mRNA_P-fluviatile_contig11.1244.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1244.1
Unique NamemRNA_P-fluviatile_contig11.1244.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig11.1244.1 vs. uniprot
Match: D8LKH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH4_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 4.200e-95
Identity = 132/160 (82.50%), Postives = 148/160 (92.50%), Query Frame = 1
Query:    1 REKLKLIQAYITSLEYNYTGEEYFVKKMDRGYRHVTSTAKLIIREALPIQCVEAVFLGLYLTADMSEVDRFPVCFRSSLDGRVYRHIILAVRSGNVWGALGLSRRDTLMYKELKYELFSRLMGDFRDSYAGCWHRLDHIWVGFPMPHDISSNVPVKWKVM 480
            R KLK IQ+YITSLEYNYTGE +FVKK DRG+RHVTSTAKLIIREALPIQCVEAVF+G YLTADM+EVDRFPVCFRSSLDGRVYRHI+LAVRSG  WG+LGLSRRD LMYKELKY+LFS+L+GDFR+SYA  WHRL+ +WVGFP+PHDISSNV +KWKV+
Sbjct:    2 RGKLKHIQSYITSLEYNYTGEAFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAEVDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDKLMYKELKYDLFSKLVGDFRESYASSWHRLEQVWVGFPLPHDISSNVAIKWKVL 161          
BLAST of mRNA_P-fluviatile_contig11.1244.1 vs. uniprot
Match: A0A6H5JJ50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ50_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 7.770e-81
Identity = 122/175 (69.71%), Postives = 135/175 (77.14%), Query Frame = 1
Query:   46 YNYTGEEYFVKKMDRGYRHVTSTAKLIIREALPIQCVEAVFLGLYLTADMSE------------------------------VDRFPVCFRSSLDGRVYRHIILAVRSGNVWGALGLSRRDTLMYKELKYELFSRLMGDFRDSYAGCWHRLDHIWVGFPMPHDISSNVPVKWKVM 480
            YNYTGE +FVKK DRG+RHVTSTAK IIREALPIQCVEAVF+G YLTADM+E                              VDRFPVCFRSSLDGRVYRHI+LAVRSG  WG+LGLSRRDTLMYKELKYELFS+L+GDFR+SYA  WHRL+ +WVGFP+PHDISSNV VKWKV+
Sbjct:    5 YNYTGEAFFVKKKDRGFRHVTSTAKQIIREALPIQCVEAVFVGAYLTADMAEAGPLFFQTLADSSTLSPYLRRFLLPGYMVGVDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDTLMYKELKYELFSKLVGDFRESYASNWHRLEQVWVGFPLPHDISSNVAVKWKVL 179          
BLAST of mRNA_P-fluviatile_contig11.1244.1 vs. uniprot
Match: A0A835YRP7_9STRA (Vasohibin-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRP7_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.490e-58
Identity = 86/159 (54.09%), Postives = 117/159 (73.58%), Query Frame = 1
Query:    1 REKLKLIQAYITSLEYNYTGEEYFVKKMDRGYRHVTSTAKLIIREALPIQCVEAVFLGLYLTADMSEVDRFPVCFRSSLDGRVYRHIILAVRSGNVWGALGLSRRDTLMYKELKYELFSRLMGDFRDSYAGCWHRLDHIWVGFPMPHDISSNVPVKWKV 477
            R+KLK +Q YI + EYN+TG+ Y+  K  RG+ HV + A+ I+REALPIQCVEA FLG YLT D+ +V+R+P+ F+S+L+G  +RHI+LAV SG  WGALG+SRRD L YKELKY     L+ +F  +Y  CWH+L  I++G P+P + S N P++WKV
Sbjct:   32 RDKLKQLQKYIEAFEYNHTGKCYYSTKKFRGFAHVANVAQDIMREALPIQCVEATFLGAYLTCDLRDVERYPLSFKSALEGHEHRHIVLAVTSGGKWGALGISRRDCLAYKELKYSSLGALVAEFAAAYTSCWHQLQAIYLGLPLPRNPSCNAPIRWKV 190          
BLAST of mRNA_P-fluviatile_contig11.1244.1 vs. uniprot
