mRNA_P-fluviatile_contig11.1252.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1252.1
Unique NamemRNA_P-fluviatile_contig11.1252.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig11.1252.1 vs. uniprot
Match: A0A6H5JXM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM3_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 4.550e-103
Identity = 242/477 (50.73%), Postives = 299/477 (62.68%), Query Frame = 1
Query:    1 MAVDFAKSQKAPELPIILGGDFMYAFKRFTDVYGGKSISQASLKALQVLPLVWSALSVKEAQKMSKADRNMAASRCMQEIAVPGLIMLLEGPSKRANERPRMPHKWKDRIYYTTLGTGGSNPKTFMEAPDTVMTKYKKIKELFTKCQLHM----QKTPAELPSGTQTEEVFEHLN------RDMYLDRRGRGERGRQSSADHLFNQHRRGLAATGTAATLPPPTPVSGPASRCEPVGAPAALXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------RSEGEVDVPDSWYYPLLMLAAAFSPWSGQCPSEWKHLASSSGPGSRKRKNNREGAVEVNDDDPISSPAAMGRLNPNGDAVSRRQHYAAIKREKESEKQAAIEKENKAARMEALDTRKKGLAVMEAASSHVESIGANLKRMVELQEQGAEATKRAAKITALEKKLMLRIGDEKEIRGELERLLDE 1326
            MAVDF KSQKAP LPI    DFM+A ++F   YG K+++Q +LK L  +PLV SAL+VKEA KMS A RN+AAS+CMQEIAVPG I L+E         P+MPHKWK  +YYTTLG+G S  KTFME P TV+TK+K  K  +T+  L +    + TP+ELPSGT T++  E LN       DMY   + R ++     AD L     RG A +  AA  P  +PV+G              XXXXXXXXXXXXXXXXXXXXXXXXXX                         + EGE +VP+ W +P L+L AA+SPWSG+ PSEWKHL SS GP S KRK    G V V+ ++P+ SPA M RLNPNGDA+SR     + +R K+   +   E      R EAL T+KKGLA +EAA++H+E+IGAN+KRMVEL+E  A   KR  KI ALEKK+MLR+GDE E R ELE LL+E
Sbjct:  105 MAVDFPKSQKAPMLPINRPEDFMFALRKFCGTYGNKTMTQPALKMLPSIPLVHSALAVKEADKMSAAQRNLAASKCMQEIAVPGFIKLIEHALSTMEGPPQMPHKWKVMVYYTTLGSGTSKAKTFMEKPSTVLTKFKSYKAKYTRVWLWLDTNDKNTPSELPSGTNTQDSLEELNDAMWFESDMYKRDKARSDKAGAEVADFLS----RGAAGSVDAAGSPAGSPVTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREQEREQDKGGDEGKHEGE-EVPEWWVFPFLLLTAAYSPWSGRAPSEWKHLDSSDGP-SIKRKG---GDVTVDSENPVCSPAVMSRLNPNGDALSR-----SSRRGKQRPTRNFQE-----TRKEALKTKKKGLAALEAANTHIETIGANMKRMVELKEAEAVGIKRENKIKALEKKIMLRLGDETENRAELEFLLNE 562          
BLAST of mRNA_P-fluviatile_contig11.1252.1 vs. uniprot
Match: D7FV02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV02_ECTSI)

HSP 1 Score: 318 bits (815), Expect = 6.270e-101
Identity = 203/470 (43.19%), Postives = 266/470 (56.60%), Query Frame = 1
