mRNA_P-fluviatile_contig11.1225.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1225.1
Unique NamemRNA_P-fluviatile_contig11.1225.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:2695924..2696519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size596
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1225.1prot_P-fluviatile_contig11.1225.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 2696079..2696447 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.7863946-UTR-P-fluviatile_contig11:2695923..26960781622815429.7863946-UTR-P-fluviatile_contig11:2695923..2696078Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2695924..2696078 +
1693561819.5478754-UTR-P-fluviatile_contig11:2695923..26960781693561819.5478754-UTR-P-fluviatile_contig11:2695923..2696078Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2695924..2696078 +
1622815429.811681-UTR-P-fluviatile_contig11:2696447..26965191622815429.811681-UTR-P-fluviatile_contig11:2696447..2696519Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2696448..2696519 +
1693561819.5666325-UTR-P-fluviatile_contig11:2696447..26965191693561819.5666325-UTR-P-fluviatile_contig11:2696447..2696519Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2696448..2696519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.8002276-CDS-P-fluviatile_contig11:2696078..26964471622815429.8002276-CDS-P-fluviatile_contig11:2696078..2696447Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2696079..2696447 +
1693561819.5567656-CDS-P-fluviatile_contig11:2696078..26964471693561819.5567656-CDS-P-fluviatile_contig11:2696078..2696447Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2696079..2696447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1225.1

>prot_P-fluviatile_contig11.1225.1 ID=prot_P-fluviatile_contig11.1225.1|Name=mRNA_P-fluviatile_contig11.1225.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=123bp
MLMQGQCTYIGSARGYGHAARRTSLRGAQQEAVTLAAEALPAVPCTGGKK
MQWARQRGADLVVLLEWDGRRAVIVTPNHEGKHSNDVVFERQLSFCAFLH
QQVMLVVCSPLKPFRHTVLPSH*
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mRNA from alignment at P-fluviatile_contig11:2695924..2696519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1225.1 ID=mRNA_P-fluviatile_contig11.1225.1|Name=mRNA_P-fluviatile_contig11.1225.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=596bp|location=Sequence derived from alignment at P-fluviatile_contig11:2695924..2696519+ (Porterinema fluviatile SAG_2381)
GCTACGAACGCAGAGGGTACGGCGGAAGACCCTTCGTCGGAGCCTTGATC
TTTGCGCGGATCGGCCCCCCCAACATGACTTAACGCTGGTCACCGCCCGA
ACGTATCTCGACTTTGGGCCACCCGTTCCTTATAAAAGCAAGAACGCCCA
GCGACATGCTGATGCAAGGGCAATGCACCTATATCGGTTCGGCTCGTGGG
TACGGTCACGCCGCCAGACGGACAAGTCTTCGTGGTGCACAGCAGGAAGC
AGTGACTCTCGCTGCCGAAGCTTTGCCAGCGGTTCCCTGTACCGGAGGGA
AAAAGATGCAGTGGGCTCGCCAGCGAGGAGCAGATTTAGTGGTGCTGCTT
GAGTGGGACGGCAGACGCGCCGTCATCGTCACCCCCAACCATGAAGGAAA
GCATAGCAATGACGTCGTTTTCGAACGTCAACTCTCCTTCTGCGCTTTCC
TCCACCAACAAGTCATGCTTGTCGTTTGCTCTCCGCTGAAACCCTTCCGT
CACACGGTTTTGCCCAGCCACTAGTCCATCTCCTTCGAAGACAGGATCCG
AGTCTACGGCGACACGACGGAAAGTGCTTTCGGGCTGAAGTCCCCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:2695924..2696519+

>mRNA_P-fluviatile_contig11.1225.1 ID=mRNA_P-fluviatile_contig11.1225.1|Name=mRNA_P-fluviatile_contig11.1225.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=738bp|location=Sequence derived from alignment at P-fluviatile_contig11:2695924..2696519+ (Porterinema fluviatile SAG_2381)
ATGCTGATGCAAGGGCAATGCACCTATATCGGTTCGGCTCGTGGGTACGG
TCACGCCGCCAGACGGACAAGTCTTCGTGGTGCACAGCAGGAAGCAGTGA
CTCTCGCTGCCGAAGCTTTGCCAGCGGTTCCCTGTACCGGAGGGAAAAAG
ATGCAGTGGGCTCGCCAGCGAGGAGCAGATTTAGTGGTGCTGCTTGAGTG
GGACGGCAGACGCGCCGTCATCGTCACCCCCAACCATGAAGGAAAGCATA
GCAATGACGTCGTTTTCGAACGTCAACTCTCCTTCTGCGCTTTCCTCCAC
CAACAAGTCATGCTTGTCGTTTGCTCTCCGCTGAAACCCTTCCGTCACAC
GGTTTTGCCCAGCCACTAGATGCTGATGCAAGGGCAATGCACCTATATCG
GTTCGGCTCGTGGGTACGGTCACGCCGCCAGACGGACAAGTCTTCGTGGT
GCACAGCAGGAAGCAGTGACTCTCGCTGCCGAAGCTTTGCCAGCGGTTCC
CTGTACCGGAGGGAAAAAGATGCAGTGGGCTCGCCAGCGAGGAGCAGATT
TAGTGGTGCTGCTTGAGTGGGACGGCAGACGCGCCGTCATCGTCACCCCC
AACCATGAAGGAAAGCATAGCAATGACGTCGTTTTCGAACGTCAACTCTC
CTTCTGCGCTTTCCTCCACCAACAAGTCATGCTTGTCGTTTGCTCTCCGC
TGAAACCCTTCCGTCACACGGTTTTGCCCAGCCACTAG
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