Match: K3X8V2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8V2_GLOUD)

HSP 1 Score: 176 bits (447), Expect = 6.590e-51
Identity = 94/194 (48.45%), Postives = 123/194 (63.40%), Query Frame = 1
Query:   19 IQAYITSLEYNYTGEEYFVKKMDRGYRHVTSTAKLIIREALPIQCVEAVFLGLYLTADMSEVDRFPVCFRSSLDGRVYRHIILAVR-SGNVWGALGLSRRDTLMYKELKYELFSRLMGDFRDSYAGCWHRLDHIWVGFPMPHDISSNVPVKWKVMRADVGTESEWLSAAPKLDSFVACANSLSECFSITGKIPD 597
            IQ  I +LEYNYTG +YF    +R ++ + STAK I+ E LPIQC+EAVFL  YLTA+ S+++RFP+ F+S     V+RHIILAVR   N WGALGLSR D LMYKELKY   S L+ DF   +   +HR+  ++VGFP  HDI S+  V+W+VM   +   +EW  AA   DSF   A  +       G +P+
Sbjct:   46 IQHVINTLEYNYTGTQYFDVNKNRSFKSIVSTAKDIVNETLPIQCLEAVFLASYLTANASDLERFPISFKSIAGTNVHRHIILAVRYQHNKWGALGLSRSDKLMYKELKYASLSELIQDFCHEFELLYHRVLKVYVGFPFSHDIHSSEKVEWRVMNISLEF-NEWTDAAQHFDSFAKDAVDILAYKKSKGVLPE 238          
BLAST of mRNA_P-fluviatile_contig11.1244.1 vs. uniprot
Match: A0A1W0A7K4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7K4_9STRA)

HSP 1 Score: 175 bits (443), Expect = 3.780e-49
Identity = 90/209 (43.06%), Postives = 128/209 (61.24%), Query Frame = 1
Query:    1 REKLKLIQAYITSLEYNYTGEEYFVKKMDRGYRHVTSTAKLIIREALPIQCVEAVFLGLYLTADMS----------EVDRFPVCFRSSLDGRVYRHIILAVRSGNVWGALGLSRRDTLMYKELKYELFSRLMGDFRDSYAGCWHRLDHIWVGFPMPHDISSNVPVKWKVMRADVGTESEWLSAAPKLDSFVACANSLSECFSITGKIPD 597
            R KL  IQ Y+ +LEYNYTG+ YF     R Y+ +  TAK II E+LPIQC+EAVF+  YLTA+ +          +VDR P+ F+S   G V+RHI+L ++  ++WGALGLSR   LM KELKY+ FS L+ D+ + +A C H +  I+VGFP  HDI S+  V+W+V+   + ++  W + A + D F    + L       G++PD
Sbjct:   39 RSKLHAIQTYLNALEYNYTGKLYFNVNKHRSYKSIYGTAKEIIHESLPIQCLEAVFVAAYLTANGNTEYEGMNPNQQVDRVPISFKSRSGGTVFRHIVLGIKHQHMWGALGLSRNADLMNKELKYKNFSELLADYIEHFAKCCHEVTKIYVGFPFSHDIHSSEKVQWRVLNIKI-SDHPWDAVAAQFDLFTREHSELMSHLHRVGELPD 246          
BLAST of mRNA_P-fluviatile_contig11.1244.1 vs. uniprot
Match: A0A1V9ZEI7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZEI7_9STRA)

HSP 1 Score: 175 bits (443), Expect = 4.100e-49
Identity = 89/207 (43.00%), Postives = 127/207 (61.35%), Query Frame = 1
Query:    7 KLKLIQAYITSLEYNYTGEEYFVKKMDRGYRHVTSTAKLIIREALPIQCVEAVFLGLYLTAD----------MSEVDRFPVCFRSSLDGRVYRHIILAVRSGNVWGALGLSRRDTLMYKELKYELFSRLMGDFRDSYAGCWHRLDHIWVGFPMPHDISSNVPVKWKVMRADVGTESEWLSAAPKLDSFVACANSLSECFSITGKIPD 597
            KL  IQAY+++LEYNYTG  YF    +R Y+ +  TAK II EALPIQC+EAVF+  YLTA             ++DR P+ F+S      +RHI+L VR  +VWGALGLSR   LM K+LKY+ FS L+ D+ +++  C H++  ++VGFP  HDI S+  V+W+V+   +  E  W + A ++D F   ++ L       G++PD
Sbjct:   43 KLHAIQAYLSALEYNYTGRLYFNVNKNRSYKSIYGTAKEIISEALPIQCLEAVFVAAYLTAHGMPEYEGLNPSQQIDRVPISFKSRSGDSTFRHIVLGVRHQHVWGALGLSRSPALMNKDLKYKSFSDLVADYIENFVKCQHQVTKVYVGFPFSHDIHSSEKVQWRVLNIKI-VEHPWEAVAAQIDLFTRESSELMSHLHRVGELPD 248          
