mRNA_P-fluviatile_contig11.1197.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1197.1
Unique NamemRNA_P-fluviatile_contig11.1197.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:2434115..2434600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size456
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.683341-UTR-P-fluviatile_contig11:2434114..24341441622815429.683341-UTR-P-fluviatile_contig11:2434114..2434144Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2434115..2434144 +
1693561814.803655-UTR-P-fluviatile_contig11:2434114..24341441693561814.803655-UTR-P-fluviatile_contig11:2434114..2434144Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2434115..2434144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.6935542-CDS-P-fluviatile_contig11:2434144..24346001622815429.6935542-CDS-P-fluviatile_contig11:2434144..2434600Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2434145..2434600 +
1693561818.8015954-CDS-P-fluviatile_contig11:2434144..24346001693561818.8015954-CDS-P-fluviatile_contig11:2434144..2434600Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2434145..2434600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1197.1prot_P-fluviatile_contig11.1197.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 2434145..2434600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1197.1

>prot_P-fluviatile_contig11.1197.1 ID=prot_P-fluviatile_contig11.1197.1|Name=mRNA_P-fluviatile_contig11.1197.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=152bp
MRTGRQRKGGGAVKVRRRRTCCLASSSCRTFPPESEQKGHLKSTYGGSQG
WRVCQGDRKSVCQPFDERDVRPVLVHRLPGPRRTSTMLALRNGTHIRGDA
QGRGPYQETLYFYLLWLGYGRERGRRRANARKITRIQTKRTLLPHYKKAA
Q*
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mRNA from alignment at P-fluviatile_contig11:2434115..2434600+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1197.1 ID=mRNA_P-fluviatile_contig11.1197.1|Name=mRNA_P-fluviatile_contig11.1197.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=486bp|location=Sequence derived from alignment at P-fluviatile_contig11:2434115..2434600+ (Porterinema fluviatile SAG_2381)
CTTAAATCCGGCGCGTGTAGAAGACAAGGAATGCGGACGGGACGGCAGAG
GAAGGGGGGTGGGGCGGTCAAAGTTCGACGGAGGCGCACTTGCTGCCTGG
CGTCATCATCTTGCCGCACCTTTCCACCGGAGAGTGAGCAGAAAGGTCAT
CTCAAGAGCACGTACGGCGGATCTCAAGGCTGGCGCGTTTGTCAAGGCGA
CAGGAAGAGCGTTTGCCAGCCGTTTGATGAACGCGATGTACGGCCCGTTT
TGGTCCATCGACTCCCTGGTCCGAGAAGAACGAGTACAATGCTTGCTTTG
CGAAATGGCACACATATACGCGGGGATGCTCAAGGTCGCGGTCCGTACCA
AGAAACGTTATACTTCTATTTGCTTTGGCTCGGTTATGGAAGGGAAAGGG
GGAGAAGGCGGGCAAACGCACGAAAAATAACAAGGATTCAAACCAAACGG
ACCCTGCTGCCGCACTATAAAAAGGCAGCTCAGTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:2434115..2434600+

>mRNA_P-fluviatile_contig11.1197.1 ID=mRNA_P-fluviatile_contig11.1197.1|Name=mRNA_P-fluviatile_contig11.1197.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=912bp|location=Sequence derived from alignment at P-fluviatile_contig11:2434115..2434600+ (Porterinema fluviatile SAG_2381)
ATGCGGACGGGACGGCAGAGGAAGGGGGGTGGGGCGGTCAAAGTTCGACG
GAGGCGCACTTGCTGCCTGGCGTCATCATCTTGCCGCACCTTTCCACCGG
AGAGTGAGCAGAAAGGTCATCTCAAGAGCACGTACGGCGGATCTCAAGGC
TGGCGCGTTTGTCAAGGCGACAGGAAGAGCGTTTGCCAGCCGTTTGATGA
ACGCGATGTACGGCCCGTTTTGGTCCATCGACTCCCTGGTCCGAGAAGAA
CGAGTACAATGCTTGCTTTGCGAAATGGCACACATATACGCGGGGATGCT
CAAGGTCGCGGTCCGTACCAAGAAACGTTATACTTCTATTTGCTTTGGCT
CGGTTATGGAAGGGAAAGGGGGAGAAGGCGGGCAAACGCACGAAAAATAA
CAAGGATTCAAACCAAACGGACCCTGCTGCCGCACTATAAAAAGGCAGCT
CAGTGAATGCGGACGGGACGGCAGAGGAAGGGGGGTGGGGCGGTCAAAGT
TCGACGGAGGCGCACTTGCTGCCTGGCGTCATCATCTTGCCGCACCTTTC
CACCGGAGAGTGAGCAGAAAGGTCATCTCAAGAGCACGTACGGCGGATCT
CAAGGCTGGCGCGTTTGTCAAGGCGACAGGAAGAGCGTTTGCCAGCCGTT
TGATGAACGCGATGTACGGCCCGTTTTGGTCCATCGACTCCCTGGTCCGA
GAAGAACGAGTACAATGCTTGCTTTGCGAAATGGCACACATATACGCGGG
GATGCTCAAGGTCGCGGTCCGTACCAAGAAACGTTATACTTCTATTTGCT
TTGGCTCGGTTATGGAAGGGAAAGGGGGAGAAGGCGGGCAAACGCACGAA
AAATAACAAGGATTCAAACCAAACGGACCCTGCTGCCGCACTATAAAAAG
GCAGCTCAGTGA
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