mRNA_P-fluviatile_contig11.1204.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1204.1
Unique NamemRNA_P-fluviatile_contig11.1204.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:2494198..2495937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size194
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.7950032-CDS-P-fluviatile_contig11:2494197..24942781622815426.7950032-CDS-P-fluviatile_contig11:2494197..2494278Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2494198..2494278 -
1693561809.4398332-CDS-P-fluviatile_contig11:2494197..24942781693561809.4398332-CDS-P-fluviatile_contig11:2494197..2494278Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2494198..2494278 -
1622815426.808738-CDS-P-fluviatile_contig11:2495826..24959371622815426.808738-CDS-P-fluviatile_contig11:2495826..2495937Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2495827..2495937 -
1693561809.4500823-CDS-P-fluviatile_contig11:2495826..24959371693561809.4500823-CDS-P-fluviatile_contig11:2495826..2495937Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2495827..2495937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1204.1prot_P-fluviatile_contig11.1204.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 2494198..2495937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1204.1

>prot_P-fluviatile_contig11.1204.1 ID=prot_P-fluviatile_contig11.1204.1|Name=mRNA_P-fluviatile_contig11.1204.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=64bp
MRAFVIEHAVDEGAGRRTVGVLKNDEPQPTPRKGEALLHGVHRNSRARIR
GSCREGKLLRGGRG
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mRNA from alignment at P-fluviatile_contig11:2494198..2495937-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1204.1 ID=mRNA_P-fluviatile_contig11.1204.1|Name=mRNA_P-fluviatile_contig11.1204.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1740bp|location=Sequence derived from alignment at P-fluviatile_contig11:2494198..2495937- (Porterinema fluviatile SAG_2381)
ATGCGTGCGTTCGTGATAGAGCATGCCGTCGACGAGGGGGCTGGACGACG
AACAGTTGGGGTTCTAAAGAACGATGAGCCACAGCCAACACCCAGAAAAG
GAGAAGCCCTGGTAAGGGTACTTCGCGCCGGCGTCTGCAACACCGACCTC
GAAATCTTGCATGGGTAGGTTGCACAGCAAGTGTCTCTTTTGGTTCGGAA
CTGGGAAGCGAAGGTGTACGAAGGGTAGATGTCTCTACTTTTTAGAAGTA
AATTCAACAGCGATCCATTGTTTCAGTTGTTAGAGCGCGACCCGACACAT
GTAATGTGTAAACATGTGCCCCCCCTCCACAAGTTCACCTTACTTTCCAA
CACCGCCCTGTTGTGAGCCCCATTAAACAACTATTTAATAGTGGCGCTCC
GAGGGCCGCCGCATGGGCCAGCCGCCGCCGCCGTCGCCGCCGCGTCGGCG
GTCAGGTTTGCGTTATCCGTGGCGCCGTGAGAAATTTTCTTGTCGCTTGA
CGGGGCAAGCGGCTCTCTCTCTCCGTCCCTTTCGCGGCTGACGCCGCTGC
CACCGCCGTCACCGTCGCCCTGTCGGGAGGACCATGATGCCCCCTCCCAC
CGGGAAGCCATCTGCTTGTTGCTTTTTCCTTCGCCCCTATTCCGCTCCCC
TGCGTCCTGTTTCGGTTTCATCACAGGGCTCCATCACGTCAAACCAAGAA
GGCTCAATCCATTGCAGTTCAGTCGCGTCCCATTGCAAGGTTTGCCTTGC
TGTTTATGTGGCGACACTTTCCCTATGTTCCGGGCAAACCCACGCGATTG
AGGTGGACGGGACCTGCACTGCTGCATGTTAATGCAGACGTCTCCGGATA
CTAATAGGTTTGACTACTTTTAATGTGTGTTTCATGCGAGGAAGTATCCT
TGAGATTCAGCGGACGACAAATCTCACCAAGCCGCCTGCTTCAGAAAAAA
GACTTGTCCTCAAAGCGGGGGTAATCATTATATATCGTTCATTGATACTC
GGTATTTTGAAATTGAACTTTGGGGCAATCTAATAGTGCCGGCACGTTAA
TGAGAAACACCTATTGTGCGTGAGGCTCATTTCTTATTTTGATCCTTCCT
CCTGAGCGCAGGCCATGATAAAGGCTTAGTGCGGCGCCGGCAGCTGACCC
CAATTTCTTGCGGGGCTTTCTTATTCTTTCAAATATCTGAGCCTCGATTT
CTTTCAAACATGTTTCTTGCGAGCGGGCCAGCTTTGTCTTGCAAATTCCC
ATCCACAGCGACCAACCACGACGCGCAACAAGCTTTCTGGTTCCTTTCGG
GTTCAAAAAAGTTCATTTTCTGTCGAGCCGAAGCGCGCGAGCTTGAAGAT
TTAAGCCACGGCTGAGTCTTCTATGCTTCATGACTTGCGGCTTCAGAATG
AGCGGTAGGCAGGAAGGCAGCATATCTGAACATTATTCAGGGGATCCGTT
GTTGCTGCCTCGCGCGCGGGGCGTCCTTCCTTCTAGTTTCTTGGATTTTT
ACACGTGAGGCAGAAAGTCAAAAGAGCTGTGGGCGCACTATGACCTGCTT
TCGGCTCGACAGATGGTAAGCCGTCTTCGATCGAAGCTCCACGATGATAT
GTTACATGGTGCACCCGTTCGTTTTTCATCCCGCCCCTCGATGTCCCGCC
CTTACCCAGTTACATGGGGTTCACCGGAATAGTCGGGCACGAATTCGTGG
GAGTTGTAGAGAAGGTAAACTCCTCCGAGGCGGGCGAGGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:2494198..2495937-

>mRNA_P-fluviatile_contig11.1204.1 ID=mRNA_P-fluviatile_contig11.1204.1|Name=mRNA_P-fluviatile_contig11.1204.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=384bp|location=Sequence derived from alignment at P-fluviatile_contig11:2494198..2495937- (Porterinema fluviatile SAG_2381)
ATGCGTGCGTTCGTGATAGAGCATGCCGTCGACGAGGGGGCTGGACGACG
AACAGTTGGGGTTCTAAAGAACGATGAGCCACAGCCAACACCCAGAAAAG
GAGAAGCCCTGATGCGTGCGTTCGTGATAGAGCATGCCGTCGACGAGGGG
GCTGGACGACGAACAGTTGGGGTTCTAAAGAACGATGAGCCACAGCCAAC
ACCCAGAAAAGGAGAAGCCCTGTTACATGGGGTTCACCGGAATAGTCGGG
CACGAATTCGTGGGAGTTGTAGAGAAGGTAAACTCCTCCGAGGCGGGCGA
GGATTACATGGGGTTCACCGGAATAGTCGGGCACGAATTCGTGGGAGTTG
TAGAGAAGGTAAACTCCTCCGAGGCGGGCGAGGA
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