BLAST of mRNA_P-fluviatile_contig11.1244.1 vs. uniprot
Match: A0A2D4BXV4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXV4_PYTIN)

HSP 1 Score: 173 bits (439), Expect = 7.420e-49
Identity = 89/197 (45.18%), Postives = 119/197 (60.41%), Query Frame = 1
Query:    7 KLKLIQAYITSLEYNYTGEEYFVKKMDRGYRHVTSTAKLIIREALPIQCVEAVFLGLYLTADMSEVDRFPVCFRSSLDGRVYRHIILAVRSGNVWGALGLSRRDTLMYKELKYELFSRLMGDFRDSYAGCWHRLDHIWVGFPMPHDISSNVPVKWKVMRADVGTESEWLSAAPKLDSFVACANSLSECFSITGKIPD 597
            +L  +Q Y+ SLEYNYTG  YF    +R ++ + +TAK I  E LPIQC+EAVFL  Y+TA+  +++RFP+ F+S     V+RHI+LAVR  N WGALGLSR + LMYKEL++   S L  DF   +    H +  + VGFP PHDI S+  V+W+V+   V T  EW   A  LD+    A  L       G +PD
Sbjct:   45 RLMAVQNYLNSLEYNYTGTLYFDVNKNRSFKSIVNTAKEIAAEMLPIQCLEAVFLAAYITANFPDLERFPLSFKSQAGNSVHRHIVLAVRHQNKWGALGLSRSERLMYKELRFNSLSELTQDFCHGFESVCHVVTKLHVGFPFPHDIHSSEKVEWRVLNVPVDTV-EWSHVATHLDAXAKEAGDLLAFRRAKGAMPD 240          
BLAST of mRNA_P-fluviatile_contig11.1244.1 vs. uniprot
Match: A0A067CTS0_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CTS0_SAPPC)

HSP 1 Score: 170 bits (431), Expect = 2.140e-47
Identity = 84/207 (40.58%), Postives = 130/207 (62.80%), Query Frame = 1
Query:    7 KLKLIQAYITSLEYNYTGEEYFVKKMDRGYRHVTSTAKLIIREALPIQCVEAVFLGLYLTAD----------MSEVDRFPVCFRSSLDGRVYRHIILAVRSGNVWGALGLSRRDTLMYKELKYELFSRLMGDFRDSYAGCWHRLDHIWVGFPMPHDISSNVPVKWKVMRADVGTESEWLSAAPKLDSFVACANSLSECFSITGKIPD 597
            KL  +Q Y+ +LEYNYTG+ YF     R Y+ +  TAK I+ EALPIQC+EAVF+  YLTA             +++R P+ F+S+  G V+RHI+L V+  ++WGALGLSR  +LM K+LKY+ FS L+ D+ ++++ C H +  I+VGFP  HDI S+  V+W+V+   + +E  W + A + D F+  ++ +       G++P+
Sbjct:   39 KLHAVQTYLNALEYNYTGKLYFNVNKHRSYKSIYGTAKEIMAEALPIQCLEAVFVAAYLTAHGMPEYEGMNPSHQIERVPISFKSTSGGSVFRHIVLGVKHQHLWGALGLSRNPSLMNKDLKYKHFSELLADYVENFSKCHHTVTKIYVGFPFSHDIHSSEKVQWRVLNIKI-SEHPWDAVAGQFDLFLRESSEIMSHLHRVGELPE 244          
BLAST of mRNA_P-fluviatile_contig11.1244.1 vs. uniprot
Match: A0A5D6XNG0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNG0_9STRA)

HSP 1 Score: 171 bits (433), Expect = 2.320e-47
Identity = 97/217 (44.70%), Postives = 130/217 (59.91%), Query Frame = 1
Query:    7 KLKLIQAYITSLEYNYTGEEYFVKKMDRGYRHVTSTAKLIIREALPIQCVEAVFLGLYLTADMSEVDRFPVCFRSSLDGRVYRHIILAVRSGNV-WGALGLSRRDTLMYKELKYELFSRLMGDFRDSYAGCWHRLDHIWVGFPMPHDISSNVPVKWKVMRADVGTESEWLSAAPKLDSFVACANSLSECFSITGKIPDH-----PLVANNTEDGPSS 639
            +L  IQ  I++LEYNYTG  YF    +R ++ + STAK I+ E LPIQC+EAVFLG YLTA   E++RFP+ F++   G V+RHI+LAVR  +  WGALGLSR + LM KELKY   S L+ DF   +A  +H +  ++ GFP  HDI S+  V+W+VM   +   + W  AA  LD+F   A  +       G++PD      PL    TE G  S
