mRNA_P-fluviatile_contig11.1013.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1013.1
Unique NamemRNA_P-fluviatile_contig11.1013.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.1013.1 vs. uniprot
Match: D8LLH2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLH2_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 5.610e-20
Identity = 56/66 (84.85%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 LDRARSYKALYAAAHHEHKGMKASLAASTQICMSQQKLIQMLQQTSSAPPGHALDPEELLAGPSAG 198
            LDRARSYKALYAAAHHEH+GMKASLAASTQICM QQKLIQMLQQ SSAPP  ALDPE+ LAG   G
Sbjct:   70 LDRARSYKALYAAAHHEHQGMKASLAASTQICMGQQKLIQMLQQASSAPP-PALDPEDFLAGVGVG 134
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BLAST of mRNA_P-fluviatile_contig11.1013.1 vs. uniprot
Match: A0A6H5JQY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY6_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 8.580e-11
Identity = 58/116 (50.00%), Postives = 67/116 (57.76%), Query Frame = 1 
Query:  838 AAAHVSARQAIAMRAAASVTREAAILEGIAAAGLPRGGEA-------------AGVGRVGGRGVGEERRRGGVAGHLRGRSSLLDDDLISHSSLRREYDDTFLNQPLRGEYRRGEQ 1146
            AAAHVSA+QA A+R    V RE A+ EG+AAA                        G+ G  G          AG + GRS+ LDDDLISHSSLRREYDD +LNQPLRGE+RRGEQ
Sbjct:  264 AAAHVSAKQASALR----VARETAMREGMAAAXXXXXXXXXXXXXXXXXXXXXVAXGKSGAAG----------AGSVDGRSNPLDDDLISHSSLRREYDDIYLNQPLRGEHRRGEQ 365
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLH2_ECTSI5.610e-2084.85Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQY6_9PHAE8.580e-1150.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:397473..400787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_004600.1
Exons4
Model size1624
Cds size1623
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1013.1prot_P-fluviatile_contig11.1013.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 397473..400787 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815424.9435902-CDS-P-fluviatile_contig11:397472..3975911622815424.9435902-CDS-P-fluviatile_contig11:397472..397591Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 397473..397591 -
1693561808.00982-CDS-P-fluviatile_contig11:397472..3975911693561808.00982-CDS-P-fluviatile_contig11:397472..397591Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 397473..397591 -
1622815424.9556093-CDS-P-fluviatile_contig11:398466..3985941622815424.9556093-CDS-P-fluviatile_contig11:398466..398594Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 398467..398594 -
