mRNA_P-fluviatile_contig11.1188.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1188.1
Unique NamemRNA_P-fluviatile_contig11.1188.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig11.1188.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 2.910e-39
Identity = 83/153 (54.25%), Postives = 104/153 (67.97%), Query Frame = 2
Query:  986 SVYKA*AREGTEWVIRGVCGLTKTTEGAREMVSAFRTKSVAFCLPLSADELATVNSNRERAG--RPALEDTPGWRFLLPGKDREGYWGFAEFENQTIDIMDCIEVTQPGKEIAFEVDHSARHAKYLPEGLHVANMNIKHGGKQKVPRDSAMDD 1438
            S YKA AREG EWVIRGV GL K TEG  EMVS F+ +   F LP+S  +LA VN+ R+  G  +  L  +PG RFL  GK ++GYWG+ +FE Q  D+MD +E   P  +I FEVDHS+ H K   +GLHV+NMN+K+GGKQKV RDS M +
Sbjct:  275 SAYKAYAREGKEWVIRGVRGLRKKTEGPGEMVSGFQDERHGFGLPISDADLAAVNAKRDEEGNGKKPLTRSPGLRFLEYGKGKDGYWGYDQFEEQVEDVMDVLEHIDPDMQIVFEVDHSSGHGKQREDGLHVSNMNVKYGGKQKVLRDSVMTE 427          
BLAST of mRNA_P-fluviatile_contig11.1188.1 vs. uniprot
Match: A0A6H5KQB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB9_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.010e-38
Identity = 82/156 (52.56%), Postives = 104/156 (66.67%), Query Frame = 2
Query:  986 SVYKA*AREGTEWVIRGVCGLTKTTEGAREMVSAFRTKSVAFCLPLSADELATVNSNRERAG--RPALEDTPGWRFLLPGKDREGYWGFAEFENQTIDIMDCIEVTQPGKEIAFEVDHSARHAKYLPEGLHVANMNIKHGGKQKVPRDSAMDDAWV 1447
            S YKA AREG EWVIRGV GL K TEG  EMVS F+ +   F LP+S  +LA VN+ R+  G  +  L  +PG RFL  GK ++GYWG+  FE Q  D++D +E   P  +I FEVDHS+ H K   +GLHV+NMN+K+GGKQKV RDS M +  +
Sbjct:  120 SAYKAYAREGKEWVIRGVRGLRKKTEGPGEMVSGFQDERHGFGLPISDADLAAVNAKRDEEGNGKKTLTRSPGLRFLEYGKGKDGYWGYDLFEEQVEDVVDVLEHIDPDMQIVFEVDHSSGHGKQREDGLHVSNMNVKYGGKQKVLRDSVMTEGCL 275          
BLAST of mRNA_P-fluviatile_contig11.1188.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 2.000e-38
Identity = 77/154 (50.00%), Postives = 106/154 (68.83%), Query Frame = 2
Query:  986 SVYKA*AREGTEWVIRGVCGLTKTTEGAREMVSAFRTKSVAFCLPLSADELATVNSNRERAGRPALEDTPGWRFLLPGKDREGYWGFAEFENQTIDIMDCIEVTQPGKEIAFEVDHSARHAKYLPEGLHVANMNIKHGGKQKVPRDSAMDDAWV 1447
            SVYKA AREG EWV++GV GL K TEG  EMVSAF+ +   F LPL+ D L  VN+ R+  G+  L  +PG RFL  GK+++GYWG+ EF+ Q  D +D ++V +P  ++  E+DHS+ H +   +GLHV NMN+K+GGKQKV RD+ M +  +
Sbjct:  617 SVYKAYAREGKEWVVQGVRGLRKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQMEDALDVLDVFEPDMQVVVEIDHSSGHTRQREDGLHVGNMNVKYGGKQKVLRDTVMTEGCL 770          
BLAST of mRNA_P-fluviatile_contig11.1188.1 vs. uniprot