Query:    1 MAVDFAKSQKAPELPIILGGDFMYAFKRFTDVYGGKSISQASLKALQVLPLVWSALSVKEAQKMSKADRNMAASRCMQEIAVPGLIMLLEGPSKRANERPRMPHKWKDRIYYTTLGTGGSNPKTFMEAPDTVMTKYKKIKELFTK-CQLHMQKTP---AELPSGTQTEEVFEHLNRDMYLDRRGRGERGRQSSADHLFNQHRR---GLAATGTAATLPPPTPVSGPASRCEPVG------------APAALXXXXXXXXXXXXXXXXXXXXXXXXXX-RSEGEVDVPDSWYYPLLMLAAAFSPWSGQCPSEWKHLASSSGPGSRKRK--------NNREGAVEVNDDDPISSPAAMGRLNPNGDAVSRRQHYAAIKREKESEKQAAIEKENKAARMEALDTRKKGLAVMEAASSHVESIGANLKRMVELQEQGAEATKRAAKITALEKKLMLRIGDEKEIRGELERLLDE 1326
            MA++F  S KAP L I L  D M+ F R+ D +GG+ ++QA LKALQ +P+  +AL+VK+ + M    RN A S+ MQEIAVPG I + E   K +      PH WKD +YYTTLGTG +  +TFM+ P  + TK+K +K  +TK  QL     P    EL SGTQT +  + L+ DMY            ++AD  FN  RR   G+  +G   T P PTP +                      +P AL                           R EG  D+PD +YYP L+LA  +S WSG  PSEWKHLA+SSGP +R  K        N+    V + DD+PI SP AMG +N NGDAVSRRQ++A IK+EKE  K+ A EKEN A R EALDTRK+GLA ME+A++HV  + +N+K+MV+LQE+   A +R  KI ALE+KLML I D   ++ +L  LLDE
Sbjct:    1 MAINFDISMKAPPLNIDLTEDMMWGFHRYCDKFGGRKMNQAGLKALQCVPIAHAALAVKQGEDMKSDVRNAAMSKRMQEIAVPGWIKVCEAAIKDSQGELVFPHGWKDALYYTTLGTGENPRQTFMKNPKALFTKFKALKTEYTKGAQLWFDTHPESSTELNSGTQTTDALDDLSADMYRKATKGNAAKEDAAADIFFNTPRRSAEGVVVSGVTTTSPLPTPAADAXXXXXXXXXXXXXXXXXXXTSPQALARRAAEALRREMASPTASGSGSGANLGRPEGNEDIPDDYYYPYLLLACPWSSWSGNTPSEWKHLAASSGPRNRASKGDKGNSNGNDNSNEVVITDDNPIGSPRAMGLMNANGDAVSRRQYFANIKKEKEQVKKDAKEKENVALRNEALDTRKRGLAAMESANTHVGELSSNIKKMVQLQEESNLAARRKDKIEALERKLMLAISDPNMVKAQLNALLDE 470          
BLAST of mRNA_P-fluviatile_contig11.1252.1 vs. uniprot
Match: A0A6H5K6E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6E0_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 4.550e-57
Identity = 109/178 (61.24%), Postives = 137/178 (76.97%), Query Frame = 1
Query:  793 DVPDSWYYPLLMLAAAFSPWSGQCPSEWKHLASSSGPGSRKRKNNREGAVEVNDDDPISSPAAMGRLNPNGDAVSRRQHYAAIKREKESEKQAAIEKENKAARMEALDTRKKGLAVMEAASSHVESIGANLKRMVELQEQGAEATKRAAKITALEKKLMLRIGDEKEIRGELERLLDE 1326
            +VP+ W +P L+L AA+SPWSG+ PSEWKHL SS GP S KRK    G V V+ ++P+ SPA M RLNPNGDA+SRRQH+AAIKREKE E++ A +K  + A  EAL+T+KKGLA +EAAS+H+E+IGAN+KRMVEL+E  A   KR  +I  LEKK+MLR+GDE E R ELE LL+E
Sbjct:   30 EVPEWWVFPFLLLTAAYSPWSGRAPSEWKHLDSSDGP-SIKRKG---GDVTVDSENPVCSPAVMSRLNPNGDALSRRQHFAAIKREKEQERKKAADKRLQEAWKEALETKKKGLAALEAASTHIETIGANMKRMVELKEAEAVGIKRKNRIKVLEKKVMLRLGDETENRAELEFLLNE 203          
BLAST of mRNA_P-fluviatile_contig11.1252.1 vs. uniprot
Match: A0A6H5JTM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM3_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 2.690e-53
Identity = 113/178 (63.48%), Postives = 136/178 (76.40%), Query Frame = 1
