mRNA_P-fluviatile_contig11.1221.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1221.1
Unique NamemRNA_P-fluviatile_contig11.1221.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.1221.1 vs. uniprot
Match: A0A6H5JDG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDG8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 7.520e-17
Identity = 46/78 (58.97%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:  103 RRKVDRAFCAWLDRKNEQAHAEREARRRKEELLAKLRKLEASRRWKKRPVVCAYTYGANIGAWNWSDEASVEMTEGGG 336
            R K +RAF  WL RK  +A A+RE +RRKEE L K+R LE SRRWKKRPVVCAYTYGA +GA  W D      T+  G
Sbjct:  430 RDKANRAFREWLGRKKGEAQADREVQRRKEENLEKIRVLEVSRRWKKRPVVCAYTYGAKVGAREWQDREEGVRTQAEG 507
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDG8_9PHAE7.520e-1758.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:2680018..2681083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size536
Cds size405
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1221.1prot_P-fluviatile_contig11.1221.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 2680147..2681083 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815427.0083728-UTR-P-fluviatile_contig11:2680017..26801461622815427.0083728-UTR-P-fluviatile_contig11:2680017..2680146Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2680018..2680146 -
1693561809.4960346-UTR-P-fluviatile_contig11:2680017..26801461693561809.4960346-UTR-P-fluviatile_contig11:2680017..2680146Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2680018..2680146 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815427.0242617-CDS-P-fluviatile_contig11:2680146..26803391622815427.0242617-CDS-P-fluviatile_contig11:2680146..2680339Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2680147..2680339 -
1693561809.5050519-CDS-P-fluviatile_contig11:2680146..26803391693561809.5050519-CDS-P-fluviatile_contig11:2680146..2680339Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2680147..2680339 -
1622815427.0342524-CDS-P-fluviatile_contig11:2680871..26810831622815427.0342524-CDS-P-fluviatile_contig11:2680871..2681083Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2680872..2681083 -
1693561809.513926-CDS-P-fluviatile_contig11:2680871..26810831693561809.513926-CDS-P-fluviatile_contig11:2680871..2681083Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2680872..2681083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1221.1

>prot_P-fluviatile_contig11.1221.1 ID=prot_P-fluviatile_contig11.1221.1|Name=mRNA_P-fluviatile_contig11.1221.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=135bp
ETVRETERGREREKVRQNGREREREKERQRQEEKRRKVDRAFCAWLDRKN
EQAHAEREARRRKEELLAKLRKLEASRRWKKRPVVCAYTYGANIGAWNWS
DEASVEMTEGGGKTRATNDANAKQKQWHSKEDIF*
