mRNA_P-fluviatile_contig11.1083.1 (mRNA) Porterinema fluviatile SAG_2381
|
Overview
Homology
BLAST of mRNA_P-fluviatile_contig11.1083.1 vs. uniprot
Match: D7FXX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX3_ECTSI) HSP 1 Score: 342 bits (878), Expect = 9.920e-105 Identity = 180/212 (84.91%), Postives = 188/212 (88.68%), Query Frame = 1
Query: 1 MASAVDKVQVRLQEAMEQGNQASLGQAIDASKGMNGLKQLRRSAKARLKQLSADQNRSMIGSSSPIQQPSQA---PLTWRTSEQQGGRYRAVAHLPTSIIGWVIGHKGCNARMLKQQTGTELWVDVPGQCVIIESRAAQEVEGGMEAVNDFVMTAPTFIAKVQSGGGDGITQTVQCPVHLLPSIQRLSRKIQVESGANCVFANCKMSTFCVT 627
MASAVD+VQ+RLQEAM+QGNQASLGQAIDASKG+NGLKQLRRSAKARLKQLSADQNRSMIGS QQ Q PLTWRTSEQ GGRYRAVAHLPTSIIGWVIGHKGCNARMLKQQTGTELWVDVPGQCVI+ESRA QEVEG ME VNDFV TAPTFIAK QS G G+TQTVQCPV+LLPSIQRLSRKIQ ESGANCVFANCK+ F T
Sbjct: 1 MASAVDRVQMRLQEAMDQGNQASLGQAIDASKGVNGLKQLRRSAKARLKQLSADQNRSMIGSRMQQQQHQQTTEEPLTWRTSEQ-GGRYRAVAHLPTSIIGWVIGHKGCNARMLKQQTGTELWVDVPGQCVIVESRAIQEVEGAMETVNDFVKTAPTFIAKAQSTSGGGVTQTVQCPVNLLPSIQRLSRKIQAESGANCVFANCKVRPFSTT 211
BLAST of mRNA_P-fluviatile_contig11.1083.1 vs. uniprot
Match: A0A6H5KRR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRR8_9PHAE) HSP 1 Score: 229 bits (585), Expect = 4.230e-66 Identity = 109/125 (87.20%), Postives = 114/125 (91.20%), Query Frame = 1
Query: 244 QGGRYRAVAHLPTSIIGWVIGHKGCNARMLKQQTGTELWVDVPGQCVIIESRAAQEVEGGMEAVNDFVMTAPTFIAKVQSGGGDGITQTVQCPVHLLPSIQRLSRKIQVESGANCVFANCKMSTF 618
+GGRYRAVAHLPTSIIGWVIGHKGCNARMLKQQTGTELWVDVPGQCVIIESRA QE+EG ME VN+FV TAPTFIAK QS G G+TQTVQCPVHLLPSIQRLSRKIQ ESGANCVFANCK+ F
Sbjct: 3 KGGRYRAVAHLPTSIIGWVIGHKGCNARMLKQQTGTELWVDVPGQCVIIESRAIQELEGAMETVNNFVKTAPTFIAKAQSTSGGGVTQTVQCPVHLLPSIQRLSRKIQAESGANCVFANCKVRPF 127
BLAST of mRNA_P-fluviatile_contig11.1083.1 vs. uniprot
Match: D7FXX2_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX2_ECTSI) HSP 1 Score: 154 bits (388), Expect = 2.080e-39 Identity = 101/140 (72.14%), Postives = 111/140 (79.29%), Query Frame = 1
Query: 1627 FLEKSAGAGNTQGGENEHDADERRTSSCGSDEYGGGEAQGFP-HHSRQPGSVGSLGVGXXXXXXXXXXXXXXXXXXXVGCPLEGTIDELLTELGLEKYLHIFHEAEVDLATLYVLSEQDFRELGILKGPRVKIMHHIGSR 2043
FLE+SAG ++ G DERRTSSCGS ++GGGEA GFP HHSRQPGSVGSLG GXXXXXXXXXXXXXXX GTIDELL E+GL KY+ +F EAEVDLATL ++SEQDFRELGILKGPRVKIMHHIGSR
Sbjct: 18 FLEESAGGAGSRLGYERDGEDERRTSSCGSGDFGGGEASGFPPHHSRQPGSVGSLGAGXXXXXXXXXXXXXXXRGP------RGTIDELLDEIGLMKYVDVFREAEVDLATLCIMSEQDFRELGILKGPRVKIMHHIGSR 151
BLAST of mRNA_P-fluviatile_contig11.1083.1 vs. uniprot
Match: A0A6H5L4F3_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4F3_9PHAE) HSP 1 Score: 140 bits (352), Expect = 2.620e-33 Identity = 153/257 (59.53%), Postives = 165/257 (64.20%), Query Frame = 1