Query:  796 VPDSWYYPLLMLAAAFSPWSGQCPSEWKHLASSSGPGSRKRKNNREGA-VEVNDDDPISSPAAMGRLNPNGDAVSRRQHYAAIKREKESEKQAAIEKENKAARMEALDTRKKGLAVMEAASSHVESIGANLKRMVELQEQGAEATKRAAKITALEKKLMLRIGDEKEIRGELERLLDE 1326
            VP+ W +P L+L AA+SPWSGQ PSEWKHL SS GP S+KRK    GA V V+ ++P+ SPA M RLNPNGDA+SRRQH+AAIKREKE E +AA EKE + AR E L+T KKGLA  EAA++HVE+IGA++KRMVEL+E  A   KR  KI ALEKK++LR+GDE E R EL  LL E
Sbjct:  137 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGP-SKKRK----GADVTVDSENPVCSPAVMSRLNPNGDALSRRQHFAAIKREKEQEMKAAAEKELQEARKEPLET-KKGLAAFEAANTHVETIGADMKRMVELKEAEAVGIKRENKIKALEKKIVLRLGDETENRAELVFLLIE 308          
BLAST of mRNA_P-fluviatile_contig11.1252.1 vs. uniprot
Match: A0A6H5KJW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW8_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 3.000e-53
Identity = 109/179 (60.89%), Postives = 135/179 (75.42%), Query Frame = 1
Query:  793 DVPDSWYYPLLMLAAAFSPWSGQCPSEWKHLASSSGPGSRKRKNNREGAVEVNDDDPISSPAAMGRLNPNGDAVSRRQHYAAIKREKESEKQAAIEKENKAARMEALDTRKKGLAVMEAASSHVESIGANLKRMVELQEQGAEATKRAAKITALEKKLMLRIGDEKEIRGELERLLDEC 1329
            +VP+ W +P L+L AA+SPWSGQ PSEWKHL SS G  S+KR     G V V+ ++P+ SPA M RLNPNGDA+SRRQH+AAIKREKE E++AA +KE +     AL+T KKG A +EAA++HV+SIGAN+KRMVEL+E  A   KR  KI ALEK +MLR+GDE E R ELE LL+EC
Sbjct:  120 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGL-SKKRTG---GDVTVDSENPVYSPAVMSRLNPNGDALSRRQHFAAIKREKEEERKAAADKELQXXXXXALET-KKGPAALEAANTHVDSIGANMKRMVELKEAEAVGIKRENKIKALEKIIMLRLGDETENRAELEFLLNEC 293          
BLAST of mRNA_P-fluviatile_contig11.1252.1 vs. uniprot
Match: A0A6H5KFH5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFH5_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.050e-36
Identity = 71/118 (60.17%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    1 MAVDFAKSQKAPELPIILGGDFMYAFKRFTDVYGGKSISQASLKALQVLPLVWSALSVKEAQKMSKADRNMAASRCMQEIAVPGLIMLLEGPSKRANERPRMPHKWKDRIYYTTLGTG 354
            MAVDF KSQKAP LPI L  DFM+A ++F   YG K+++Q +LK LQ +PLV SAL+VKEA KMS A RN+AAS+CMQEIAVPG I L+E          +MPHKWK  +YYT+LG+G
Sbjct:    1 MAVDFPKSQKAPMLPINLSEDFMFALRKFCGTYGNKTMTQPALKMLQSIPLVHSALAVKEADKMSAAQRNLAASKCMQEIAVPGFIKLIEHALSIMGGPLQMPHKWKVMVYYTSLGSG 118          
BLAST of mRNA_P-fluviatile_contig11.1252.1 vs. uniprot
Match: A0A6H5KGF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF1_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 7.400e-36
Identity = 74/128 (57.81%), Postives = 99/128 (77.34%), Query Frame = 1