Match: A0A6H5KJF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF8_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 3.140e-36
Identity = 78/152 (51.32%), Postives = 105/152 (69.08%), Query Frame = 1
Query: 1438 CLGPGEAKLYLSGGKWNTKEPEAALKPRVLNLKPELGDVQRMSFGQTDAPPDYDWEAPPEDKRVQIRGKFEKNEGYVGKAKGIKRVLWERGWYVDGMSA---TSKDVKMNLEAVLVGLPDFKDERTALQHTIETRGHILVVSPKFHPEVAGM 1884
            CLGP EAK+Y + G+W+TK  E A+    ++ K  +G  Q  +F     PP ++W+AP +DK+   +GK +  EGY GKAKG+++ LWERGW+ DGMS     S D  M++E VL  LPDFK+ERTALQH +E+RGHIL+ SPK HPEVAG+
Sbjct:  165 CLGPEEAKMYFANGRWSTKFSEGAV---CVDQKLTVGQTQTSTFAVGAPPPFFEWDAPRKDKK-NAKGKVK--EGYEGKAKGVRQYLWERGWWKDGMSTGAGVSDD--MHVEKVLQALPDFKNERTALQHLVESRGHILLSSPKCHPEVAGV 308          
BLAST of mRNA_P-fluviatile_contig11.1188.1 vs. uniprot
Match: A0A6H5JVH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH4_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 9.910e-36
Identity = 78/152 (51.32%), Postives = 104/152 (68.42%), Query Frame = 1
Query: 1438 CLGPGEAKLYLSGGKWNTKEPEAALKPRVLNLKPELGDVQRMSFGQTDAPPDYDWEAPPEDKRVQIRGKFEKNEGYVGKAKGIKRVLWERGWYVDGMSA---TSKDVKMNLEAVLVGLPDFKDERTALQHTIETRGHILVVSPKFHPEVAGM 1884
            CLGP EAK+Y + G+W+TK  E A+    ++ K  +G  Q  +F     PP ++W AP +DK+   +GK +  EGY GKAKG+++ LWERGW+ DGMS     S D  M++E VL  LPDFK+ERTALQH +E+RGHIL+ SPK HPEVAG+
Sbjct:  139 CLGPEEAKMYFANGRWSTKFSEGAV---CVDQKLTVGQTQTSTFAVCAPPPFFEWHAPRKDKK-NAKGKVK--EGYEGKAKGVRQYLWERGWWKDGMSTGAGVSDD--MHVEKVLQALPDFKNERTALQHLVESRGHILLSSPKCHPEVAGV 282          
BLAST of mRNA_P-fluviatile_contig11.1188.1 vs. uniprot
Match: A0A6H5JUX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX8_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.370e-35
Identity = 74/154 (48.05%), Postives = 101/154 (65.58%), Query Frame = 2
Query:  986 SVYKA*AREGTEWVIRGVCGLTKTTEGAREMVSAFRTKSVAFCLPLSADELATVNSNRERAGRPALEDTPGWRFLLPGKDREGYWGFAEFENQTIDIMDCIEVTQPGKEIAFEVDHSARHAKYLPEGLHVANMNIKHGGKQKVPRDSAMDDAWV 1447
            S+YKA AREG EWV++GV GL K TEG  EMVSAF+ +   F LPL+ D L  VN+ R+  G+  L  +PG RFL  GK+++GYWG+ EF+ Q         V +P  ++  E+DHS+ H +   +GLHV NMN+K+GGKQKV RD+ M +  +
Sbjct:  466 SLYKAYAREGKEWVVQGVRGLRKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQVVVEIDHSSGHTRQREDGLHVGNMNVKYGGKQKVLRDTVMTEGCL 619          
BLAST of mRNA_P-fluviatile_contig11.1188.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.530e-33
Identity = 73/154 (47.40%), Postives = 99/154 (64.29%), Query Frame = 2
