGCGGCGGCTTCAGAGGTCGTCAGCAGCACGGACGCCACCAAGGTCAGAG
GAACAATGCACCACAAGCACACTACGGACAAACCTCCGCAGCTCCACCTT
CTACAACCATGGTGGAGTACTACAATCCGGCCGGGCAGCAGCATCCCGGT
TCGGCCACTGCCTCATCTGCTCCGGCGCCTCCAGCGGGTATTGGCTTCTC
CTTTATCGCCAGCAGCACCGCGCCGGCGCCAAGCTTTACCATGACCGTCG
ACACCGGCGCCTCCAACCACTTCCTTGACAGCGAGCTG
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