mRNA_P-fluviatile_contig11.1062.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1062.1
Unique NamemRNA_P-fluviatile_contig11.1062.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.1062.1 vs. uniprot
Match: A0A6H5JSK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK6_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 4.430e-24
Identity = 96/231 (41.56%), Postives = 119/231 (51.52%), Query Frame = 2 
Query:   68 MPSPEGSPLEWFARLPIFSWMQGQARPQ-GQAKRAACGPPSEEVDMKTTQQTATRQQQRRLAKAPPKLCTREESPIPPTAPVSTCDSSAVGASWSEQA-VVGSSDSAAAEAGDMMAFHRLSSGGGSNGSGGCGQQQLTLTLDAAP---------VDSAPS-ALPVDIPWRLVDPDSATTPMQEALSHSLAQMELRMSGRXXXXXXXRTSHASSNTSTPHHHRRTQSSLPAS 724
            MPSPE   LE  A+ P+F WM+ + R +        CG               +    R+L    P+L   E + +  TAP+STC S+    SWSEQ  VVGSSDS+   +G M AF RL       G     + +L +    AP         V  AP+ A P+DIPWRL+DPDSATTPMQEAL+HSL QMELRMSGR       + S A         HRRTQS+LP S
Sbjct:    1 MPSPERPLLETIAKFPLFDWMRPKPRREVAPGDGHHCGSSDFGSSSSNNNAAVSTCSPRKLRT--PRLSAEESTLLSRTAPISTCTSNISAVSWSEQTTVVGSSDSSTGASG-MAAFPRL-------GHKSSPELKLDIVAGDAPAAVLETRLTVAPAPTPAPPMDIPWRLLDPDSATTPMQEALNHSLGQMELRMSGRHTT----KNSTACRRKDYSQFHRRTQSALPVS 217
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSK6_9PHAE4.430e-2441.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:937652..942056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_004600.1
Exons2
Model size2937
Cds size729
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1062.1prot_P-fluviatile_contig11.1062.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 937719..939915 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815444.8951542-UTR-P-fluviatile_contig11:937651..9377181622815444.8951542-UTR-P-fluviatile_contig11:937651..937718Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 937652..937718 +
1693561875.3067505-UTR-P-fluviatile_contig11:937651..9377181693561875.3067505-UTR-P-fluviatile_contig11:937651..937718Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 937652..937718 +
1622815444.9287558-UTR-P-fluviatile_contig11:939915..9420561622815444.9287558-UTR-P-fluviatile_contig11:939915..942056Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 939916..942056 +
1693561875.3295643-UTR-P-fluviatile_contig11:939915..9420561693561875.3295643-UTR-P-fluviatile_contig11:939915..942056Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 939916..942056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815444.9063256-CDS-P-fluviatile_contig11:937718..9382311622815444.9063256-CDS-P-fluviatile_contig11:937718..938231Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 937719..938231 +