Query:  986 SVYKA*AREGTEWVIRGVCGLTKTTEGAREMVSAFRTKSVAFCLPLSADELATVNSNRERAGRPALEDTPGWRFLLPGKDREGYWGFAEFENQTIDIMDCIEVTQPGKEIAFEVDHSARHAKYLPEGLHVANMNIKHGGKQKVPRDSAMDDAWV 1447
            SVYKA AREG EWV++GV GL K TEG  EMVSAF+ +   F LPL+ D L  VN+ R+  G+  L  +PG  FL  GK+++GYWG+ EF+ Q         V +P  ++  E+DHS+ H +   +GLHV NMN+K+GGKQ V RD+ M +  +
Sbjct:  511 SVYKAYAREGKEWVVQGVPGLWKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLWFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQVVVEIDHSSGHTRQREDGLHVGNMNVKNGGKQTVLRDTIMTEGCL 664          
BLAST of mRNA_P-fluviatile_contig11.1188.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.070e-33
Identity = 78/152 (51.32%), Postives = 105/152 (69.08%), Query Frame = 1
Query: 1438 CLGPGEAKLYLSGGKWNTKEPEAALKPRVLNLKPELGDVQRMSFGQTDAPPDYDWEAPPEDKRVQIRGKFEKNEGYVGKAKGIKRVLWERGWYVDGMSA---TSKDVKMNLEAVLVGLPDFKDERTALQHTIETRGHILVVSPKFHPEVAGM 1884
            CLGP EAK+Y + G+W+TK  E A+    ++ K  +G  Q  +F     PP ++W+AP +DK+   +GK +  EGY GKAKG+++ LWERGW+ DGMS     S D  M++E VL  LPDFK+ERTALQH +E+RGHIL+ SPK HPEVAG+
Sbjct:  748 CLGPEEAKMYFANGRWSTKFREGAV---CVDQKLTVGQTQTSTFAVGAPPPFFEWDAPRKDKK-NAKGKVK--EGYEGKAKGVRQYLWERGWWKDGMSTGAGVSDD--MHVEKVLQALPDFKNERTALQHLVESRGHILLSSPKCHPEVAGV 891          
BLAST of mRNA_P-fluviatile_contig11.1188.1 vs. uniprot
Match: A0A6H5K769_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K769_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.550e-33
Identity = 79/175 (45.14%), Postives = 105/175 (60.00%), Query Frame = 1
Query: 1438 CLGPGEAKLYLSGGKWNTKEPEAALKPRVLNLKPELGDVQRMSFGQTDAPPDYDWEAPPEDKRVQIRGKFEK------------------------NEGYVGKAKGIKRVLWERGWYVDGMSATS--KDVKMNLEAVLVGLPDFKDERTALQHTIETRGHILVVSPKFHPEVAGM 1884
            CLGP EAK+YLS GKW+T+  E A    V ++K ++GD Q  +F     PP Y+W+AP +D +V  + K                            EGY GKAKG K+ LWERGW+ +GM+A+    D K N+E VL  L DF+ ERTALQ+ +E+RGHIL++SPK HPEVAG+
Sbjct:  116 CLGPEEAKMYLSNGKWSTEFTEGA---EVYDMKLKVGDTQTSTFAAGSPPPFYEWDAPRKDVKVARKAKXXXXXXXXXXXXDVAADGAGTKPRDKIKEGYEGKAKGSKQYLWERGWWKEGMNASVGIADEK-NVEKVLQALTDFESERTALQYLVESRGHILLLSPKCHPEVAGV 286          
BLAST of mRNA_P-fluviatile_contig11.1188.1 vs. uniprot
Match: A0A6H5L5X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X3_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 4.890e-32
Identity = 69/149 (46.31%), Postives = 97/149 (65.10%), Query Frame = 2
Query:  992 YKA*AREGTEWVIRGVCGLTKTTEGAREMVSAFRTKSVAFCLPLSADELATVNSNRERAGRPALEDTPGWRFLLPGKDREGYWGFAEFENQTIDIMDCIEVTQPGKEIAFEVDHSARHAKYLPEGLHVANMNIKHGGKQKVPRDSAMDD 1438
