mRNA_P-fluviatile_contig11.1191.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1191.1
Unique NamemRNA_P-fluviatile_contig11.1191.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.1191.1 vs. uniprot
Match: D8LGD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD8_ECTSI)

HSP 1 Score: 309 bits (791), Expect = 4.620e-98
Identity = 169/250 (67.60%), Postives = 181/250 (72.40%), Query Frame = 2 
Query:  386 SGRRSRRGKYPVIELYRRDESSINEDDXXAG-------DDRDDGALDGICLPPHGSPSRPXXXXXXXXARGEQTAMDRLRWVLRLGPEQVDLMLEAFPALADVHHNKLDLQPKLRFLRQTIGGDVSMVAVSFPQFFGHPLERHIAPRHAFLVASGCPSGARLLEGGCRGLRRMLELPANRFVAEMAPGREVSDYRRFEQAFLKGPFDAARNGDAETLRLLRSHGWDCWETDRQGRTALFWAAGGGSVEAC 1114
            SG RSRRGKYPVIELYRRD       D  AG              L G  LP +G   R            + TA+D LR VL L  +QVD+MLE+FP LA V  +KL L  KLRFLR TIG +V  VAVSFPQFFGHPLER IAPRHAFLV++G PSG RLLE GCRGLRRMLELP NRFV EM PGREVSDYRRFEQAFL+GPFDAAR GD ETLRLLRSHGWDCWETDR+GRTALFWAAGGGSVEAC
Sbjct:  124 SGGRSRRGKYPVIELYRRDADGSTTADTAAGIXXXXXXXXXXXXGLAGGSLP-YG---RRGGVGARRSVEPQATAVDHLRSVLGLASDQVDMMLESFPTLAHVDPDKLGLPAKLRFLRHTIGAEVRTVAVSFPQFFGHPLERLIAPRHAFLVSNGRPSGDRLLETGCRGLRRMLELPVNRFVVEMVPGREVSDYRRFEQAFLRGPFDAARKGDGETLRLLRSHGWDCWETDRRGRTALFWAAGGGSVEAC 369
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BLAST of mRNA_P-fluviatile_contig11.1191.1 vs. uniprot
Match: A0A6H5KU03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU03_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.290e-47
Identity = 119/246 (48.37%), Postives = 127/246 (51.63%), Query Frame = 2 
Query:  395 RSRRGKYPVIELYRRDESSINEDDXXAG------DDRDDGALDGICLPPHGSPSRPXXXXXXXXARGEQTAMDRLRWVLRLGPEQVDLMLEAFPALADVHHNKLDLQPKLRFLRQTIGGDVSMVAVSFPQFFGHPLERHIAPRHAFLVASGCPSGARLLEGGCRGLRRMLELPANRFVAEMAPGREVSDYRRFEQAFLKGPFDAARNGDAETLRLLRSHGWDCWETDRQGRTALFWAAGGGSVEAC 1114
            RSRRGKYPVIELYRRD       D  AG      DD DD  L G  LP +G   R         A    TA+D LR VL L  +QVDLMLE+FP LA V  +KL L  KLRFLR TIGG+V  VAVSFPQFFGHPLER IAPRHAFLVA+G PSGA                                                                WDCWETDR+GRTALFWAAGGGSVEAC
Sbjct:   87 RSRRGKYPVIELYRRDPQGSTIADAAAGIDVGGCDDDDDDGLAGRRLP-YG---RRGEAGARRTAEPPATAVDHLRSVLGLASDQVDLMLESFPTLAHVDPDKLGLPAKLRFLRHTIGGEVRTVAVSFPQFFGHPLERLIAPRHAFLVANGRPSGAW---------------------------------------------------------------WDCWETDRRGRTALFWAAGGGSVEAC 265