Query: 1276 PPHTVLDPSHYLNPSLNPANSSPAAPGGNIAPFHASTP-TPTXXXXXXXXPLSDLSFFSFGVGGINSSTTASXXXXXXXXXXXXXXXXXXXMAAAGGGDGGAXXXXXXXXXXXXXXXXFLEKSAGAGNTQGGENEHDADERRTSSCGSDEYGGGEAQGFPHHSRQPGSVGSLGVGXXXXXXXXXXXXXXXXXXXVGCPLEGTIDELLTELGLEKYLHIFHEAEVDLATLYVLSEQDFRELGILKGPRVKIMHHIGSR 2043
PPHT L PSHY S+PA PGG APF S+ TP XXXXXX DLSFFSFGVGG + XXXXXXXXXXXXXXXXXX XX XXXXXXX FLE+SAG ++ G E D D+ +PGSVGSLG GXXXXXXXXXXXXXXXX GCPLEGTIDELL E+GL KYL +F EAEVDLATL ++SEQDFRELGILKGPRVKIMHHIGSR
Sbjct: 30 PPHTELAPSHY-------PLSAPATPGGTAAPFQGSSAATPVGGXXXXXXXXXDLSFFSFGVGGASPPAPQGGXXXXXXXXXXXXXXXXXXXXXX---XXXXXXTPXXXXXXXLPGLGFLEESAGGAGSRLGY-ERDGDD------------------------EPGSVGSLGAGXXXXXXXXXXXXXXXXA--AGCPLEGTIDELLDEIGLIKYLDVFREAEVDLATLCIMSEQDFRELGILKGPRVKIMHHIGSR 249
BLAST of mRNA_P-fluviatile_contig11.1083.1 vs. uniprot
Match: D7FQB1_ECTSI (SAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB1_ECTSI) HSP 1 Score: 68.2 bits (165), Expect = 1.120e-7 Identity = 42/145 (28.97%), Postives = 69/145 (47.59%), Query Frame = 1
Query: 250 GRYRAVAHLPTSIIGWVIGHKGCNARMLKQQTGTELWVDVPGQCVIIESRAAQEVEGGMEAVNDFVMTAPTFIAKVQSGGGDGITQTVQCPVHLLPSI--QRLSRKIQVESGANCVFANCKMSTFCVTGDRRNVDTAVAMLKRLI 678
G R + ++GWVIG G + +K +TG +WVD + I VE ++V+ +V AP V++ +T+T++CP LL + + +I E+ A V N K+ V GD R+VD A ++ +I
Sbjct: 60 GFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAA----VTKTIECPPQLLDDLGDRTTIARIVKETHAQ-VVVNKKIGRIIVRGDHRSVDLAYESVRAMI 199
BLAST of mRNA_P-fluviatile_contig11.1083.1 vs. uniprot
Match: UPI0019D4F046 (uncharacterized protein LOC120642350 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D4F046) HSP 1 Score: 57.8 bits (138), Expect = 9.780e-5 Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1
Query: 1876 TIDELLTELGLEKYLHIFHEAEVDLATLYVLSEQDFRELGILKGPRVKIMHHIG 2037
T+ ELL+ LGLEKYL +F EVD+A L + E D +++G+ GPR KI+ IG
Sbjct: 291 TVTELLSSLGLEKYLVLFQAEEVDMAALRQMGESDLKDMGVPMGPRKKILLAIG 344 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig11.1083.1 >prot_P-fluviatile_contig11.1083.1 ID=prot_P-fluviatile_contig11.1083.1|Name=mRNA_P-fluviatile_contig11.1083.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=682bp MASAVDKVQVRLQEAMEQGNQASLGQAIDASKGMNGLKQLRRSAKARLKQback to top mRNA from alignment at P-fluviatile_contig11:1155880..1165124- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig11.1083.1 ID=mRNA_P-fluviatile_contig11.1083.1|Name=mRNA_P-fluviatile_contig11.1083.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=9245bp|location=Sequence derived from alignment at P-fluviatile_contig11:1155880..1165124- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig11:1155880..1165124- >mRNA_P-fluviatile_contig11.1083.1 ID=mRNA_P-fluviatile_contig11.1083.1|Name=mRNA_P-fluviatile_contig11.1083.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=4092bp|location=Sequence derived from alignment at P-fluviatile_contig11:1155880..1165124- (Porterinema fluviatile SAG_2381)back to top |