            + A AREG EWV++GV GL K TEG  EMV AF+ +   F LPL+ D L  VN+ R+  G+  L   P  RFL   K+R+GY G+ EF+ Q  D++D + V +P  ++  E+DHS+ H +   +GLHV NMN+K+GGKQKV RD+ + +
Sbjct:  418 FSAYAREGKEWVVQGVRGLRKKTEGPGEMVPAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTQRPDLRFLQYWKNRDGYRGYDEFKEQIEDVLDVLNVFEPDMQVVVEIDHSSGHTRKREDGLHVGNMNVKYGGKQKVLRDTVITE 566          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXL0_9PHAE2.910e-3954.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQB9_9PHAE1.010e-3852.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2T4_9PHAE2.000e-3850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJF8_9PHAE3.140e-3651.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVH4_9PHAE9.910e-3651.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX8_9PHAE1.370e-3548.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN6_9PHAE1.530e-3347.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L611_9PHAE2.070e-3351.32Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K769_9PHAE2.550e-3345.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5X3_9PHAE4.890e-3246.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:2341803..2345848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2583
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1188.1prot_P-fluviatile_contig11.1188.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 2342858..2343310 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815464.751093-UTR-P-fluviatile_contig11:2341802..23428571622815464.751093-UTR-P-fluviatile_contig11:2341802..2342857Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2341803..2342857 -
1693561924.4501011-UTR-P-fluviatile_contig11:2341802..23428571693561924.4501011-UTR-P-fluviatile_contig11:2341802..2342857Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2341803..2342857 -
1622815464.782613-UTR-P-fluviatile_contig11:2343310..23436961622815464.782613-UTR-P-fluviatile_contig11:2343310..2343696Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2343311..2343696 -
1693561924.4674053-UTR-P-fluviatile_contig11:2343310..23436961693561924.4674053-UTR-P-fluviatile_contig11:2343310..2343696Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2343311..2343696 -
1622815464.802932-UTR-P-fluviatile_contig11:2343958..23441121622815464.802932-UTR-P-fluviatile_contig11:2343958..2344112Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2343959..2344112 -