Query:  793 DVPDSWYYPLLMLAAAFSPWSGQCPSEWKHLASSSGPGSRKRKNNREGAVEVNDDDPISSPAAMGRLNPNGDAVSRRQHYAAIKREKESEKQAAIEKENKAARMEALDTRKKGLAVMEAASSHVESIG 1176
            +VP+ W +P L+L AA+SPWSGQ PSEWKHL SS GP S+KRK    G V V+ ++P+ SPA M RL+PNGDA+SRRQH+AAIKREKE E++A  +KE + +R E L+T+KKGLA +EAA+++  + G
Sbjct:  117 EVPEWWIFPFLLLTAAYSPWSGQAPSEWKHLDSSDGP-SKKRKG---GDVNVDSENPVCSPAVMSRLDPNGDALSRRQHFAAIKREKEQERKATADKELQESRKETLETKKKGLAALEAANTNYAASG 240          
BLAST of mRNA_P-fluviatile_contig11.1252.1 vs. uniprot
Match: A0A6H5K7S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7S4_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 1.130e-33
Identity = 89/188 (47.34%), Postives = 117/188 (62.23%), Query Frame = 1
Query:  793 DVPDSWYYPLLMLAAAFSPWSGQCPSEWKHLASSSGPGSRKRKNNREGAVEVNDDDPISSPAAMGRLNPNGDAVSRRQHYAAIKREKESEKQAAIEKENKAARMEALDTRK----------KGLAVMEAASSHVESIGANLKRMVELQEQGAEATKRAAKITALEKKLMLRIGDEKEIRGELERLLDE 1326
            +VP+ W +P L+L AA+SPWSGQ PSEWKHL SS GP S+KRK    G V V+ ++P+ SPA                           E++AA +KE + AR EAL+T+K          KGLA +EAA++H+E+IGAN+KRMVEL++  A   KR  KI ALEK++MLR+GDE E R ELE L +E
Sbjct:  105 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGP-SKKRKG---GDVTVDSENPVCSPA---------------------------ERKAATDKELQEARKEALETKKXXXXXXXXXKKGLAALEAANTHIETIGANMKRMVELKQAEAVGIKRENKIKALEKRIMLRLGDETENRAELEFLPNE 261          
BLAST of mRNA_P-fluviatile_contig11.1252.1 vs. uniprot
Match: A0A6H5KE63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE63_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.510e-29
Identity = 73/138 (52.90%), Postives = 94/138 (68.12%), Query Frame = 1
Query:  913 KRKNNREGAVEVNDDDPISSPAAMGRLNPNGDAVSRRQHYAAIKREKESEKQAAIEKENKAARMEALDTRKKGLAVMEAASSHVESIGANLKRMVELQEQGAEATKRAAKITALEKKLMLRIGDEKEIRGELERLLDE 1326
            +RK  + G V V+ ++P+ SPA M RLNPNGDA+SRRQH+AAIKRE+E E++AA +KE                   +AA++HVE+IGAN+KRMVEL+E  A   KR  KI ALEKK+ LR+GD  E R ELE LL+E
Sbjct:   45 RRKKRKGGDVTVDSENPVCSPAVMSRLNPNGDALSRRQHFAAIKREQEHERKAAADKE-------------------QAANTHVETIGANMKRMVELKEAEAVGIKRENKIKALEKKIRLRLGDGTENRAELEFLLNE 163          
BLAST of mRNA_P-fluviatile_contig11.1252.1 vs. uniprot
Match: A0A6H5JUT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT5_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 4.400e-27
Identity = 62/105 (59.05%), Postives = 76/105 (72.38%), Query Frame = 1
Query:    1 MAVDFAKSQKAPELPIILGGDFMYAFKRFTDVYGGKSISQASLKALQVLPLVWSALSVKEAQKMSKADRNMAASRCMQEIAVPGLIMLLEGPSKRANERPRMPHK 315