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGD8_ECTSI4.620e-9867.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU03_9PHAE1.290e-4748.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:2396294..2399167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.2
Seed ortholog evalue1.7e-82
Seed eggNOG ortholog2880.D8LGD8
Preferred nameANKRD16
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
EC2.3.1.225
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons5
Model size1118
Cds size1116
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1191.1prot_P-fluviatile_contig11.1191.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 2396295..2399167 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.3340993-UTR-P-fluviatile_contig11:2396293..23962941622815426.3340993-UTR-P-fluviatile_contig11:2396293..2396294Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2396294..2396294 +
1693561809.0765803-UTR-P-fluviatile_contig11:2396293..23962941693561809.0765803-UTR-P-fluviatile_contig11:2396293..2396294Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2396294..2396294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.3502088-CDS-P-fluviatile_contig11:2396294..23969991622815426.3502088-CDS-P-fluviatile_contig11:2396294..2396999Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2396295..2396999 +
1693561809.0894656-CDS-P-fluviatile_contig11:2396294..23969991693561809.0894656-CDS-P-fluviatile_contig11:2396294..2396999Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2396295..2396999 +
1622815426.3639903-CDS-P-fluviatile_contig11:2397378..23975111622815426.3639903-CDS-P-fluviatile_contig11:2397378..2397511Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2397379..2397511 +
1693561809.184711-CDS-P-fluviatile_contig11:2397378..23975111693561809.184711-CDS-P-fluviatile_contig11:2397378..2397511Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2397379..2397511 +
1622815426.3771608-CDS-P-fluviatile_contig11:2397868..23979321622815426.3771608-CDS-P-fluviatile_contig11:2397868..2397932Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2397869..2397932 +
1693561809.203559-CDS-P-fluviatile_contig11:2397868..23979321693561809.203559-CDS-P-fluviatile_contig11:2397868..2397932Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2397869..2397932 +
1622815426.3884826-CDS-P-fluviatile_contig11:2398637..23987691622815426.3884826-CDS-P-fluviatile_contig11:2398637..2398769Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2398638..2398769 +