1693561924.4750164-UTR-P-fluviatile_contig11:2343958..23441121693561924.4750164-UTR-P-fluviatile_contig11:2343958..2344112Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2343959..2344112 -
1622815464.8172355-UTR-P-fluviatile_contig11:2345313..23458481622815464.8172355-UTR-P-fluviatile_contig11:2345313..2345848Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2345314..2345848 -
1693561924.4829826-UTR-P-fluviatile_contig11:2345313..23458481693561924.4829826-UTR-P-fluviatile_contig11:2345313..2345848Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2345314..2345848 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815464.7648883-CDS-P-fluviatile_contig11:2342857..23433101622815464.7648883-CDS-P-fluviatile_contig11:2342857..2343310Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2342858..2343310 -
1693561924.4591017-CDS-P-fluviatile_contig11:2342857..23433101693561924.4591017-CDS-P-fluviatile_contig11:2342857..2343310Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2342858..2343310 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1188.1

>prot_P-fluviatile_contig11.1188.1 ID=prot_P-fluviatile_contig11.1188.1|Name=mRNA_P-fluviatile_contig11.1188.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=151bp
MVSAFRTKSVAFCLPLSADELATVNSNRERAGRPALEDTPGWRFLLPGKD
REGYWGFAEFENQTIDIMDCIEVTQPGKEIAFEVDHSARHAKYLPEGLHV
ANMNIKHGGKQKVPRDSAMDDAWVQARRSCISVGASGTRRNPKLRSNREC
*
back to top

mRNA from alignment at P-fluviatile_contig11:2341803..2345848-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1188.1 ID=mRNA_P-fluviatile_contig11.1188.1|Name=mRNA_P-fluviatile_contig11.1188.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4046bp|location=Sequence derived from alignment at P-fluviatile_contig11:2341803..2345848- (Porterinema fluviatile SAG_2381)
GAAGGCAAAACAGCGTTATCTGTTGCGATAGCACACCTAACAGGCCGAAA CATGAAACCGTGATGTAGGAAGACGTGAGAGCGTGAAAGAGAGCACGGGC GAGAAAGGAGCGAGCGCGCGCGAAACATAAGAGACAGACATATAACGTCC GCATACTCACACGTCGTCCCGAACAAATTCGGAACATGCACGCAAGCCCT CTCCGCTTGAAGCTTCGAGGGCTTCGGGCTCAAGCCCCCGCAGTGACGCG AATTTGTACGTTGGTAAGGCAGCCCGCGCAGCCCTTGTAAGCGTTCGTGT TCATGTCCTTCACTTTGGTTTCCCGCCAGCGCGCGGCCTTCGATGTTACC TGGTGGGATCTACGATTCTACACCAGCACGTCATGACATCATGTTCCTTC CAGAGTTTTTTTGGGCGCCGGGCACAGCGTTGGTTACCCCTCAAGAGAGG CAGCGCAAGGATCGCAGCACGTGTGTACCAGTCCCAGTCACCTCGTTCTG ACGGAGAGAGCGCCCACAGTCCGACTGGTTTAGAGGTATAGTAGCAATTA ACCCACCCATCTACACGAGAGAAGACCCCGGCTAGTTACTTCCTCAACAC