mRNA_P-fluviatile_contig11.1212.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1212.1
Unique NamemRNA_P-fluviatile_contig11.1212.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:2579527..2580201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size253
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.9546623-CDS-P-fluviatile_contig11:2579526..25797161622815426.9546623-CDS-P-fluviatile_contig11:2579526..2579716Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2579527..2579716 +
1693561809.4774551-CDS-P-fluviatile_contig11:2579526..25797161693561809.4774551-CDS-P-fluviatile_contig11:2579526..2579716Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2579527..2579716 +
1622815426.969618-CDS-P-fluviatile_contig11:2580139..25802011622815426.969618-CDS-P-fluviatile_contig11:2580139..2580201Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2580140..2580201 +
1693561809.4865143-CDS-P-fluviatile_contig11:2580139..25802011693561809.4865143-CDS-P-fluviatile_contig11:2580139..2580201Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2580140..2580201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1212.1prot_P-fluviatile_contig11.1212.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 2579527..2580201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1212.1

>prot_P-fluviatile_contig11.1212.1 ID=prot_P-fluviatile_contig11.1212.1|Name=mRNA_P-fluviatile_contig11.1212.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=84bp
GIIYLVIIPDADLLVQKLKKLTMGLEWSAPPGRAEVPSSLLPFTVWSKDD
LRMMRRRHAVSVGGKYALETKHLAKLLDTDRRTS
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mRNA from alignment at P-fluviatile_contig11:2579527..2580201+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1212.1 ID=mRNA_P-fluviatile_contig11.1212.1|Name=mRNA_P-fluviatile_contig11.1212.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=675bp|location=Sequence derived from alignment at P-fluviatile_contig11:2579527..2580201+ (Porterinema fluviatile SAG_2381)
GGCATTATTTACCTGGTAATAATTCCGGACGCCGACCTCCTCGTGCAAAA
ACTGAAAAAGCTCACGATGGGTTTGGAGTGGTCGGCCCCACCGGGCCGGG
CAGAAGTCCCTTCGAGCCTCCTACCATTCACAGTCTGGAGCAAGGATGAT
CTTAGGATGATGCGCAGGCGTCACGCGGTATCTGTAGGAGGTGGGTGGAT
CAAAGATACGAGGGCGGCGAGATACCGTAGTCACAAGATATCACACCCCC
TGGGGCGATTTTTGAAGCTCGGTATCTCGAGGGGTGAACCAACGTCGAAC
GATGTGTCGCTACAAAGCCTCCATATCAACTCTCGAAAGCCGCTCCGTTT
GACGAAACTAACTCTTTCCGCGGGGAGAAATCGACCGTTGGAAATCCACC
AGTGGGTTGATGTCGTATGCGATCTACGGTGAAGCGCGCGTGGCTATTTA
AGGGCTGCTGGTGTATGTTCAGAGTTTGGCCGCGTGCTTGTCATACCATG
CGTCCCGATGTTCTTCACAGCGTCTTGCAACTAATCGGCATGAACGAGTC
CTCCTGTCTTCTGAACAAATCGATTCATTGGTGGTTGCTTGTCCTAATGG
CTGCCTGCCGCAGGCAAATATGCTCTCGAGACGAAGCACTTGGCTAAGCT
TCTCGACACCGACCGTCGCACATCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:2579527..2580201+

>mRNA_P-fluviatile_contig11.1212.1 ID=mRNA_P-fluviatile_contig11.1212.1|Name=mRNA_P-fluviatile_contig11.1212.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=504bp|location=Sequence derived from alignment at P-fluviatile_contig11:2579527..2580201+ (Porterinema fluviatile SAG_2381)
GGCATTATTTACCTGGTAATAATTCCGGACGCCGACCTCCTCGTGCAAAA
ACTGAAAAAGCTCACGATGGGTTTGGAGTGGTCGGCCCCACCGGGCCGGG
CAGAAGTCCCTTCGAGCCTCCTACCATTCACAGTCTGGAGCAAGGATGAT
CTTAGGATGATGCGCAGGCGTCACGCGGTATCTGTAGGAGGGCATTATTT
ACCTGGTAATAATTCCGGACGCCGACCTCCTCGTGCAAAAACTGAAAAAG
CTCACGATGGGTTTGGAGTGGTCGGCCCCACCGGGCCGGGCAGAAGTCCC
TTCGAGCCTCCTACCATTCACAGTCTGGAGCAAGGATGATCTTAGGATGA
TGCGCAGGCGTCACGCGGTATCTGTAGGAGGCAAATATGCTCTCGAGACG
AAGCACTTGGCTAAGCTTCTCGACACCGACCGTCGCACATCGGCAAATAT
GCTCTCGAGACGAAGCACTTGGCTAAGCTTCTCGACACCGACCGTCGCAC
ATCG
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