mRNA_P-fluviatile_contig11.1248.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1248.1
Unique NamemRNA_P-fluviatile_contig11.1248.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:2932074..2933084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size355
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1248.1prot_P-fluviatile_contig11.1248.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 2932109..2933004 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815427.0671306-UTR-P-fluviatile_contig11:2932073..29321081622815427.0671306-UTR-P-fluviatile_contig11:2932073..2932108Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2932074..2932108 -
1693561809.5228107-UTR-P-fluviatile_contig11:2932073..29321081693561809.5228107-UTR-P-fluviatile_contig11:2932073..2932108Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2932074..2932108 -
1622815427.0985396-UTR-P-fluviatile_contig11:2933004..29330841622815427.0985396-UTR-P-fluviatile_contig11:2933004..2933084Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2933005..2933084 -
1693561809.5524485-UTR-P-fluviatile_contig11:2933004..29330841693561809.5524485-UTR-P-fluviatile_contig11:2933004..2933084Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2933005..2933084 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815427.0782368-CDS-P-fluviatile_contig11:2932108..29321561622815427.0782368-CDS-P-fluviatile_contig11:2932108..2932156Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2932109..2932156 -
1693561809.53203-CDS-P-fluviatile_contig11:2932108..29321561693561809.53203-CDS-P-fluviatile_contig11:2932108..2932156Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2932109..2932156 -
1622815427.0877302-CDS-P-fluviatile_contig11:2932812..29330041622815427.0877302-CDS-P-fluviatile_contig11:2932812..2933004Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2932813..2933004 -
1693561809.5416481-CDS-P-fluviatile_contig11:2932812..29330041693561809.5416481-CDS-P-fluviatile_contig11:2932812..2933004Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2932813..2933004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1248.1

>prot_P-fluviatile_contig11.1248.1 ID=prot_P-fluviatile_contig11.1248.1|Name=mRNA_P-fluviatile_contig11.1248.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=80bp
MERTGTSNKGQVGLHASVLLVMAMRGHSQSAPAARWRICFYVEERPREAS
VQAHESRKRGRPATLGYLRQQVRWKVSAQ*
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mRNA from alignment at P-fluviatile_contig11:2932074..2933084-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1248.1 ID=mRNA_P-fluviatile_contig11.1248.1|Name=mRNA_P-fluviatile_contig11.1248.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1011bp|location=Sequence derived from alignment at P-fluviatile_contig11:2932074..2933084- (Porterinema fluviatile SAG_2381)
TCGTCGTGGTTGATCGAGATTGCTGCTTCTTTTGAGGATGATTCGGTCTC
CACCTGGCTGCTGCCCGCAGCAGTTCTAGCATGGAGAGGACGGGCACATC
GAACAAAGGCCAAGTCGGCTTGCACGCTTCCGTCCTGCTTGTAATGGCGA
TGCGAGGACACAGCCAGTCTGCACCCGCCGCGCGCTGGAGGATATGCTTT
TACGTCGAGGAACGGCCCAGAGAAGCATCGGTACAAGCCCATGAAAGCAG
GAAACGTGGACGGCCTGCTACGGTAGGCGCTGCTGTGGCGTGATTCTGAT
CTTGTGGGAGGAAAATTACGGGACGTGCTTGCACTTGACTTCTTCCTTTC
AAAAGGCGGTCGGTCGAACCGGCGTGTTGACTTTGTTTTTCGCCGAGCAC
ATCTTCTCATGCGAGGTGGGGCTGGCTGTCAAGCCAGGTGCAACCGTCGC
TGATTGTGTCGTCTCTTACCGGCCATATTCTCATCGTCCGAAAAATGTCG
CGCGATTTGTCAATCCTTCACCCCCCCTCCCCCCGTGCCGTTTAGCTAAA
CACTTCCATCTTTTCCTTGGCACTGACACTTGAGGTGTCCTTGCCGAGCA
AGACTCCACATACCTCGCCGTGGGACGAACGATAACGCCGGTGTTGCGCC
GATCACCGAGACGGGAGAGAGCCGCTTGGGCACAGACGCACATAATCAAG
AAGACAAGATCAATGGTTGTCGCCCGGCTTGGAAGCATGTCTTCTCGTGC
CGAGAAAGCGCCGACCGCACGCTGCGCGCTAGAGTCTCGACGTCCGCAAG
GCGGTCGGTGTTGTCACGTCTCCACGCTCAACACAAATACACGAAAGGGC
ACACGGATCGTAATCTAGCATGTCCTTCCACCCCCCACTCCTCCCCGTCC
CCCATCTTTCTTCGTGCCCTTCCCCCAGCTTGGATATCTCAGGCAGCAAG
TACGATGGAAAGTCAGCGCACAGTGACGTCATCATACCCCAAGAACAGGT
GCCCTTGCTTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:2932074..2933084-

>mRNA_P-fluviatile_contig11.1248.1 ID=mRNA_P-fluviatile_contig11.1248.1|Name=mRNA_P-fluviatile_contig11.1248.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=480bp|location=Sequence derived from alignment at P-fluviatile_contig11:2932074..2933084- (Porterinema fluviatile SAG_2381)
ATGGAGAGGACGGGCACATCGAACAAAGGCCAAGTCGGCTTGCACGCTTC
CGTCCTGCTTGTAATGGCGATGCGAGGACACAGCCAGTCTGCACCCGCCG
CGCGCTGGAGGATATGCTTTTACGTCGAGGAACGGCCCAGAGAAGCATCG
GTACAAGCCCATGAAAGCAGGAAACGTGGACGGCCTGCTACGATGGAGAG
GACGGGCACATCGAACAAAGGCCAAGTCGGCTTGCACGCTTCCGTCCTGC
TTGTAATGGCGATGCGAGGACACAGCCAGTCTGCACCCGCCGCGCGCTGG
AGGATATGCTTTTACGTCGAGGAACGGCCCAGAGAAGCATCGGTACAAGC
CCATGAAAGCAGGAAACGTGGACGGCCTGCTACGCTTGGATATCTCAGGC
AGCAAGTACGATGGAAAGTCAGCGCACAGTGACTTGGATATCTCAGGCAG
CAAGTACGATGGAAAGTCAGCGCACAGTGA
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