Sbjct:   42 RLAAIQHVISTLEYNYTGTLYFDVTKNRSFKSIVSTAKDILNEVLPIQCLEAVFLGAYLTASAPELERFPISFKTVAGGCVHRHIVLAVRHQHAKWGALGLSRSEKLMAKELKYASLSELVQDFCREFALLFHAVLKVYAGFPFSHDIHSSEKVEWRVMNLPL-EHATWADAAQHLDAFSKEALDILAFKRAKGELPDSFALKFPLHVPETEPGKKS 257          
BLAST of mRNA_P-fluviatile_contig11.1244.1 vs. uniprot
Match: W2PGW7_PHYPN (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2PGW7_PHYPN)

HSP 1 Score: 166 bits (420), Expect = 1.670e-45
Identity = 87/197 (44.16%), Postives = 122/197 (61.93%), Query Frame = 1
Query:    7 KLKLIQAYITSLEYNYTGEEYFVKKMDRGYRHVTSTAKLIIREALPIQCVEAVFLGLYLTADMSEVDRFPVCFRSSLDGRVYRHIILAVR-SGNVWGALGLSRRDTLMYKELKYELFSRLMGDFRDSYAGCWHRLDHIWVGFPMPHDISSNVPVKWKVMRADVGTESEWLSAAPKLDSFVACANSLSECFSITGKIP 594
            KL+ IQ+ ITSLEYNYTG  YF    +R ++ + +TAK I++E LPIQC+E VFLG YLTA MS ++RFP+ F+++     +RH+IL +      WGALGLSR D LMYK+LK+E  S L+ D+   +   +H++  + VGFP  HDI S+  V+W+V+   V   S W   A +LD F   A  +       G+ P
Sbjct:   64 KLQSIQSLITSLEYNYTGTLYFDVNKNRSFKSIVNTAKEILKEGLPIQCLEGVFLGAYLTAGMSNLERFPISFKTAAGKSTHRHVILGIHHQQQKWGALGLSRCDKLMYKDLKFESLSDLVLDYCREFENVYHKVLKVNVGFPFTHDIHSSERVEWRVLNLPVDM-SNWAEIAKQLDGFGKDAAEIEIFKKAKGEFP 259          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKH4_ECTSI4.200e-9582.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ50_9PHAE7.770e-8169.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YRP7_9STRA1.490e-5854.09Vasohibin-domain-containing protein n=1 Tax=Tribon... [more]
K3X8V2_GLOUD6.590e-5148.45Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1W0A7K4_9STRA3.780e-4943.06Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1V9ZEI7_9STRA4.100e-4943.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A2D4BXV4_PYTIN7.420e-4945.18Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A067CTS0_SAPPC2.140e-4740.58Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A5D6XNG0_9STRA2.320e-4744.70Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
W2PGW7_PHYPN1.670e-4544.16Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:2898803..2901395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score285.4
Seed ortholog evalue2.2e-74
Seed eggNOG ortholog2880.D8LKH4
Preferred nameVASH1
GOsGO:0000003,GO:0000768,GO:0001525,GO:0001568,GO:0001701,GO:0001890,GO:0001892,GO:0001936,GO:0001937,GO:0001938,GO:0001944,GO:0003006,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006949,GO:0006950,GO:0007275,GO:0008150,GO:0008284,GO:0008285,GO:0009611,GO:0009653,GO:0009790,GO:0009792,GO:0009893,GO:0009987,GO:0010468,GO:0010594,GO:0010596,GO:0010604,GO:0010628,GO:0010632,GO:0010633,GO:0012505,GO:0016043,GO:0016525,GO:0019222,GO:0022414,GO:0022603,GO:0030334,GO:0030336,GO:0032501,GO:0032502,GO:0032879,GO:0035239,GO:0035295,GO:0040012,GO:0040013,GO:0042127,GO:0043009,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