mRNA_P-fluviatile_contig11.1236.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1236.1
Unique NamemRNA_P-fluviatile_contig11.1236.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.1236.1 vs. uniprot
Match: D8LKF7_ECTSI (TFIIS central domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKF7_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 3.860e-21
Identity = 54/77 (70.13%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:    1 MLGAAALPPPPPAPVARPPVPASSAAPGAPVAGGQGVKRPRCLVPGCSNPVGRDVAYCSDDCVVAAQKQAVQALLAY 231
            MLG AALPPPPPAPV +  VPA   APGAP  GG G+KR R L  GC  PVGRDVA+CSDDCVV+AQ+QAV AL+AY
Sbjct:  874 MLGTAALPPPPPAPVVKAAVPAPRVAPGAPAIGGAGLKRTRKLTAGCDKPVGRDVAFCSDDCVVSAQRQAVHALVAY 950
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKF7_ECTSI3.860e-2170.13TFIIS central domain-containing protein (Fragment)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:2825602..2826063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size463
Cds size462
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.878442-CDS-P-fluviatile_contig11:2825601..28260631622815429.878442-CDS-P-fluviatile_contig11:2825601..2826063Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2825602..2826063 +
1693561819.58731-CDS-P-fluviatile_contig11:2825601..28260631693561819.58731-CDS-P-fluviatile_contig11:2825601..2826063Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2825602..2826063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1236.1prot_P-fluviatile_contig11.1236.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 2825602..2826063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1236.1

>prot_P-fluviatile_contig11.1236.1 ID=prot_P-fluviatile_contig11.1236.1|Name=mRNA_P-fluviatile_contig11.1236.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=154bp
MLGAAALPPPPPAPVARPPVPASSAAPGAPVAGGQGVKRPRCLVPGCSNP
VGRDVAYCSDDCVVAAQKQAVQALLAYHQKEQQSSAKVAAAGSRAAEAAP
NGDSGGGNAVAVIGGSSGGAAGTSGGGESTAGGEADGMEATPGAAAAKAE
ATKA
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mRNA from alignment at P-fluviatile_contig11:2825602..2826063+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1236.1 ID=mRNA_P-fluviatile_contig11.1236.1|Name=mRNA_P-fluviatile_contig11.1236.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=462bp|location=Sequence derived from alignment at P-fluviatile_contig11:2825602..2826063+ (Porterinema fluviatile SAG_2381)
ATGCTAGGGGCGGCCGCTCTCCCGCCGCCACCCCCGGCGCCGGTCGCGCG
TCCGCCGGTTCCCGCATCAAGTGCCGCGCCCGGCGCGCCCGTGGCCGGCG
GCCAGGGAGTGAAGCGCCCGCGCTGCCTCGTGCCGGGGTGCAGCAACCCT
GTCGGCAGAGACGTGGCGTACTGCTCGGACGACTGCGTGGTCGCGGCGCA
GAAGCAGGCCGTCCAGGCCCTCCTGGCGTACCACCAGAAAGAGCAGCAAT
CTTCTGCCAAGGTTGCTGCTGCTGGTAGTCGGGCGGCGGAAGCGGCGCCA
AACGGGGATAGCGGCGGAGGGAACGCTGTGGCGGTAATCGGGGGTAGCAG
CGGCGGCGCCGCAGGAACCAGCGGCGGCGGAGAATCAACAGCTGGTGGCG
AGGCAGACGGCATGGAGGCCACCCCCGGCGCCGCTGCAGCCAAGGCCGAG
GCGACGAAGGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:2825602..2826063+

>mRNA_P-fluviatile_contig11.1236.1 ID=mRNA_P-fluviatile_contig11.1236.1|Name=mRNA_P-fluviatile_contig11.1236.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=924bp|location=Sequence derived from alignment at P-fluviatile_contig11:2825602..2826063+ (Porterinema fluviatile SAG_2381)
ATGCTAGGGGCGGCCGCTCTCCCGCCGCCACCCCCGGCGCCGGTCGCGCG
TCCGCCGGTTCCCGCATCAAGTGCCGCGCCCGGCGCGCCCGTGGCCGGCG
GCCAGGGAGTGAAGCGCCCGCGCTGCCTCGTGCCGGGGTGCAGCAACCCT
GTCGGCAGAGACGTGGCGTACTGCTCGGACGACTGCGTGGTCGCGGCGCA
GAAGCAGGCCGTCCAGGCCCTCCTGGCGTACCACCAGAAAGAGCAGCAAT
CTTCTGCCAAGGTTGCTGCTGCTGGTAGTCGGGCGGCGGAAGCGGCGCCA
AACGGGGATAGCGGCGGAGGGAACGCTGTGGCGGTAATCGGGGGTAGCAG
CGGCGGCGCCGCAGGAACCAGCGGCGGCGGAGAATCAACAGCTGGTGGCG
AGGCAGACGGCATGGAGGCCACCCCCGGCGCCGCTGCAGCCAAGGCCGAG
GCGACGAAGGCGATGCTAGGGGCGGCCGCTCTCCCGCCGCCACCCCCGGC
GCCGGTCGCGCGTCCGCCGGTTCCCGCATCAAGTGCCGCGCCCGGCGCGC
CCGTGGCCGGCGGCCAGGGAGTGAAGCGCCCGCGCTGCCTCGTGCCGGGG
TGCAGCAACCCTGTCGGCAGAGACGTGGCGTACTGCTCGGACGACTGCGT
GGTCGCGGCGCAGAAGCAGGCCGTCCAGGCCCTCCTGGCGTACCACCAGA
AAGAGCAGCAATCTTCTGCCAAGGTTGCTGCTGCTGGTAGTCGGGCGGCG
GAAGCGGCGCCAAACGGGGATAGCGGCGGAGGGAACGCTGTGGCGGTAAT
CGGGGGTAGCAGCGGCGGCGCCGCAGGAACCAGCGGCGGCGGAGAATCAA
CAGCTGGTGGCGAGGCAGACGGCATGGAGGCCACCCCCGGCGCCGCTGCA
GCCAAGGCCGAGGCGACGAAGGCG
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