            MAVDFAKSQKAP LPI L  DFM+A ++F   YG K+++Q +LK LQ +P V SAL+VKEA KMS A RN+AAS+CMQEIAVPG   L+E      +   +MPHK
Sbjct:    1 MAVDFAKSQKAPMLPIDLSEDFMFALRKFCGTYGNKTMTQPALKMLQPIPRVHSALAVKEADKMSAAQRNLAASKCMQEIAVPG-FKLIEHALSTMDGPLQMPHK 104          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5JXM3_9PHAE4.550e-10350.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV02_ECTSI6.270e-10143.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6E0_9PHAE4.550e-5761.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTM3_9PHAE2.690e-5363.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJW8_9PHAE3.000e-5360.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFH5_9PHAE2.050e-3660.17Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGF1_9PHAE7.400e-3657.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7S4_9PHAE1.130e-3347.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE63_9PHAE2.510e-2952.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUT5_9PHAE4.400e-2759.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:2950793..2953366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1332
Cds size1332
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1252.1prot_P-fluviatile_contig11.1252.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 2950793..2953366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815474.0982313-CDS-P-fluviatile_contig11:2950792..29515941622815474.0982313-CDS-P-fluviatile_contig11:2950792..2951594Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2950793..2951594 -
1693561975.6192114-CDS-P-fluviatile_contig11:2950792..29515941693561975.6192114-CDS-P-fluviatile_contig11:2950792..2951594Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2950793..2951594 -
1622815474.1081073-CDS-P-fluviatile_contig11:2951686..29517611622815474.1081073-CDS-P-fluviatile_contig11:2951686..2951761Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2951687..2951761 -
1693561975.6326532-CDS-P-fluviatile_contig11:2951686..29517611693561975.6326532-CDS-P-fluviatile_contig11:2951686..2951761Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2951687..2951761 -
1622815474.1176314-CDS-P-fluviatile_contig11:2952350..29524531622815474.1176314-CDS-P-fluviatile_contig11:2952350..2952453Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2952351..2952453 -
1693561976.2351272-CDS-P-fluviatile_contig11:2952350..29524531693561976.2351272-CDS-P-fluviatile_contig11:2952350..2952453Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2952351..2952453 -