1693561809.2148829-CDS-P-fluviatile_contig11:2398637..23987691693561809.2148829-CDS-P-fluviatile_contig11:2398637..2398769Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2398638..2398769 +
1622815426.4053082-CDS-P-fluviatile_contig11:2399085..23991671622815426.4053082-CDS-P-fluviatile_contig11:2399085..2399167Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2399086..2399167 +
1693561809.224868-CDS-P-fluviatile_contig11:2399085..23991671693561809.224868-CDS-P-fluviatile_contig11:2399085..2399167Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2399086..2399167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1191.1

>prot_P-fluviatile_contig11.1191.1 ID=prot_P-fluviatile_contig11.1191.1|Name=mRNA_P-fluviatile_contig11.1191.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=372bp
MPNMAAVVVLAAIGGDLIRRGETFSLLAPASLARAHDVYQYYYQHRRGRP
SNSCLDGHDAERGEKQPKRGSRRQRGWHDPTRRRHCSTSGASTTLRSSSN
LAASDELPVLDGVPGAAAAPSSSSWPSISGRRSRRGKYPVIELYRRDESS
INEDDDDAGDDRDDGALDGICLPPHGSPSRPPPPAAAAAARGEQTAMDRL
RWVLRLGPEQVDLMLEAFPALADVHHNKLDLQPKLRFLRQTIGGDVSMVA
VSFPQFFGHPLERHIAPRHAFLVASGCPSGARLLEGGCRGLRRMLELPAN
RFVAEMAPGREVSDYRRFEQAFLKGPFDAARNGDAETLRLLRSHGWDCWE
TDRQGRTALFWAAGGGSVEACT
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mRNA from alignment at P-fluviatile_contig11:2396294..2399167+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1191.1 ID=mRNA_P-fluviatile_contig11.1191.1|Name=mRNA_P-fluviatile_contig11.1191.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2874bp|location=Sequence derived from alignment at P-fluviatile_contig11:2396294..2399167+ (Porterinema fluviatile SAG_2381)
AATGCCGAATATGGCCGCCGTTGTGGTCCTTGCAGCTATAGGTGGCGACC
TCATCAGGCGAGGCGAGACATTTTCGTTGCTGGCACCTGCCTCATTGGCC
CGAGCACATGACGTATACCAGTATTATTACCAGCACCGCAGAGGTCGCCC
AAGCAACTCCTGCCTGGACGGACACGACGCGGAGCGCGGGGAGAAGCAGC
CGAAGCGGGGATCGCGCCGTCAGAGGGGTTGGCACGATCCTACAAGACGT
CGACATTGCAGTACTAGCGGCGCATCCACGACATTGCGTTCCTCATCAAA
CCTAGCGGCGTCGGATGAACTCCCGGTCCTTGATGGAGTGCCGGGTGCTG
CTGCCGCGCCTTCGTCGTCGTCGTGGCCGAGCATCAGCGGCCGCCGCTCG
AGGCGCGGAAAGTACCCGGTTATCGAGTTATATCGGCGGGATGAAAGTAG
CATCAATGAGGACGATGACGATGCTGGTGATGATCGTGATGATGGTGCGC
TCGACGGAATCTGCTTGCCGCCGCATGGTTCTCCCTCACGTCCCCCTCCT
CCTGCTGCTGCTGCTGCCGCGAGAGGAGAGCAGACGGCGATGGATCGCCT
GCGGTGGGTGCTGCGGCTAGGGCCGGAGCAGGTCGACCTGATGCTGGAGG
CGTTTCCGGCACTTGCGGACGTGCACCACAACAAGCTTGATTTGCAGCCG
AAGCTGGTGAGCTGGGAGAACACCGCAAGTCAGTCCATCTAGGCAATGCT
GTTTCGTTGCACAAGCAAAATAATGGGCTTTGACGACGACCACCCAGCTG