043535,GO:0043537,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045026,GO:0045177,GO:0045765,GO:0045766,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0050678,GO:0050679,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051094,GO:0051239,GO:0051240,GO:0051241,GO:0051270,GO:0051271,GO:0060255,GO:0060674,GO:0060711,GO:0060716,GO:0061024,GO:0061025,GO:0061458,GO:0065007,GO:0071840,GO:0072358,GO:0072359,GO:0080134,GO:0080135,GO:0090342,GO:1901342,GO:1901343,GO:1901490,GO:1901491,GO:1904018,GO:2000026,GO:2000145,GO:2000146,GO:2000181,GO:2000772
EggNOG free text desc.negative regulation of lymphangiogenesis
EggNOG OGs2BW4P@1,2QPPX@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVasohibin
Ec32 orthologEc-16_002970.1
Exons5
Model size639
Cds size639
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1244.1prot_P-fluviatile_contig11.1244.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 2898803..2901395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815473.0026543-CDS-P-fluviatile_contig11:2898802..28988461622815473.0026543-CDS-P-fluviatile_contig11:2898802..2898846Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2898803..2898846 +
1693561965.6363013-CDS-P-fluviatile_contig11:2898802..28988461693561965.6363013-CDS-P-fluviatile_contig11:2898802..2898846Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2898803..2898846 +
1622815473.0132234-CDS-P-fluviatile_contig11:2899220..28993771622815473.0132234-CDS-P-fluviatile_contig11:2899220..2899377Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2899221..2899377 +
1693561965.6516654-CDS-P-fluviatile_contig11:2899220..28993771693561965.6516654-CDS-P-fluviatile_contig11:2899220..2899377Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2899221..2899377 +
1622815473.0263352-CDS-P-fluviatile_contig11:2899808..28999481622815473.0263352-CDS-P-fluviatile_contig11:2899808..2899948Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2899809..2899948 +
1693561965.6633205-CDS-P-fluviatile_contig11:2899808..28999481693561965.6633205-CDS-P-fluviatile_contig11:2899808..2899948Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2899809..2899948 +
1622815473.037888-CDS-P-fluviatile_contig11:2900686..29008191622815473.037888-CDS-P-fluviatile_contig11:2900686..2900819Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2900687..2900819 +
1693561965.672405-CDS-P-fluviatile_contig11:2900686..29008191693561965.672405-CDS-P-fluviatile_contig11:2900686..2900819Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2900687..2900819 +
1622815473.0503507-CDS-P-fluviatile_contig11:2901230..29013951622815473.0503507-CDS-P-fluviatile_contig11:2901230..2901395Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2901231..2901395 +