1622815474.1273744-CDS-P-fluviatile_contig11:2953014..29533661622815474.1273744-CDS-P-fluviatile_contig11:2953014..2953366Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2953015..2953366 -
1693561976.2507548-CDS-P-fluviatile_contig11:2953014..29533661693561976.2507548-CDS-P-fluviatile_contig11:2953014..2953366Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2953015..2953366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1252.1

>prot_P-fluviatile_contig11.1252.1 ID=prot_P-fluviatile_contig11.1252.1|Name=mRNA_P-fluviatile_contig11.1252.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=444bp
MAVDFAKSQKAPELPIILGGDFMYAFKRFTDVYGGKSISQASLKALQVLP
LVWSALSVKEAQKMSKADRNMAASRCMQEIAVPGLIMLLEGPSKRANERP
RMPHKWKDRIYYTTLGTGGSNPKTFMEAPDTVMTKYKKIKELFTKCQLHM
QKTPAELPSGTQTEEVFEHLNRDMYLDRRGRGERGRQSSADHLFNQHRRG
LAATGTAATLPPPTPVSGPASRCEPVGAPAALAVAAAAAIRQEQEAATGA
GAGAGSGGRSEGEVDVPDSWYYPLLMLAAAFSPWSGQCPSEWKHLASSSG
PGSRKRKNNREGAVEVNDDDPISSPAAMGRLNPNGDAVSRRQHYAAIKRE
KESEKQAAIEKENKAARMEALDTRKKGLAVMEAASSHVESIGANLKRMVE
LQEQGAEATKRAAKITALEKKLMLRIGDEKEIRGELERLLDEC*
back to top

mRNA from alignment at P-fluviatile_contig11:2950793..2953366-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1252.1 ID=mRNA_P-fluviatile_contig11.1252.1|Name=mRNA_P-fluviatile_contig11.1252.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2574bp|location=Sequence derived from alignment at P-fluviatile_contig11:2950793..2953366- (Porterinema fluviatile SAG_2381)
ATGGCAGTTGATTTCGCAAAGTCACAGAAGGCGCCGGAGCTCCCGATCAT CCTTGGCGGCGACTTCATGTACGCTTTCAAACGCTTCACAGACGTGTACG GTGGGAAGAGTATATCCCAGGCCTCGCTGAAGGCACTCCAGGTTCTGCCA CTCGTGTGGTCAGCTCTCTCCGTGAAGGAGGCGCAGAAGATGTCGAAGGC GGACCGCAACATGGCAGCATCGAGATGCATGCAAGAGATCGCGGTCCCCG GGCTCATCATGCTTCTGGAGGGGCCATCGAAGAGAGCGAACGAGCGGCCG CGAATGCCCCACAAGTGGAAGGACAGGATCTACTACACCACGCTCGGCAC AGGTAGGCCGCGCAAGAGTGCTTCGTATGGCGTGATGTTCGCTTTCCTCT CGTTTGCATCCCGCAAGCCTCTTTCGTGGGCGCCAGCCCTTACATGAAAA ACACATGATTGCGCTTTTTGAAATTTTGAGGTGAGTGCGTGAACCCAACG GCTGATGAGTTTTCGAAAAATGTACTTCGAAGTACATGTATGACACCTGT GTGTGAGCATAATAACGGCTGTTCAGTACCGCACTTACGTGGCGCCATGA CAATCAATGTCTTCTCCCACACATGGGGGAGCAGCAGAAAGAACGATAAC ATGCATGGATAGAAAGGAAAGGGACCGAATAGCCACCGGCAGTGCAGCGG ATTTTGAATTTGAAGCACCAGCACCAGCAGCACCAGCGGTTGCAACCGCA GGGGGACGGGAAGTACGAACATTTGCCGGCCATTGGTACCGTTGTAAGCT TCTCGCGCGGCCATGGGTCACCATCTATCCCTGCCGTTCGTAGTCGCAGC