1693561808.0198913-CDS-P-fluviatile_contig11:398466..3985941693561808.0198913-CDS-P-fluviatile_contig11:398466..398594Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 398467..398594 -
1622815424.9650223-CDS-P-fluviatile_contig11:399117..4004451622815424.9650223-CDS-P-fluviatile_contig11:399117..400445Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 399118..400445 -
1693561808.208247-CDS-P-fluviatile_contig11:399117..4004451693561808.208247-CDS-P-fluviatile_contig11:399117..400445Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 399118..400445 -
1622815424.9779484-CDS-P-fluviatile_contig11:400739..4007871622815424.9779484-CDS-P-fluviatile_contig11:400739..400787Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 400740..400787 -
1693561808.2221253-CDS-P-fluviatile_contig11:400739..4007871693561808.2221253-CDS-P-fluviatile_contig11:400739..400787Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 400740..400787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1013.1

>prot_P-fluviatile_contig11.1013.1 ID=prot_P-fluviatile_contig11.1013.1|Name=mRNA_P-fluviatile_contig11.1013.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=541bp
LDRARSYKALYAAAHHEHKGMKASLAASTQICMSQQKLIQMLQQTSSAPP
GHALDPEELLAGPSAGGRGGVMPPTPPSPIPLRGRGAGGRAGGTGGRDGI
DDDEEEDVQEDVTEEKGGEQVEDTAAAAIALAQTSGSRHRRGLSRGRGDG
GVGGGGEASGRDLERDRGEQGRVEGEYSSQSGVRVSRRMSRQDGGGGSEG
GGMRRSDRGGVDGLESGGGNSTAAAATAASAAAAAAAAALYQPYARSTTL
FPDPHQEQQHLHHKHSELTSSVEKTAANAAAAHVSARQAIAMRAAASVTR
EAAILEGIAAAGLPRGGEAAGVGRVGGRGVGEERRRGGVAGHLRGRSSLL
DDDLISHSSLRREYDDTFLNQPLRGEYRRGEQHQHQQQQEWAYGSGSGEA
GASEGSGVAAAGLAAAAAVGAGVGAGADANKEGRRGGHGGGSADLGADAD
MLTGMARARNTRAHLCERGKTKSGSQSSVSTVASATKSTKSGRKGNVERG
AAHDGSKRRARGTSPRPTAPRQATVSQRPSSGKPAAPAGGS
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mRNA from alignment at P-fluviatile_contig11:397473..400787-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1013.1 ID=mRNA_P-fluviatile_contig11.1013.1|Name=mRNA_P-fluviatile_contig11.1013.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3315bp|location=Sequence derived from alignment at P-fluviatile_contig11:397473..400787- (Porterinema fluviatile SAG_2381)
CTGGACCGGGCGCGGTCTTACAAGGCCTTGTACGCCGCTGCCCACCATGT
ACGCGGAGAAAAGAAAATGCTTGCGCGCAGGGGGGGGGGATACGGTCATT
TCTGCTGGGCACACGAAAAGCCTATTTGTTTCTTTTTTCATTCGGTTGAT
GTTTGTGGGGTCATCTTATCGCCCGCCCGTCCATCCCGCCCTCCCTCCCT
CCCTCCCTCCCTCCCTGTCGGTCCCTCTCTCGTCCTCCCTCTCTGTCTCT
GTCTCGCAATCTATCTCCGTCTTGCCCCCCTTTCTCCCCCCTTCTCTCTC
AATTATGCCCCCCACCCCTTCTCACGCTCTCTCAACCCGCAGGAGCACAA
GGGCATGAAGGCCTCCCTTGCGGCCTCGACCCAGATCTGCATGAGCCAGC
