mRNA_P-fluviatile_contig11.1269.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1269.1
Unique NamemRNA_P-fluviatile_contig11.1269.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3157231..3158352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_000390.1
Exons2
Model size573
Cds size570
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815427.2410808-CDS-P-fluviatile_contig11:3157231..31576161622815427.2410808-CDS-P-fluviatile_contig11:3157231..3157616Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3157232..3157616 -
1693561809.617045-CDS-P-fluviatile_contig11:3157231..31576161693561809.617045-CDS-P-fluviatile_contig11:3157231..3157616Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3157232..3157616 -
1622815427.2583463-CDS-P-fluviatile_contig11:3158167..31583521622815427.2583463-CDS-P-fluviatile_contig11:3158167..3158352Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3158168..3158352 -
1693561809.6248481-CDS-P-fluviatile_contig11:3158167..31583521693561809.6248481-CDS-P-fluviatile_contig11:3158167..3158352Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3158168..3158352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1269.1prot_P-fluviatile_contig11.1269.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3157232..3158352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1269.1

>prot_P-fluviatile_contig11.1269.1 ID=prot_P-fluviatile_contig11.1269.1|Name=mRNA_P-fluviatile_contig11.1269.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=190bp
RNGVGGVGIGVANSSAGARGGATTRNRKARPRATAVAGPGHHPSKRRRNG
SHLSSGGASSFRNVGKPSVLPIEESFTDDFPAALTAVSAAVTAAATAAAA
AAAAPQARSESAPCLSHADEDARANSLQVSGRRRPARGGVNHNDSSSRSS
QKGATAAGDRADMDVMDTTTEARGAHRCAAIPETSSSLLP
back to top

mRNA from alignment at P-fluviatile_contig11:3157231..3158352-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1269.1 ID=mRNA_P-fluviatile_contig11.1269.1|Name=mRNA_P-fluviatile_contig11.1269.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1122bp|location=Sequence derived from alignment at P-fluviatile_contig11:3157231..3158352- (Porterinema fluviatile SAG_2381)
AGAAATGGCGTGGGAGGCGTCGGCATCGGCGTTGCTAACTCTAGCGCTGG
TGCGAGAGGCGGCGCCACGACGAGAAACCGAAAAGCGCGACCCCGGGCGA
CCGCAGTAGCGGGTCCTGGTCATCACCCGTCGAAGAGGCGCAGGAACGGC
TCCCATTTGTCGTCGGGGGGGGCGTCGTCGTTCAGGTGCGGAGCAAACAC
ACGACGCTAGAGACGGCAGACACATCGGCACAAGTGTTTTTTGTCGTTTT
GAGCGCCCAACGTGCTCGCTGGAAGCAGCCCTGTCCGTGTCGAGTAAACG
GTAGTGTTTCTCGTAGTGGTACTCGCATTACGATCGGGTAATTCCTCTTC
GTAGTCGTTCACACGAGCCCTGATGTGGCAGAAAAACTCGTCCGACAAAA
AAACAACGGAAACGTCAAAATCGAGGCGTGAAGTAAGGGAGAGTTGCTGT
TGTCCACGGGGAACTGAGACTTCAGAGAGTAAGCACTCCTCTGCCAGGAC
CACGGACTGATCATCGCTCCGTTGCAGTGCTAGAGATATTCTGGGAAATT
TGACCAAGGTCTTCTCTCCAGCGAGACGTGCTGTTTTTTCCCAATTTTTT
GCAAAGCGCACAGACGATACGACTGCCACAAAGGAGACATATGATCGAGT
CGAGGCAATTCCTACGTATTTCCACCGACAAACGTTCTCTCCCGATCGAA
ACGGGACCCTTCGTCTCCGCCCCCCTCTCCCCCTAGGAACGTCGGAAAAC
CTTCGGTGCTGCCCATCGAAGAGAGTTTCACCGACGATTTTCCCGCGGCA
TTGACGGCAGTTTCAGCCGCCGTGACAGCGGCCGCTACCGCTGCTGCAGC
CGCAGCGGCAGCGCCCCAAGCTCGGTCTGAGTCCGCTCCTTGCCTGAGCC
ACGCAGACGAGGACGCTCGCGCGAACTCCCTACAGGTGTCCGGCCGGCGA
CGGCCCGCTCGTGGCGGAGTGAACCACAACGACAGCAGCAGCAGGAGTAG
CCAGAAGGGGGCAACAGCGGCCGGAGATCGGGCGGACATGGACGTGATGG
ACACAACTACGGAGGCGAGAGGTGCCCATCGGTGCGCCGCCATTCCCGAA
ACCTCGTCGTCGCTCCTGCCCC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig11:3157231..3158352-