1693561875.31392-CDS-P-fluviatile_contig11:937718..9382311693561875.31392-CDS-P-fluviatile_contig11:937718..938231Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 937719..938231 +
1622815444.915951-CDS-P-fluviatile_contig11:939699..9399151622815444.915951-CDS-P-fluviatile_contig11:939699..939915Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 939700..939915 +
1693561875.3218112-CDS-P-fluviatile_contig11:939699..9399151693561875.3218112-CDS-P-fluviatile_contig11:939699..939915Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 939700..939915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1062.1

>prot_P-fluviatile_contig11.1062.1 ID=prot_P-fluviatile_contig11.1062.1|Name=mRNA_P-fluviatile_contig11.1062.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=243bp
MPSPEGSPLEWFARLPIFSWMQGQARPQGQAKRAACGPPSEEVDMKTTQQ
TATRQQQRRLAKAPPKLCTREESPIPPTAPVSTCDSSAVGASWSEQAVVG
SSDSAAAEAGDMMAFHRLSSGGGSNGSGGCGQQQLTLTLDAAPVDSAPSA
LPVDIPWRLVDPDSATTPMQEALSHSLAQMELRMSGRTSGRHSTRTSHAS
SNTSTPHHHRRTQSSLPASGWAGAADGGSGSGGSEAPSSFSS*
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mRNA from alignment at P-fluviatile_contig11:937652..942056+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1062.1 ID=mRNA_P-fluviatile_contig11.1062.1|Name=mRNA_P-fluviatile_contig11.1062.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4405bp|location=Sequence derived from alignment at P-fluviatile_contig11:937652..942056+ (Porterinema fluviatile SAG_2381)
CCAAGCAGGGAAGAACGCACTCAGCCCTGTACGCACAAGTTTCCCCCCCC
TGGCCGCGACTGTCAAAATGCCGAGCCCTGAGGGTTCCCCGCTTGAGTGG
TTTGCTAGACTCCCCATTTTCAGCTGGATGCAAGGACAAGCACGCCCACA
AGGACAGGCAAAGCGCGCTGCTTGTGGTCCTCCCAGCGAGGAAGTTGACA
TGAAAACAACCCAACAAACAGCGACGCGACAGCAGCAGCGCCGCCTCGCG
AAGGCGCCCCCGAAGCTCTGCACACGAGAGGAGAGCCCCATCCCCCCGAC
CGCGCCCGTCAGCACGTGCGATTCTTCAGCGGTAGGCGCGTCCTGGTCAG
AACAGGCGGTGGTGGGCAGCAGCGATTCGGCGGCAGCGGAAGCGGGAGAT
ATGATGGCTTTCCATCGATTAAGCAGCGGCGGAGGCAGCAACGGCAGCGG
GGGCTGCGGGCAGCAGCAGCTCACGCTCACGTTGGATGCCGCACCTGTCG
ATTCCGCCCCCTCCGCGCTCCCGGTGGACATTCCTTGGAGGCTTGTCGAC
CCAGATTCCGCGACGACGCCAATGCAGGAGGTGAAAACTTGTGTGTGCTT
TCCTGGTCTTTCCGTCCTCGAAGCGCCAATGGTCCGTCCACATTGAAATA
TTTAATTTTTGCAGCATCGGAGAATTCCAGACTTCCCTTGCCTTTTTTCT
TTGTTCTTCCCCCCCCTGTCCTGTTCTTTCCTTCTCGTGCATGCTACCCT
CGAGTGCACTCCCTCCCTCATGTACTCGAGTCCACTCTATTGGCACAGCG
CACTCCACGCGAAAGCAAGACGGAATTGCAGTGTGTCCAACGGTTCGGGG
GCTGGACACGGTGGAAATCGTTGCGCGCACGCCCATGGGCTGCGTTGTTT
CGCCGCTCGCCGTTGATGCCAATTTTTCCTGTTAGCCGAGATAAAACGTG
TGCCCTATCGTCTTCCCCTGTGCGCGAACACCGCTGGGTCCTACTTTTGC
GCTCCATCCACTGCGCCTTATCCCCGCTGTTTTGCGATGAAGTGTAGCCC
TCGGGTGGAACTTCAACTGTTCTGCGTCATCGCCACGTGCTGGGAGGGGG
GGGTGAGATTGGTGTAGGAATTTCAAGTATGAATGTCCGAAGTAAGTTAT
