mRNA_P-fluviatile_contig11.1033.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1033.1
Unique NamemRNA_P-fluviatile_contig11.1033.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:591729..592259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size531
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1033.1prot_P-fluviatile_contig11.1033.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 591898..592230 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815428.37276-UTR-P-fluviatile_contig11:591728..5918971622815428.37276-UTR-P-fluviatile_contig11:591728..591897Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 591729..591897 +
1693561814.3087256-UTR-P-fluviatile_contig11:591728..5918971693561814.3087256-UTR-P-fluviatile_contig11:591728..591897Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 591729..591897 +
1622815428.3943381-UTR-P-fluviatile_contig11:592230..5922591622815428.3943381-UTR-P-fluviatile_contig11:592230..592259Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 592231..592259 +
1693561814.3234997-UTR-P-fluviatile_contig11:592230..5922591693561814.3234997-UTR-P-fluviatile_contig11:592230..592259Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 592231..592259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815428.3844604-CDS-P-fluviatile_contig11:591897..5922301622815428.3844604-CDS-P-fluviatile_contig11:591897..592230Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 591898..592230 +
1693561814.3161004-CDS-P-fluviatile_contig11:591897..5922301693561814.3161004-CDS-P-fluviatile_contig11:591897..592230Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 591898..592230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1033.1

>prot_P-fluviatile_contig11.1033.1 ID=prot_P-fluviatile_contig11.1033.1|Name=mRNA_P-fluviatile_contig11.1033.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=111bp
MAAAEVLYRAGDAGGGIASIDPSEVSWAMNVVEGMIMEDCGWAEGSLVMD
RFRDPLAEQERVHDFCEEYVPEPLVYDPVTLKLEPEDAPATAFVSLELST
LSPTRKKPDK*
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mRNA from alignment at P-fluviatile_contig11:591729..592259+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1033.1 ID=mRNA_P-fluviatile_contig11.1033.1|Name=mRNA_P-fluviatile_contig11.1033.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=531bp|location=Sequence derived from alignment at P-fluviatile_contig11:591729..592259+ (Porterinema fluviatile SAG_2381)
CGGACATACCTGTGCCCCCGCCAGGTGTAGCTCGGCGGATCGACAATCCC
GGCAACAGCTAGTCGTTCGGGGACGTTGTCAGCAGTCCCCGTCTCCGCGT
CAATCCGAAGCGGATGAAGCCGAAGGGGCTAACGCCACGCAGGTCGGGAA
CGCGCGCTGTGATGAAGTGATGGCAGCGGCGGAAGTCTTGTACCGCGCAG
GAGACGCGGGCGGAGGTATCGCTTCAATCGACCCGTCGGAGGTGTCTTGG
GCGATGAACGTTGTGGAGGGCATGATTATGGAGGATTGCGGATGGGCAGA
GGGCTCGCTGGTGATGGATCGCTTTCGCGACCCCCTGGCGGAACAGGAGC
GAGTGCACGACTTCTGCGAAGAGTACGTGCCGGAGCCGTTGGTCTACGAC
CCGGTGACGCTGAAGCTGGAGCCGGAGGACGCGCCTGCTACAGCCTTCGT
GTCCCTCGAGCTAAGTACCCTGTCTCCCACACGGAAGAAACCGGATAAGT
AGAGCCGGTCCCTCTTTCGGAGTCGCAAGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:591729..592259+

>mRNA_P-fluviatile_contig11.1033.1 ID=mRNA_P-fluviatile_contig11.1033.1|Name=mRNA_P-fluviatile_contig11.1033.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=666bp|location=Sequence derived from alignment at P-fluviatile_contig11:591729..592259+ (Porterinema fluviatile SAG_2381)
ATGGCAGCGGCGGAAGTCTTGTACCGCGCAGGAGACGCGGGCGGAGGTAT
CGCTTCAATCGACCCGTCGGAGGTGTCTTGGGCGATGAACGTTGTGGAGG
GCATGATTATGGAGGATTGCGGATGGGCAGAGGGCTCGCTGGTGATGGAT
CGCTTTCGCGACCCCCTGGCGGAACAGGAGCGAGTGCACGACTTCTGCGA
AGAGTACGTGCCGGAGCCGTTGGTCTACGACCCGGTGACGCTGAAGCTGG
AGCCGGAGGACGCGCCTGCTACAGCCTTCGTGTCCCTCGAGCTAAGTACC
CTGTCTCCCACACGGAAGAAACCGGATAAGTAGATGGCAGCGGCGGAAGT
CTTGTACCGCGCAGGAGACGCGGGCGGAGGTATCGCTTCAATCGACCCGT
CGGAGGTGTCTTGGGCGATGAACGTTGTGGAGGGCATGATTATGGAGGAT
TGCGGATGGGCAGAGGGCTCGCTGGTGATGGATCGCTTTCGCGACCCCCT
GGCGGAACAGGAGCGAGTGCACGACTTCTGCGAAGAGTACGTGCCGGAGC
CGTTGGTCTACGACCCGGTGACGCTGAAGCTGGAGCCGGAGGACGCGCCT
GCTACAGCCTTCGTGTCCCTCGAGCTAAGTACCCTGTCTCCCACACGGAA
GAAACCGGATAAGTAG
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