>mRNA_P-fluviatile_contig11.1269.1 ID=mRNA_P-fluviatile_contig11.1269.1|Name=mRNA_P-fluviatile_contig11.1269.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1140bp|location=Sequence derived from alignment at P-fluviatile_contig11:3157231..3158352- (Porterinema fluviatile SAG_2381)
AGAAATGGCGTGGGAGGCGTCGGCATCGGCGTTGCTAACTCTAGCGCTGG
TGCGAGAGGCGGCGCCACGACGAGAAACCGAAAAGCGCGACCCCGGGCGA
CCGCAGTAGCGGGTCCTGGTCATCACCCGTCGAAGAGGCGCAGGAACGGC
TCCCATTTGTCGTCGGGGGGGGCGTCGTCGTTCAGAGAAATGGCGTGGGA
GGCGTCGGCATCGGCGTTGCTAACTCTAGCGCTGGTGCGAGAGGCGGCGC
CACGACGAGAAACCGAAAAGCGCGACCCCGGGCGACCGCAGTAGCGGGTC
CTGGTCATCACCCGTCGAAGAGGCGCAGGAACGGCTCCCATTTGTCGTCG
GGGGGGGCGTCGTCGTTCAGGAACGTCGGAAAACCTTCGGTGCTGCCCAT
CGAAGAGAGTTTCACCGACGATTTTCCCGCGGCATTGACGGCAGTTTCAG
CCGCCGTGACAGCGGCCGCTACCGCTGCTGCAGCCGCAGCGGCAGCGCCC
CAAGCTCGGTCTGAGTCCGCTCCTTGCCTGAGCCACGCAGACGAGGACGC
TCGCGCGAACTCCCTACAGGTGTCCGGCCGGCGACGGCCCGCTCGTGGCG
GAGTGAACCACAACGACAGCAGCAGCAGGAGTAGCCAGAAGGGGGCAACA
GCGGCCGGAGATCGGGCGGACATGGACGTGATGGACACAACTACGGAGGC
GAGAGGTGCCCATCGGTGCGCCGCCATTCCCGAAACCTCGTCGTCGCTCC
TGCCCGAACGTCGGAAAACCTTCGGTGCTGCCCATCGAAGAGAGTTTCAC
CGACGATTTTCCCGCGGCATTGACGGCAGTTTCAGCCGCCGTGACAGCGG
CCGCTACCGCTGCTGCAGCCGCAGCGGCAGCGCCCCAAGCTCGGTCTGAG
TCCGCTCCTTGCCTGAGCCACGCAGACGAGGACGCTCGCGCGAACTCCCT
ACAGGTGTCCGGCCGGCGACGGCCCGCTCGTGGCGGAGTGAACCACAACG
ACAGCAGCAGCAGGAGTAGCCAGAAGGGGGCAACAGCGGCCGGAGATCGG
GCGGACATGGACGTGATGGACACAACTACGGAGGCGAGAGGTGCCCATCG
GTGCGCCGCCATTCCCGAAACCTCGTCGTCGCTCCTGCCC
back to top