1693561966.0793824-CDS-P-fluviatile_contig11:2901230..29013951693561966.0793824-CDS-P-fluviatile_contig11:2901230..2901395Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2901231..2901395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1244.1

>prot_P-fluviatile_contig11.1244.1 ID=prot_P-fluviatile_contig11.1244.1|Name=mRNA_P-fluviatile_contig11.1244.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=213bp
REKLKLIQAYITSLEYNYTGEEYFVKKMDRGYRHVTSTAKLIIREALPIQ
CVEAVFLGLYLTADMSEVDRFPVCFRSSLDGRVYRHIILAVRSGNVWGAL
GLSRRDTLMYKELKYELFSRLMGDFRDSYAGCWHRLDHIWVGFPMPHDIS
SNVPVKWKVMRADVGTESEWLSAAPKLDSFVACANSLSECFSITGKIPDH
PLVANNTEDGPSS
back to top

mRNA from alignment at P-fluviatile_contig11:2898803..2901395+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1244.1 ID=mRNA_P-fluviatile_contig11.1244.1|Name=mRNA_P-fluviatile_contig11.1244.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2593bp|location=Sequence derived from alignment at P-fluviatile_contig11:2898803..2901395+ (Porterinema fluviatile SAG_2381)
CGGGAGAAGCTCAAGCTCATCCAAGCGTACATCACCTCGCTCGAGTGAGC ACGCGTCGCACCCCCGGGTCGTTGATCATAGCAACGCGAAACATTGCTTA CATCTTCCTAATGCGTGCTCTATGGTACGCCTATTTCAGACGATGGATTA TCTGCTTTAGTTCCCTTCAAGAATCGCTTGATGTCGAAAAATGGGTGTCG CTGGCAAATTGTGTTGGTGGGGCAGCGTACTGCAGTTTGCGTTGACTGCG GCAGTGTTCCGTGCGAAAGTGATTTTTCCTCGAAGCTGCACAGCGATTCG TGACGAAATAATGCAATGTCGTTACATTTTTGAATGATTTTTTTAATGTC GGCGAGGTGCATCTGACAAAGCCTTGATCGACTTCGCACAATTTGCTCGG CTGCTAATAACTCGCCAGGTACAACTACACCGGCGAGGAATACTTCGTAA AAAAAATGGATCGAGGTTATCGGCATGTGACTTCGACAGCAAAGCTCATC ATCCGCGAGGCATTGCCGATTCAATGCGTAGAAGCCGTGTTTTTGGGGTT GTATCTCACCGCGGATATGAGTGAGGTATTGGATATGAACAAAATTTGCT GCCAATGTCGGCCGCCCACGGCAAAATGCCATTCAGGGGATGAACGACAC CCTTGTGACATGCGAATATCGCGCAACAGCTACCTGCAGTCAAATTTCCA CCTGCCCAAAATGTTTTATATCTCAGAGTAAGAGGCGGGTTCAGATTGTT TTTTCCAAATAGCGAAGTCCTCTTAGCAGAGTTCATTCCAACAAACGTAA TGTGTCGATACCAGCAGCATTCGCACGCACCTACATGTGCAAAGTAGAAC AGACAGCAGCAGCAACAGGGTAATCATTTCTGTTGGAGTCGTATCAAACG TCTGCTGGTGGTCCATTCCTTCTATCTAGTGCCCCATTTACCCAGCATCG ACATGTTTCGGTTTCTCGCTGTCTCATTGCCTCTCTCCGTTTCTCGTGCG GCGGAGGTGGATCGCTTTCCGGTGTGCTTTCGTTCTTCTTTGGATGGGCG AGTGTACAGGCATATAATTCTGGCCGTGCGTAGCGGGAATGTTTGGGGAG CCTTGGGCCTAAGCCGCCGCGACACGTTGATGTACAAGGAGCTCAAGTGA GTTTTGTCCCCGTCCAAATCATTACTCCAGGGAACGGGTCCGACACTTCC TCATCTCAAGTATTTTGTCTTCGGGTGTTGAGAGTGTGAACAATATTGCG TGCCACTATCTTTCATGTGACCTTCCCGAGCTCAAACCCCCGCACACTTC CTCCGCATCATACGAAAATGGAATGGTCTCCAAAGGTAGCTGTCCACCTG CGCTCGTGTGTATCAAGCTGAGATGAACGACCACTTCTTGAATTGTTTCA CTCCTCTTCCTGGGTACTCACGGCTGAGTGGTTTGAATCGTCGCGATTAG CAAATGGGTTCAGATTTTGTCACAAGGCTAATTTCAAATGCGCACACTTC ACTAGTTTACCCGCAATAAGACAAATTAGGGGCATGCCCTGCGTCTACTG CTTGCGAGAGCGTTTTGTAGCAATTTAGGGCTGTTGGTGGTGGTAATTAG