TCCCCGCTTGACTTGCTTTTCCCCTACACCTTCTGTAATTTTGGAACAAC CGACAACCGACAGGAGGGAGCAACCCGAAGACTTTCATGGAAGCCCCAGA CACCGTCATGACGAAGTACAAGAAGATAAAAGAACTGTTTACCAAGTGCC AGCTGCACATGCAGAAGTGAGTAAATCGCCTACATTGGTGCTGAGAGCGT TTTCTTGCCATGTATTTCACCGGCGCATCCTGCAGGGGGTGTGTCCTGTA CCGCGAGGGTTTACGCGATGTGTGTTTGTGGGGGGTTGGGTGCCCCTTGA TGCACACTCGTGGCTAAGGCGTGCTTGTTCCTCGTCTGACTAGCACCGAC CACTCACCCCGCACCCCCGATCTGTCGTGGCAGCGCTGGTACATGAAATA TTGAAACCTCTCGCACCGTTGCCGCTACTTCATAAAGGCAAAGTGTGGTC AAGCGTTGATGCAGGAGCGCGTTCCCTTGTTGCCTCCATCCACTACGCTT TTTGTCGCCCCAATACACAAAGTGTTGTTCATTGTTTGTCATATGTTTTG TGGTCTGCTTTTGGTTAAGACGTCCATGTGTAGACTGTACGCGAGGGCCA TGTACACTGTCGAGAAATATATTTCTTCGCTGCGTTTTGCCCCAAAAAAA ATGACACACAACACATGTTAAATAGCTTTGTTTTCACATTATTGCTCGTC TTTGTTGTACATACGCCCCTTGCCCCCTTTACTTTTGCGCAGGATCGCGC CGGAGAACCCCAGCAGAACTGCCGTCTGGGACGCAGACGGAGGAGGTCTT CGAGCACCTCAACAGGGACATGTACCTGGAGTCCTCGGGTTATCTTAAGC TGCTCGAAAAGGGCAAAGATCCGGACGCACCGCCGACCCTGACGGCGAAT GGCCCGCGCCTTGCGGCGCTAGCCGCCGGGGGAGGGGGGAAAGGGGGCGC CAATCCTCCGCTGACCACCTCTTCAACCAACACCGGCGTGGTCTTGCCGC TACCGGTACAGCGGCCACACTCCCGCCCCCGACACCTGTTTCGGGCCCGG CTTCGAGGTGTGAGCCGGTCGGGGCCCCCGCTGCTTTAGCCGTAGCGGCT GCCGCCGCGATCCGCCAAGAGCAGGAGGCGGCGACGGGGGCGGGGGCGGG CGCAGGCTCTGGCGGCAGGAGCGAAGGGGAGGTCGACGTGCCCGACAGCT GGTACTACCCTTTGCTGATGCTGGCAGCTGCATTCAGCCCGTGGAGTGGC CAGTGTCCCTCCGAATGGAAGCACCTCGCGTCCTCGAGCGGCCCCGGCAG CAGGAAGCGCAAGAACAACAGGGAAGGAGCGGTCGAAGTCAACGACGACG ACCCCATCAGCAGCCCGGCGGCGATGGGGCGGCTCAACCCCAACGGTGAC GCCGTGAGCCGCCGCCAGCACTACGCTGCCATCAAGCGGGAGAAAGAATC CGAAAAACAGGCGGCAATCGAAAAAGAGAACAAAGCGGCCAGGATGGAGG CGCTGGACACTCGGAAGAAAGGCCTGGCGGTGATGGAGGCAGCCAGCTCT CATGTGGAGAGCATCGGCGCCAACCTCAAGAGGATGGTGGAACTCCAGGA GCAAGGAGCTGAGGCCACGAAGCGCGCGGCGAAGATCACCGCTTTGGAAA AAAAACTGATGCTTCGTATCGGGGACGAGAAAGAGATCCGAGGTGAACTT GAACGCTTGCTTGACGAGTGCTAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig11:2950793..2953366-

>mRNA_P-fluviatile_contig11.1252.1 ID=mRNA_P-fluviatile_contig11.1252.1|Name=mRNA_P-fluviatile_contig11.1252.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2664bp|location=Sequence derived from alignment at P-fluviatile_contig11:2950793..2953366- (Porterinema fluviatile SAG_2381)
ATGGCAGTTGATTTCGCAAAGTCACAGAAGGCGCCGGAGCTCCCGATCAT
CCTTGGCGGCGACTTCATGTACGCTTTCAAACGCTTCACAGACGTGTACG
GTGGGAAGAGTATATCCCAGGCCTCGCTGAAGGCACTCCAGGTTCTGCCA
CTCGTGTGGTCAGCTCTCTCCGTGAAGGAGGCGCAGAAGATGTCGAAGGC
GGACCGCAACATGGCAGCATCGAGATGCATGCAAGAGATCGCGGTCCCCG
GGCTCATCATGCTTCTGGAGGGGCCATCGAAGAGAGCGAACGAGCGGCCG