TTGCCCCACGTTTTGGAAGTATCCAACCAACCAAAGAGGCGGCGGGGAAC
GAAAAGTCGCCCCGCATCACTTGGTGATTGGATGCCATGCCCACAGATGT
GCTGTGCTCCCCTCCTCCACGATTGCACTACTCAAGGCTGCGATGTGCTT
GCATCCTCTCTGGCGCCCAACGTTGCCATGGTACAGTCCTCTCGCCCTTC
CCCTGCCATCACGTACAAGCACTTTCTCTCTTTCAACGGAACGACGCCGC
TCTGGCCTTTGACGATAGTCACCCCGCGTGTTCACACACACACGTCTGGC
TGGCTGTGGCAACAATTGGCACCAACCAACTTTGAAGAGGCCGAAAGACG
ACTTCCTCTCGCGTGCGATCACGCTGATTTTTCACGATGCGTTTGCGTAG
CGACCCCTTGACCCTTGCGCACCACTCTTGCTACGTGTATGATCGTTTTT
TGTTTTTTCACGCCCTTTGAAGCTTCGTTCGTGGTCTCCTCTGCGCCCAC
ACCAACCCCAGAAGCAGCCCACCCACGAGAGTGGGGCCACTGCTATGACC
CACGACTCTCCCCCACAGTATCAAATCGAACGGCAATAACGCGCATTACG
CAAGCAGCCACTATCATGCGAGTTAGCGCCCTGCTGCGAATAGCACGGCC
GTGGGAGTGTGGCCAGAGGGTGGGTAGCGTGGACGAAAAGTTCTCTCTTG
TTCTTCCCAAACGACCCACGCCATGATCTATTTTTCCCGTTGACATTTGT
CTCACCACATGCACATGGATGTGGGGAAACGTCGTAAATGCATCACACAA
CAGCAAAAAATGCATCTGCAACCGTTACGAGGTCTGTCGCTCCCTCATCC
TTACTCTCACCCTTATCCCTCGTTTCACGTGACTGCTTTATCGATTAGGC
GCTTTCCCACTCCTTGGCGCAAATGGAGTTGCGAATGTCTGGCCGGACGT
CCGGTAGGCACTCCACCAGGACCTCCCACGCTAGCAGCAACACCTCCACT
CCCCACCACCATCGCCGCACACAATCATCCCTGCCGGCGAGCGGTTGGGC
CGGGGCGGCCGACGGTGGCAGCGGCAGCGGCGGAAGCGAAGCTCCCTCGT
CGTTTTCAAGCTAATCCCGCCACCGCCGCCGGCGGCGAAGTCTCCCGACG
TTCGAACTCCTTGCAGTGGAGTAGGGAGCCGCAGGGTGCGGGGGGGCTTC
GAAGGTTACTTTCCTGCTGCCTCGGATTCAGTTTCTTCTTCGGCGGCAAC
AGCTGCTGCGGCTGCTTTAGCGGCTGCTGCTGGTGCTTCTTCCCCCGTCT
CCGCTGAGGTTATCCGCACGCCGAGGCCGTTCGCCGTTGACTCGGACGAG
GCGATTCAGGAGGAGGAGGTGACAAAAGACGCCGAAGACGATGATCACGA
TGGCGGCCATGCCGTGCGTGATGGTGACAGCGAAGGCGTTGGCGATGATG
ACATGATCTTCGACTTTGAGGACCCTTGATTTGCAGGCGAGAAGGGGTTG
AAGTGGGCAAGGTTCGTTTTGCCTCGATGTGTTGACATTTTTATGTTCGG
AGAAGCGTTTGGTTTGTGTCGTTCAAGCGAAACTAACTTGTTTTCAACTA
CTATCGCTCGGATTGGACACCTTCAGCACGGAGTCTAAGGGAAGCGAAGG
AGAGAAGCGTTCGACGTGAAAGGTCAGAGTAATGGACCAGGGCAACTGCG
GAGCCGACGCCCCGACATGTTGTCCCACTCGTCGCCGAGGACTGCATCCG
TTGGGGTTCCGCATCTCGGTGTGTGGACTCGTTATGTTTTCAGTGCTGTG
CACATGTGTGTGTTTTCGTCTGTGCGCTTACAGCAGCTGCAGTGTTGTGT
GCATGTGGTTAATCGGCCGTGGGCACGCACGCGGACCGGGAGGAACGGCG
GATGGGGCGCGGCGGGTAGATTTGTTCCACAACGGGAGAAACATGTAGCT
TGCCTTTCGGACGTGTGTGAAATACAATCGTTTTCCGCGAGCGGTGGAGG
GCCGGTAGGAGCGGGGAGAAATCCGGTTCGTAGGGTTGGGATTGTGTGAC
GGTGGGGCTAAGCGGTGTGCAAAGAGGGGCGGGAATTGGCGTCCGGCCAG
GTAGATACTGGTGGCCACGCTACTGCTAGCGGCAAAATGAGTTTTGTGTC
CTGGCTGTGGAGCTGCTGCTGTGGCGGAATGGATCTTGGGTAGAAATTCA
TTTCCTCTCTTTTTTTCTCTTGGTATTAAGCGCCATCACGTGTGCGTCAG
ACGCAGCCAGAGGGTACTGTTACGTTTTATAAAATATATTTCGATGTTTT
TATTTTCACCACTCACGATTTGTGGTCTTTTTTGTTTTCGTTTCCGTTCC
ACCTTGTAGAAGTGTTATTGCTTGAGCTGTCTTCGGTACAACAAATTTAT
GCGCCGCTATTCGTGTCTGCACTACAACAAAGTGTTCTTCCTGTCCCTGT
GATATTTGCGTCTCCAGCTTGCCTCGTTGTCCTCTTTGATTCTGGTAATG
TGTTGCTTGCTGTTTTCTTTCAGACCGCTGTGCTCTTCAGCGGTGTATCT