TGTGGCATCCTCCTCAACCCTTGCGTCAACACAATACCGGTTTAGCATTC CATTCAAATTGTATTCCCTCTGCAATTCCACAAACAAGCAGTCGTGCGTG ATCGCGCAAGAGTTCCAAGGGCTTCGAGCTTGTCCGCACGGAAAGCTTTC AGCTGCTTACTTTTGCAACGTTGAAGATGGCAAAGTGACCTCTCCGCCAT TTCTCTCTCTTCCTTTTGAATCATCGTACAAATTCCTTCCTTGCGGCCTA TACTGAACCATTTCCGAATCCTGCTTCACACAAGGTATGAGCTATTTTCC AGGCTGATGGGCGACTTCAGGGACTCATACGCCGGTTGTTGGCACCGTCT TGATCATATCTGGGTCGGATTCCCTATGCCTCACGATATATCTTCCAATG TGCCCGTGAAGTGGAAGGTAGGTTCTCAAGAAAGACTTCTTGGATAGACT TTGTCCACAGCTGCACACCAAAAGTTCATCGAATCAGTGTATGTGGAACG TAGAAACTGGACCATACTAGCACGTATAGTGGGCGGATGCGTGCGCCCAG AATTGAGCATTTCTCTCACTGTTCGTTGTGCGCATGTCTGTATTTGCTGT TAAAGGATGTGAAGTACATGTGCGGAGTTATGTACTTGTGATTCCAAGTA CTACAGAGGCATCGATTTTGACAATGCGTTTATGGAGCGAACGCACTTTT CTACACTCGACAGAAGGCTGAGGCTCCCACGAAACCACACATGGGTCGGG GCCACTTCTTAACAAGCCCCGTGCCATCCGCGCATGCAGCACGCCAGGCA ACCCAATAATTGCCGACTTCACAACCAGGTGATGCGAGCCGATGTCGGGA CGGAATCGGAATGGCTGAGCGCCGCTCCGAAGCTCGACAGCTTCGTCGCT TGCGCCAACAGCCTTTCTGAATGCTTTTCCATTACCGGAAAGATTCCAGA CCATCCGCTGGTCGCCAACAACACCGAGGACGGTCCATCATCA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig11:2898803..2901395+

>mRNA_P-fluviatile_contig11.1244.1 ID=mRNA_P-fluviatile_contig11.1244.1|Name=mRNA_P-fluviatile_contig11.1244.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1278bp|location=Sequence derived from alignment at P-fluviatile_contig11:2898803..2901395+ (Porterinema fluviatile SAG_2381)
CGGGAGAAGCTCAAGCTCATCCAAGCGTACATCACCTCGCTCGACGGGAG
AAGCTCAAGCTCATCCAAGCGTACATCACCTCGCTCGAGTACAACTACAC
CGGCGAGGAATACTTCGTAAAAAAAATGGATCGAGGTTATCGGCATGTGA
CTTCGACAGCAAAGCTCATCATCCGCGAGGCATTGCCGATTCAATGCGTA
GAAGCCGTGTTTTTGGGGTTGTATCTCACCGCGGATATGAGTGAGGTACA
ACTACACCGGCGAGGAATACTTCGTAAAAAAAATGGATCGAGGTTATCGG
CATGTGACTTCGACAGCAAAGCTCATCATCCGCGAGGCATTGCCGATTCA
ATGCGTAGAAGCCGTGTTTTTGGGGTTGTATCTCACCGCGGATATGAGTG
AGGTGGATCGCTTTCCGGTGTGCTTTCGTTCTTCTTTGGATGGGCGAGTG
TACAGGCATATAATTCTGGCCGTGCGTAGCGGGAATGTTTGGGGAGCCTT
GGGCCTAAGCCGCCGCGACACGTTGATGTACAAGGAGCTCAAGTGGATCG
CTTTCCGGTGTGCTTTCGTTCTTCTTTGGATGGGCGAGTGTACAGGCATA
TAATTCTGGCCGTGCGTAGCGGGAATGTTTGGGGAGCCTTGGGCCTAAGC
CGCCGCGACACGTTGATGTACAAGGAGCTCAAGTATGAGCTATTTTCCAG
GCTGATGGGCGACTTCAGGGACTCATACGCCGGTTGTTGGCACCGTCTTG
ATCATATCTGGGTCGGATTCCCTATGCCTCACGATATATCTTCCAATGTG
CCCGTGAAGTGGAAGGTATGAGCTATTTTCCAGGCTGATGGGCGACTTCA
GGGACTCATACGCCGGTTGTTGGCACCGTCTTGATCATATCTGGGTCGGA
TTCCCTATGCCTCACGATATATCTTCCAATGTGCCCGTGAAGTGGAAGGT
GATGCGAGCCGATGTCGGGACGGAATCGGAATGGCTGAGCGCCGCTCCGA
AGCTCGACAGCTTCGTCGCTTGCGCCAACAGCCTTTCTGAATGCTTTTCC
ATTACCGGAAAGATTCCAGACCATCCGCTGGTCGCCAACAACACCGAGGA
CGGTCCATCATCAGTGATGCGAGCCGATGTCGGGACGGAATCGGAATGGC
TGAGCGCCGCTCCGAAGCTCGACAGCTTCGTCGCTTGCGCCAACAGCCTT
TCTGAATGCTTTTCCATTACCGGAAAGATTCCAGACCATCCGCTGGTCGC
CAACAACACCGAGGACGGTCCATCATCA
back to top