ATAAGCAATGCGTGTCCGCCACAGCAGTCGTATGCAGGTCGTGTACGCCG
TTGGATACTCACAAGGTAGCTGTACAGCTCTGGCGGAACCGATTGCAGGA
GACGCCATTTCAGACGTCGCCGGCACAAAACCGCCACCCACTTTGTCGTC
CGGCCGTTTCCAGGTCTCCCGCCGCCGACGCATTCTGCGAATGCACTTTT
GCTGTTCCCGCCGAGCCAACACAGACCCACCACGAAGCATGCACACCCTG
CTGTCGTGACGCTCGCTGCAAATAATTCCTTGCAGCGCTTCCTCCGCCAG
ACAATCGGCGGCGACGTGTCCATGGTGGCCGTCTCCTTCCCTCAATTCTT
CGGACACCCGCTGGAGAGGCACATCGCCCCGAGACACGCCTTCCTCGTCG
CGAGTGGCTGCCCATCAGGTGTAACGATGGATGTGATTGCATCGCATTGG
CAACGCTTGTTTTTGATCGTTTCTTCGCCGGATCTTGGTGCGGAGTTTTT
GAGTTAGTCAAACTAAAGGAGCTATCGCAATAATAAAAGCAGCGCTCTGC
TCTGCCATTCCTTGTTGTCCTCAGATCATCAGTACAAGGCGCACCTCGCC
CCCCCCTACCCTCTTAACCGGGGGCGAGCAGGAGAGGGGCGGCGCGAGTA
TAGCGCGGAATATCTCGAGTGTGCTGCATGCCTGCCGCGAGATCCTTCGT
TGCCGTGCCGAACTGGTGTTTTTCGAGCTTTGTTTCATTTTTGCGTATGC
GTTGGTGCAATGACTCCGCCAACAGGGGCGCGACTCCTCGAGGGCGGGTG
CCGAGGGCTGAGGCGGATGCTGGAGCTGCCAGCCAATAGGCCAGTGTGTT
TCGTTTATCGACATGGCACATTAATGTCCACATGGATTGTACACAAGCAC
AGCTCGGAGGAGCCTCGGTGTTTTCGCCAGTAGACGAGTGACGAGGGGTT
GCTGGTCCATTTTTTTGTGAGCTTTTAGCCCAGGCGCTTCAAGAGCGAGT
TGATCGTCGCAAGAAGCATTTGTGTTGTCAGGCAAAAGATTTCTCAGCAA
CCAGCAAGAGGACCTTGGGACGAACATAACGTCGGCGGCAAGGGCGGCGA
TGACGACCACGACGACGATTGTCCGTCCACAACTGACTCTGACGGATATT
GATCGTAGTCTGTCGGTTGCCATGCCTCGGTAGGTGTCGATCGATAGGTC
GATCGATGCGTCGATCGATCAGTGGGCGTATCGTTGGTCCGGGGTCTGTT
TGCACTCTGCCGGGCGCGGCGCCTCACATCCATTTCACGTTCGCGAAAAC
TTGTACCCAAGCGCACGCGGGGGCACAAAAATGCCGAACAGGCGCAATTT
CTCCCCAAAAATTTCAATTTTGTCGGTCGTCGACTGAGCGTTTTCGACCT
CGCAGGCGCCGAAGGAGATTCAAAACTCCCGAGCGGGCTCTGCGCCCACG
TCCTCTCCATTGTTTAGTCAGCTGCTGTCGAGTGAAGCCCGACCTTTGCT
GCCGTCGATTTGTTGGATGCGTGCTGTGATTCCCCGAACTGTAGATTTGT
CGCAGAAATGGCGCCCGGCCGCGAGGTGTCCGACTACCGGCGGTTCGAGC
AGGCCTTCCTGAAAGGGCCGTTCGACGCGGCGAGGAACGGAGATGCAGAG
ACGCTGCGGCTTCTGCGATCTCACGGGTGGGAAGGAGCAGAGCAGAGCAG
AGCAGAGCGGAGCAGGGTGTAGCAGAGTAGAGCAGAGCAGAGCAGAGCAA
GCAGGGCATGGCAAAGCAGATCAGAACGGGGCAGAGTTGAGCTGAATAGC
GTCGAGGTAGAATACGAACGTTATCCCCTCCCCCTCCACACACACAAACA
GACGGGGTGCACGTCCTGGGTGTGGGTTGAACCAAAACCCCGCACAATTC
ATAGCAGCAAACTCCCGAGGTCTGTGGAAGGAGCCTGTCGGCCTTGTCCT
CACATGTTGTTTTCATGTTCTGTCGTGAGATCATCCCGCCAGGTGGGACT
GCTGGGAGACCGACAGACAAGGCCGCACGGCGCTGTTCTGGGCTGCCGGC
GGGGGGTCCGTCGAGGCCTGCACT
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:2396294..2399167+

>mRNA_P-fluviatile_contig11.1191.1 ID=mRNA_P-fluviatile_contig11.1191.1|Name=mRNA_P-fluviatile_contig11.1191.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2232bp|location=Sequence derived from alignment at P-fluviatile_contig11:2396294..2399167+ (Porterinema fluviatile SAG_2381)