CGAATGCCCCACAAGTGGAAGGACAGGATCTACTACACCACGCTCGGCAC
AGATGGCAGTTGATTTCGCAAAGTCACAGAAGGCGCCGGAGCTCCCGATC
ATCCTTGGCGGCGACTTCATGTACGCTTTCAAACGCTTCACAGACGTGTA
CGGTGGGAAGAGTATATCCCAGGCCTCGCTGAAGGCACTCCAGGTTCTGC
CACTCGTGTGGTCAGCTCTCTCCGTGAAGGAGGCGCAGAAGATGTCGAAG
GCGGACCGCAACATGGCAGCATCGAGATGCATGCAAGAGATCGCGGTCCC
CGGGCTCATCATGCTTCTGGAGGGGCCATCGAAGAGAGCGAACGAGCGGC
CGCGAATGCCCCACAAGTGGAAGGACAGGATCTACTACACCACGCTCGGC
ACAGGAGGGAGCAACCCGAAGACTTTCATGGAAGCCCCAGACACCGTCAT
GACGAAGTACAAGAAGATAAAAGAACTGTTTACCAAGTGCCAGCTGCACA
TGCAGAAGAGGGAGCAACCCGAAGACTTTCATGGAAGCCCCAGACACCGT
CATGACGAAGTACAAGAAGATAAAAGAACTGTTTACCAAGTGCCAGCTGC
ACATGCAGAAAACCCCAGCAGAACTGCCGTCTGGGACGCAGACGGAGGAG
GTCTTCGAGCACCTCAACAGGGACATGTACCTGGAAACCCCAGCAGAACT
GCCGTCTGGGACGCAGACGGAGGAGGTCTTCGAGCACCTCAACAGGGACA
TGTACCTGGACCGCCGGGGGAGGGGGGAAAGGGGGCGCCAATCCTCCGCT
GACCACCTCTTCAACCAACACCGGCGTGGTCTTGCCGCTACCGGTACAGC
GGCCACACTCCCGCCCCCGACACCTGTTTCGGGCCCGGCTTCGAGGTGTG
AGCCGGTCGGGGCCCCCGCTGCTTTAGCCGTAGCGGCTGCCGCCGCGATC
CGCCAAGAGCAGGAGGCGGCGACGGGGGCGGGGGCGGGCGCAGGCTCTGG
CGGCAGGAGCGAAGGGGAGGTCGACGTGCCCGACAGCTGGTACTACCCTT
TGCTGATGCTGGCAGCTGCATTCAGCCCGTGGAGTGGCCAGTGTCCCTCC
GAATGGAAGCACCTCGCGTCCTCGAGCGGCCCCGGCAGCAGGAAGCGCAA
GAACAACAGGGAAGGAGCGGTCGAAGTCAACGACGACGACCCCATCAGCA
GCCCGGCGGCGATGGGGCGGCTCAACCCCAACGGTGACGCCGTGAGCCGC
CGCCAGCACTACGCTGCCATCAAGCGGGAGAAAGAATCCGAAAAACAGGC
GGCAATCGAAAAAGAGAACAAAGCGGCCAGGATGGAGGCGCTGGACACTC
GGAAGAAAGGCCTGGCGGTGATGGAGGCAGCCAGCTCTCATGTGGAGAGC
ATCGGCGCCAACCTCAAGAGGATGGTGGAACTCCAGGAGCAAGGAGCTGA
GGCCACGAAGCGCGCGGCGAAGATCACCGCTTTGGAAAAAAAACTGATGC
TTCGTATCGGGGACGAGAAAGAGATCCGAGGTGAACTTGAACGCTTGCTT
GACGAGTGCTAGCCGCCGGGGGAGGGGGGAAAGGGGGCGCCAATCCTCCG
CTGACCACCTCTTCAACCAACACCGGCGTGGTCTTGCCGCTACCGGTACA
GCGGCCACACTCCCGCCCCCGACACCTGTTTCGGGCCCGGCTTCGAGGTG
TGAGCCGGTCGGGGCCCCCGCTGCTTTAGCCGTAGCGGCTGCCGCCGCGA
TCCGCCAAGAGCAGGAGGCGGCGACGGGGGCGGGGGCGGGCGCAGGCTCT
GGCGGCAGGAGCGAAGGGGAGGTCGACGTGCCCGACAGCTGGTACTACCC
TTTGCTGATGCTGGCAGCTGCATTCAGCCCGTGGAGTGGCCAGTGTCCCT
CCGAATGGAAGCACCTCGCGTCCTCGAGCGGCCCCGGCAGCAGGAAGCGC
AAGAACAACAGGGAAGGAGCGGTCGAAGTCAACGACGACGACCCCATCAG
CAGCCCGGCGGCGATGGGGCGGCTCAACCCCAACGGTGACGCCGTGAGCC
GCCGCCAGCACTACGCTGCCATCAAGCGGGAGAAAGAATCCGAAAAACAG
GCGGCAATCGAAAAAGAGAACAAAGCGGCCAGGATGGAGGCGCTGGACAC
TCGGAAGAAAGGCCTGGCGGTGATGGAGGCAGCCAGCTCTCATGTGGAGA
GCATCGGCGCCAACCTCAAGAGGATGGTGGAACTCCAGGAGCAAGGAGCT
GAGGCCACGAAGCGCGCGGCGAAGATCACCGCTTTGGAAAAAAAACTGAT
GCTTCGTATCGGGGACGAGAAAGAGATCCGAGGTGAACTTGAACGCTTGC
TTGACGAGTGCTAG
back to top