AAACATACCTCCATCGCGTTTCCACCACCGCTCTCTTCAGCGTACACACG TCCTTTCTGTACCTCCGTCTCGTCCTTCTCCAATCTCCTTTTCACTCTCT TTCTCTCTCTCGCTATCTCTCTCTCTCTCTTTCCCTCGTTCTTGGTAGCA AGGCGAGGAGGCAGGATAGAGCTGAGGGGAATGATGCGCGCGTGTGATGT GTAACTCAGGCGCTTAGGATGGAAATAACCCGACCCTTTTGGGAAATCAG CCGAGATGGAGGTAGAGAGGGCCGGCGGGGATAGAGGGAGAAGGAGCGAG ATTTCGTGGTTCTTCGATGAAAAACCGGATTCTTTTTCGGCAATTCGTAT TCTTTATCTCTTGTTCCTCGATTTTGGGAATTTGGGTCAAAGGTGTATTT ATTGCGCCTTTGATATCGGGTGAGATGGGTCCACTTACCATTTTTATCAT TTGTCCCTTGGTCATGAGTGTACCTGTGGCGAGAGAGAGACTGCCCAATG ATAGCAACACCACACGCACGACATTCGAAAGAGATAGAGTGCCGACCCGC TCGCTAGAAACATGTTTTGTAAGAAATTGAAACTAAGATTTTTGACAGAA AGTAGTGATCGAAAAATTGAGGACCACATACAAGCTGGGCCAGGTAAGAG ACCCAGAAAGTGTCAGATGCTCATAACTCAGTGCTGCTCGTCTTTTCTCT CGCTACAAGCTTCGCTGCAGTTGTGGAACGGAGGCGCACAGGCTTCAGGT TGAAAGAGGCTGATTCCATTTCTACCGGCAAATGCAGGACTTTTAGCCAA TCACAGAGCACAAAAATGCGGCGCACAATGGGTGGAACCATTATCTTATC AACTTATCAACCATCATTTTATTTTTATGTTTTTTAAATTTGACATTTCA AGCCGCATTTCCGCTTTCTTGGTGAGCAAGCCACAACAGCAGCACAGCAG ACACAAGTAAAGAACACAGCAGCACGGAGGATGAGCACAGTAGTCCCTTC CTAGTGCCGCTGTGCCATGAAGTGGGAGTGAACATCTCGATAAAAATGTA AGTAAGACAGTGGCGGCTAAAAATGCGGTTCGCCGGCAAGAAGAAACCTG TCCCGGCGCAATCAGCCTACTTTTACACTGAAAAAGGCAGCAGAGGACTG GTGGATGTTGAGCTGGGAACAAGGTTACAGGGGCAAGAAGGTGGACACCG ACGCACAACCTGGTGAAGAATCGGCAGACAAAATTCTCCCTCAAGGCGAG TTCAACCTGTCCCTGCTGCGGTGTGACTGCTGTGAGACATGTGAGACTGC AACTGTAAGTGACGGCTGAAGACTGCAACTGTAAAAACATGTATTCTGCT GTAAGGCCGTGTCTTAACATCCTACTGTACGTGTACAGGAACATTGCTTC CGAATTGTGATCAGATCTCCCTGGTTCAAGTCTTCGTTGTATTTTTCTGG CACAAAATGATGCTGCACCCACACCGAGTCGCCCGTTGCTGATTTTATTT TACTTGACCCAGCTCCACACCCACTGGCCGCCCCCGAAATTGTGCGGAAC AGGTAAATCGCCACGAAGCCTGGGTATCTGAACGCAGTGCAACTGCGTCG GTACAAGAAGCACCGTTCCGAAGGAGGGGGGCTCTCCCCCGCGGATTGGA TAAAGCCGACGCTTCCGACGGAGCGACAGAAGAGGTGTCCTTCCCGAGGA TGGACCAGAAGCCAGGCAAGGCTGAACAAGAAAGCCGGCAACCGGCTGGC GTATCTCAAGTATACGGTGGGGCAGGTGGAAGAGCGGCGGAAGAAATATT CAAGGTATACAGGTGCCGTCAACCCCCGTACCACATCGGGCAGGACGAAG CGTTTACAAGGCCTAAGCTCGAGAGGGAACAGAGTGGGTGATCAGGGGAG TGTGTGGCTTGACAAAAACGACAGAGGGTGCAAGGGAGATGGTGTCCGCG TTCAGGACGAAAAGCGTGGCTTTTTGTCTTCCTCTGTCGGCGGATGAGCT CGCAACCGTCAACAGCAATCGTGAGCGTGCGGGTCGCCCCGCCCTGGAGG ACACCCCTGGGTGGCGGTTCCTACTTCCCGGGAAGGACAGGGAAGGATAC TGGGGGTTTGCAGAGTTCGAGAATCAGACGATCGACATCATGGACTGCAT CGAGGTGACCCAGCCAGGAAAGGAGATTGCATTCGAGGTTGATCACTCTG CGAGGCACGCAAAGTACCTGCCGGAGGGTTTGCACGTCGCAAATATGAAT ATCAAGCACGGAGGGAAGCAAAAGGTGCCTCGAGATAGTGCCATGGATGA TGCTTGGGTCCAGGCGAGGCGAAGTTGTATCTCAGTGGGGGCAAGTGGAA