ATGCCGAATATGGCCGCCGTTGTGGTCCTTGCAGCTATAGGTGGCGACCT
CATCAGGCGAGGCGAGACATTTTCGTTGCTGGCACCTGCCTCATTGGCCC
GAGCACATGACGTATACCAGTATTATTACCAGCACCGCAGAGGTCGCCCA
AGCAACTCCTGCCTGGACGGACACGACGCGGAGCGCGGGGAGAAGCAGCC
GAAGCGGGGATCGCGCCGTCAGAGGGGTTGGCACGATCCTACAAGACGTC
GACATTGCAGTACTAGCGGCGCATCCACGACATTGCGTTCCTCATCAAAC
CTAGCGGCGTCGGATGAACTCCCGGTCCTTGATGGAGTGCCGGGTGCTGC
TGCCGCGCCTTCGTCGTCGTCGTGGCCGAGCATCAGCGGCCGCCGCTCGA
GGCGCGGAAAGTACCCGGTTATCGAGTTATATCGGCGGGATGAAAGTAGC
ATCAATGAGGACGATGACGATGCTGGTGATGATCGTGATGATGGTGCGCT
CGACGGAATCTGCTTGCCGCCGCATGGTTCTCCCTCACGTCCCCCTCCTC
CTGCTGCTGCTGCTGCCGCGAGAGGAGAGCAGACGGCGATGGATCGCCTG
CGGTGGGTGCTGCGGCTAGGGCCGGAGCAGGTCGACCTGATGCTGGAGGC
GTTTCCGGCACTTGCGGACGTGCACCACAACAAGCTTGATTTGCAGCCGA
AGCTGATGCCGAATATGGCCGCCGTTGTGGTCCTTGCAGCTATAGGTGGC
GACCTCATCAGGCGAGGCGAGACATTTTCGTTGCTGGCACCTGCCTCATT
GGCCCGAGCACATGACGTATACCAGTATTATTACCAGCACCGCAGAGGTC
GCCCAAGCAACTCCTGCCTGGACGGACACGACGCGGAGCGCGGGGAGAAG
CAGCCGAAGCGGGGATCGCGCCGTCAGAGGGGTTGGCACGATCCTACAAG
ACGTCGACATTGCAGTACTAGCGGCGCATCCACGACATTGCGTTCCTCAT
CAAACCTAGCGGCGTCGGATGAACTCCCGGTCCTTGATGGAGTGCCGGGT
GCTGCTGCCGCGCCTTCGTCGTCGTCGTGGCCGAGCATCAGCGGCCGCCG
CTCGAGGCGCGGAAAGTACCCGGTTATCGAGTTATATCGGCGGGATGAAA
GTAGCATCAATGAGGACGATGACGATGCTGGTGATGATCGTGATGATGGT
GCGCTCGACGGAATCTGCTTGCCGCCGCATGGTTCTCCCTCACGTCCCCC
TCCTCCTGCTGCTGCTGCTGCCGCGAGAGGAGAGCAGACGGCGATGGATC
GCCTGCGGTGGGTGCTGCGGCTAGGGCCGGAGCAGGTCGACCTGATGCTG
GAGGCGTTTCCGGCACTTGCGGACGTGCACCACAACAAGCTTGATTTGCA
GCCGAAGCTGCGCTTCCTCCGCCAGACAATCGGCGGCGACGTGTCCATGG
TGGCCGTCTCCTTCCCTCAATTCTTCGGACACCCGCTGGAGAGGCACATC
GCCCCGAGACACGCCTTCCTCGTCGCGAGTGGCTGCCCATCAGCGCTTCC
TCCGCCAGACAATCGGCGGCGACGTGTCCATGGTGGCCGTCTCCTTCCCT
CAATTCTTCGGACACCCGCTGGAGAGGCACATCGCCCCGAGACACGCCTT
CCTCGTCGCGAGTGGCTGCCCATCAGGGGCGCGACTCCTCGAGGGCGGGT
GCCGAGGGCTGAGGCGGATGCTGGAGCTGCCAGCCAATAGGGGCGCGACT
CCTCGAGGGCGGGTGCCGAGGGCTGAGGCGGATGCTGGAGCTGCCAGCCA
ATAGATTTGTCGCAGAAATGGCGCCCGGCCGCGAGGTGTCCGACTACCGG
CGGTTCGAGCAGGCCTTCCTGAAAGGGCCGTTCGACGCGGCGAGGAACGG
AGATGCAGAGACGCTGCGGCTTCTGCGATCTCACGGATTTGTCGCAGAAA
TGGCGCCCGGCCGCGAGGTGTCCGACTACCGGCGGTTCGAGCAGGCCTTC
CTGAAAGGGCCGTTCGACGCGGCGAGGAACGGAGATGCAGAGACGCTGCG
GCTTCTGCGATCTCACGGGTGGGACTGCTGGGAGACCGACAGACAAGGCC
GCACGGCGCTGTTCTGGGCTGCCGGCGGGGGGTCCGTCGAGGCCTGCACT
GTGGGACTGCTGGGAGACCGACAGACAAGGCCGCACGGCGCTGTTCTGGG
CTGCCGGCGGGGGGTCCGTCGAGGCCTGCACT
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