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mRNA from alignment at P-fluviatile_contig11:2680018..2681083-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1221.1 ID=mRNA_P-fluviatile_contig11.1221.1|Name=mRNA_P-fluviatile_contig11.1221.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1066bp|location=Sequence derived from alignment at P-fluviatile_contig11:2680018..2681083- (Porterinema fluviatile SAG_2381)
GAAACAGTGAGAGAAACGGAGAGGGGGAGGGAGAGGGAGAAGGTCAGGCA
GAACGGGAGGGAGAGGGAGAGGGAGAAGGAGAGGCAGCGGCAAGAGGAGA
AGCGGCGCAAGGTAGACCGGGCGTTCTGCGCGTGGCTGGACCGCAAGAAC
GAGCAGGCGCACGCCGAGCGCGAGGCGCGGCGACGGAAGGAGGAGCTCCT
GGCGAAGCTTAGGTGCATTAAGAACGCGTGTGCGGGTGTGCGAGTTTTGG
TGATCGTGGAATAGATGGAGGAGGCCCCTTGTCGATGTGTGGACGAGCTT
TTGGGCTGGCGTTGGGGTTATTGGCGAGAAACGAGAACTGTTCTTCTTGC
TCTTTGGTTGAGACCGTGTCGCCCCCACCAGCGTGAGACTGCTGGGCATA
GTCGACAAGTACATTGATACGAAATCTCGCTGTTAATTTTTCGTTACTAC
ATTGACGTTTGTGGAGCCGCTAGCTGCTGAACGCAGTAGGTGAATAGATG
ATTCAATGTCAACTGCTTCAATGCTTGACAATTTTGTTTTCCCCCTCGTT
CATTGCTGACGTCTTCCTTTCTCTTGATCCCCTCCCCCTCTCTCTGTCGC
CACCTCCCTCCCTTCCCCTGTACCTGCCTGTCTCTCTCGCCCCCCATGCC
TGCCCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTAACAACTAAGGCAT
GCAAAACATGAGTACGCCCCCCCCATGCCTGGCTTCTCCCTTAGGAAGTT
GGAGGCCTCGCGGCGATGGAAGAAACGCCCGGTCGTTTGCGCGTACACCT
ATGGTGCTAACATCGGCGCGTGGAATTGGAGCGACGAAGCGTCGGTCGAG
ATGACCGAAGGAGGGGGCAAGACGAGGGCAACAAATGATGCGAACGCAAA
ACAGAAGCAGTGGCACAGCAAGGAAGATATTTTTTAGGCGAAAAGGAAGG
GGGTGGCCGTGGGGTGGACGAGGAGGGTGGCGACAGGAAAGAATACCAGA
CAAAGGAGCCGGAGAACAGAGGGCCAGAGATACAGGCGGACGAGGGGAAT
GATGAGGTAGAGGAGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:2680018..2681083-

>mRNA_P-fluviatile_contig11.1221.1 ID=mRNA_P-fluviatile_contig11.1221.1|Name=mRNA_P-fluviatile_contig11.1221.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=810bp|location=Sequence derived from alignment at P-fluviatile_contig11:2680018..2681083- (Porterinema fluviatile SAG_2381)
GAAACAGTGAGAGAAACGGAGAGGGGGAGGGAGAGGGAGAAGGTCAGGCA
GAACGGGAGGGAGAGGGAGAGGGAGAAGGAGAGGCAGCGGCAAGAGGAGA
AGCGGCGCAAGGTAGACCGGGCGTTCTGCGCGTGGCTGGACCGCAAGAAC
GAGCAGGCGCACGCCGAGCGCGAGGCGCGGCGACGGAAGGAGGAGCTCCT
GGCGAAGCTTAGGAAACAGTGAGAGAAACGGAGAGGGGGAGGGAGAGGGA
GAAGGTCAGGCAGAACGGGAGGGAGAGGGAGAGGGAGAAGGAGAGGCAGC
GGCAAGAGGAGAAGCGGCGCAAGGTAGACCGGGCGTTCTGCGCGTGGCTG
GACCGCAAGAACGAGCAGGCGCACGCCGAGCGCGAGGCGCGGCGACGGAA
GGAGGAGCTCCTGGCGAAGCTTAGGAAGTTGGAGGCCTCGCGGCGATGGA
AGAAACGCCCGGTCGTTTGCGCGTACACCTATGGTGCTAACATCGGCGCG
TGGAATTGGAGCGACGAAGCGTCGGTCGAGATGACCGAAGGAGGGGGCAA
GACGAGGGCAACAAATGATGCGAACGCAAAACAGAAGCAGTGGCACAGCA
AGGAAGATATTTTTTAGGAAGTTGGAGGCCTCGCGGCGATGGAAGAAACG
CCCGGTCGTTTGCGCGTACACCTATGGTGCTAACATCGGCGCGTGGAATT
GGAGCGACGAAGCGTCGGTCGAGATGACCGAAGGAGGGGGCAAGACGAGG
GCAACAAATGATGCGAACGCAAAACAGAAGCAGTGGCACAGCAAGGAAGA
TATTTTTTAG
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