CCACTGTGTGCGTTTGTTTGTTCTGTCACTTTGATGACTTTTCGTTGTAC
TTTGATTTTCTCCACACTCACCCCAGTCGTGGTTGGAGAATGAGGTGAGG
AGAGAACGATGCAGCAGTTGTGTCCGGCGTGCAGAGTAGAGTCGCGTGTT
TCGGATTTCGCCGGGGGTTGGTTGAGGATGTGGTGATTTCGAGTCGCGCC
TCCATCGCATCCATTCGTAAATACGTCAGGCGCATGCATAGGGCGAGCGT
GGTCGTTGACATGGTATCGCATGCATCTAGCGCGGAAACGATGCTTGAAA
GGGGTTGCCCAGAGAAAGAAGATTTTTCGACCCTGGTCGTATCAGCAGAC
GTTTGTCGCTCGCTGCCCTTGTGTTGTGCCTGTGGGCAGCCGTCTCTTTG
TCTCTCGTGTCTCGGTCTCAGTGTGGATGGCAGGGGGTTGGAGGGGAAGG
AAGGTGTAGGCCGTGGGTAGTAGTGTATTTTTCTCGTGTCTTTCGCTAGT
ATCCGGTTGTACGCGGTATGAGCTTTGCCGCAACTAACTCTTAGAATAGG
CTGGGATTGGCTGTGATAAATGAAACATTAAACGAATTAACAGGTTTTGA
ACCTTATTGCTACACTCTCTTCTGAGGAACACAAATAAACACAAGTTGGC
ATTGGATCTGCCTTTTGTGCTTTATTTCACCTTAATACGCTGAATCAAGA
CGGAT
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:937652..942056+

>mRNA_P-fluviatile_contig11.1062.1 ID=mRNA_P-fluviatile_contig11.1062.1|Name=mRNA_P-fluviatile_contig11.1062.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1458bp|location=Sequence derived from alignment at P-fluviatile_contig11:937652..942056+ (Porterinema fluviatile SAG_2381)
ATGCCGAGCCCTGAGGGTTCCCCGCTTGAGTGGTTTGCTAGACTCCCCAT
TTTCAGCTGGATGCAAGGACAAGCACGCCCACAAGGACAGGCAAAGCGCG
CTGCTTGTGGTCCTCCCAGCGAGGAAGTTGACATGAAAACAACCCAACAA
ACAGCGACGCGACAGCAGCAGCGCCGCCTCGCGAAGGCGCCCCCGAAGCT
CTGCACACGAGAGGAGAGCCCCATCCCCCCGACCGCGCCCGTCAGCACGT
GCGATTCTTCAGCGGTAGGCGCGTCCTGGTCAGAACAGGCGGTGGTGGGC
AGCAGCGATTCGGCGGCAGCGGAAGCGGGAGATATGATGGCTTTCCATCG
ATTAAGCAGCGGCGGAGGCAGCAACGGCAGCGGGGGCTGCGGGCAGCAGC
AGCTCACGCTCACGTTGGATGCCGCACCTGTCGATTCCGCCCCCTCCGCG
CTCCCGGTGGACATTCCTTGGAGGCTTGTCGACCCAGATTCCGCGACGAC
GCCAATGCAGGAGATGCCGAGCCCTGAGGGTTCCCCGCTTGAGTGGTTTG
CTAGACTCCCCATTTTCAGCTGGATGCAAGGACAAGCACGCCCACAAGGA
CAGGCAAAGCGCGCTGCTTGTGGTCCTCCCAGCGAGGAAGTTGACATGAA
AACAACCCAACAAACAGCGACGCGACAGCAGCAGCGCCGCCTCGCGAAGG
CGCCCCCGAAGCTCTGCACACGAGAGGAGAGCCCCATCCCCCCGACCGCG
CCCGTCAGCACGTGCGATTCTTCAGCGGTAGGCGCGTCCTGGTCAGAACA
GGCGGTGGTGGGCAGCAGCGATTCGGCGGCAGCGGAAGCGGGAGATATGA
TGGCTTTCCATCGATTAAGCAGCGGCGGAGGCAGCAACGGCAGCGGGGGC
TGCGGGCAGCAGCAGCTCACGCTCACGTTGGATGCCGCACCTGTCGATTC
CGCCCCCTCCGCGCTCCCGGTGGACATTCCTTGGAGGCTTGTCGACCCAG
ATTCCGCGACGACGCCAATGCAGGAGGCGCTTTCCCACTCCTTGGCGCAA
ATGGAGTTGCGAATGTCTGGCCGGACGTCCGGTAGGCACTCCACCAGGAC
CTCCCACGCTAGCAGCAACACCTCCACTCCCCACCACCATCGCCGCACAC
AATCATCCCTGCCGGCGAGCGGTTGGGCCGGGGCGGCCGACGGTGGCAGC
GGCAGCGGCGGAAGCGAAGCTCCCTCGTCGTTTTCAAGCTAAGCGCTTTC
CCACTCCTTGGCGCAAATGGAGTTGCGAATGTCTGGCCGGACGTCCGGTA
GGCACTCCACCAGGACCTCCCACGCTAGCAGCAACACCTCCACTCCCCAC
CACCATCGCCGCACACAATCATCCCTGCCGGCGAGCGGTTGGGCCGGGGC
GGCCGACGGTGGCAGCGGCAGCGGCGGAAGCGAAGCTCCCTCGTCGTTTT
CAAGCTAA
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