CACGAAGGAACCCGAAGCTGCGCTCAAACCGAGAGTGTTGAATCTGAAGC CCGAGCTCGGTGATGTGCAGCGGATGTCTTTCGGCCAAACGGACGCTCCC CCTGATTATGATTGGGAGGCGCCGCCGGAGGACAAGCGGGTTCAGATCCG GGGCAAGTTCGAGAAGAACGAAGGGTACGTGGGGAAGGCGAAGGGGATAA AGCGGGTGCTGTGGGAACGTGGGTGGTATGTCGACGGGATGTCAGCCACC TCGAAGGACGTCAAGATGAACTTGGAGGCGGTCCTGGTCGGTCTTCCCGA TTTCAAGGACGAACGGACAGCCCTGCAACACACAATAGAAACACGGGGGC ATATTTTGGTGGTGTCGCCCAAGTTTCACCCAGAGGTAGCTGGCATGGCG GCATCGAGTACTCCCGGGGAATGTCGCAACTCATATTCCGGCGGGAGCTT AACGACGAGATTCCAAAGCACCTTCACCTAAACATCGTTGCGTCCATGAA CCGGGAATCGATTTTAGGCCTGCCGCGGGCTCGTCGCTTTGCACGCCGCA CTCGAGACTACTGCCGGGCGTACTTGAGGCTCGAGAAGGTTCCGCAAGGA GCTGAATGCAAGGACAGCATCGACAGAATGCGCAAGACCTGTAAAGCTCA CCGCATCATCATCGACATGGAGCCGGATTTTATGGACAAGCAGTTAAATA TTTGCGCCGCCAAAGTAGCTCTTGTACTTGTAGTGTAGGGTGGTTACAGG CATCTTGCTTCACTTTTCGTGGGGGCATGAAGGGAGAGGGAGAGAGGCTG GGGTAGCGTAAACGTCGGTGTGTTCACGATCGGACTTGGCTCTAAAAAAA TCTTGGACGTAATAATTCGTGTTTGGCGACATCTGCGGTGGCTTGCGTGG ACGACGAACAATTAAAGCACAAAAAACAAAGAGAGCATGGTTAATGCTAG AAGAGAGTACGCACGCGCCGTCTACGGCCATCGGTTCACCGAATTCATGC TCTCTCTTCATCAACCTCATCCCTCGGGTACATGTCATGGCGACACAAAT TTTGGACCTTTTCCTCCCCTCAACGGTGCTCCCGGGATTTCGTCGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig11:2341803..2345848-

>mRNA_P-fluviatile_contig11.1188.1 ID=mRNA_P-fluviatile_contig11.1188.1|Name=mRNA_P-fluviatile_contig11.1188.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=906bp|location=Sequence derived from alignment at P-fluviatile_contig11:2341803..2345848- (Porterinema fluviatile SAG_2381)
ATGGTGTCCGCGTTCAGGACGAAAAGCGTGGCTTTTTGTCTTCCTCTGTC
GGCGGATGAGCTCGCAACCGTCAACAGCAATCGTGAGCGTGCGGGTCGCC
CCGCCCTGGAGGACACCCCTGGGTGGCGGTTCCTACTTCCCGGGAAGGAC
AGGGAAGGATACTGGGGGTTTGCAGAGTTCGAGAATCAGACGATCGACAT
CATGGACTGCATCGAGGTGACCCAGCCAGGAAAGGAGATTGCATTCGAGG
TTGATCACTCTGCGAGGCACGCAAAGTACCTGCCGGAGGGTTTGCACGTC
GCAAATATGAATATCAAGCACGGAGGGAAGCAAAAGGTGCCTCGAGATAG
TGCCATGGATGATGCTTGGGTCCAGGCGAGGCGAAGTTGTATCTCAGTGG
GGGCAAGTGGAACACGAAGGAACCCGAAGCTGCGCTCAAACCGAGAGTGT
TGAATGGTGTCCGCGTTCAGGACGAAAAGCGTGGCTTTTTGTCTTCCTCT
GTCGGCGGATGAGCTCGCAACCGTCAACAGCAATCGTGAGCGTGCGGGTC
GCCCCGCCCTGGAGGACACCCCTGGGTGGCGGTTCCTACTTCCCGGGAAG
GACAGGGAAGGATACTGGGGGTTTGCAGAGTTCGAGAATCAGACGATCGA
CATCATGGACTGCATCGAGGTGACCCAGCCAGGAAAGGAGATTGCATTCG
AGGTTGATCACTCTGCGAGGCACGCAAAGTACCTGCCGGAGGGTTTGCAC
GTCGCAAATATGAATATCAAGCACGGAGGGAAGCAAAAGGTGCCTCGAGA
TAGTGCCATGGATGATGCTTGGGTCCAGGCGAGGCGAAGTTGTATCTCAG
TGGGGGCAAGTGGAACACGAAGGAACCCGAAGCTGCGCTCAAACCGAGAG
TGTTGA
back to top