AGAAGCTCATCCAGATGCTGCAGCAGACCTCCTCGGCGCCCCCAGGCCAC
GCCCTCGACCCCGAGGAGCTCCTCGCTGGCCCGAGCGCGGGCGGCAGGGG
CGGTGTCATGCCCCCGACGCCGCCGTCCCCTATCCCGTTGAGGGGACGAG
GAGCAGGGGGGCGGGCAGGGGGCACCGGCGGCCGCGATGGCATCGACGAC
GATGAGGAGGAGGACGTCCAGGAGGACGTGACGGAGGAGAAGGGGGGGGA
ACAGGTGGAGGATACAGCGGCGGCGGCAATTGCTCTTGCGCAAACCAGCG
GCAGTCGGCACCGGCGCGGGTTGTCCCGGGGAAGGGGAGATGGTGGGGTC
GGCGGCGGCGGCGAAGCCTCCGGACGAGATCTTGAGCGCGATCGAGGCGA
GCAGGGTCGGGTCGAGGGGGAGTACTCCTCGCAGTCTGGCGTAAGGGTTA
GCAGACGGATGAGCCGTCAAGATGGCGGGGGTGGCAGCGAGGGCGGTGGT
ATGAGAAGGTCAGATCGGGGAGGCGTCGACGGTTTAGAGAGCGGCGGCGG
CAACAGCACGGCGGCTGCGGCAACAGCTGCTTCGGCGGCGGCGGCCGCGG
CAGCCGCGGCCCTTTATCAGCCTTATGCGAGGTCGACAACCTTGTTCCCG
GACCCGCATCAGGAGCAACAACATTTACATCACAAACATTCGGAGTTGAC
GAGTTCGGTGGAGAAGACAGCAGCGAACGCGGCGGCGGCCCACGTGAGCG
CGAGGCAAGCGATCGCGATGCGCGCTGCGGCCTCCGTGACTCGCGAAGCG
GCCATCCTTGAAGGCATAGCCGCTGCAGGTCTGCCCCGAGGAGGAGAGGC
CGCCGGAGTCGGCCGAGTCGGCGGTAGGGGCGTGGGCGAGGAGAGAAGGA
GAGGCGGGGTCGCGGGACATCTCCGCGGAAGGTCGAGCCTGCTCGACGAT
GACCTCATCAGCCACAGCAGCCTGCGACGAGAGTACGACGACACTTTCCT
CAACCAGCCGTTGAGAGGCGAGTATCGCAGGGGAGAACAGCATCAGCACC
AGCAGCAACAGGAGTGGGCGTACGGCAGCGGAAGCGGGGAAGCCGGAGCG
AGTGAGGGAAGCGGGGTCGCGGCAGCGGGACTGGCGGCGGCGGCGGCGGT
AGGAGCTGGAGTGGGGGCTGGGGCGGATGCGAATAAGGAGGGAAGAAGAG
GTGGCCACGGTGGCGGGAGCGCGGACTTGGGTGCAGACGCGGATATGCTT
ACCGGCATGGCTCGAGCGAGGTAAGGGGATGATCGGCGGTGGTGGCGGGG
GGTCCAGGGTAGCACGATGCACGGTGAATTTTTGTTGGGGCCGCAGCAGG
TTTCTCCGGGGCTTGCGCCTGCTTCCATTTCTTCGAAAGCATGGAGGTGA
TTGTTCTGTTATTGCGACTGCTGCTGCTGCTGCTTTTTTGCGGGTGGCTC
GTCCTTGGCTCCTGTATTTCGCATTCCCTCGGTTCCTCTCGACATACCAG
CTCAAAATTTGCGCCGTGCCGTCTGTGCTGTCTCATGCTTTCCCAAGGCG
CCAGCCCTTTCCCTGGCAATCCTTTTTAGGCAAACGTTGAGTGGCGCACC
AACAACACAGCACTGCTCCCAAGGCTTGCATGTATTCCGCTGGAATTTCA
CCGCTGCGATTGTGAAGCAACCGCTTGATGTTCGTCGCTGCTTTCGTCGT
CGTCGTCGCTGTTGCCGTCGTTGGTTTTCTGGCTGTCTCTGACGCTGCGG
TTCCTTTTCTCACGTTGCCGCTGCCTCGTCATGCTTTGCGTAGGAACACG
AGGGCCCATCTATGCGAGAGGGGAAAGACCAAGTCCGGCTCGCAATCATC
GGTGTCCACCGTCGCGTCTGCGACCAAGAGCACCAAGAGCGGGAGAAAAG
GAAACGTAGAGCGAGGTGCAGGTGCGCATGAGCAAAGGGAAGAAGGGGGA
AAGGGGGTGGCACGAAGGGTAGGTCGAACCGGTTTCTTGCTTGCTAAAGC
CACTCGGCCATAGCCCGTGTGGCCGTCGTCGAGACGGAGCACTGCCCTGC
TGTCGCACTCGTCGGAGGGTGTCGCGCAGACTGCTTTATTTGGGCACTGT
CTTTGCGCATGCACGTAAGGAGGGAACGCCCGGCTGAGATAGAGCCGCGT
GAGGTCATGGTATTTGTTGATATTCGCCGCCGTCGTCACTCAGGCACACC
AATAGTCTCTCGCGTTCCCTGCTATCCCGATATCGCTGGCGCGGAGCACG
CGCACGTAAATCTGTATCGGGCTTCTCGCCGGCTGCAGATCGGGAAGGCC
GGACCTGCTCCAGTCGTGAAATCTCCTTGATTGCATTCCGCGCGCCGTGA
CGATAATTAGGCACGTTCTCAGCACCGATTGCAAGACGCCGACTTTTGAG
GGTCGTGCCCTCTCTGATAAAGGAACCCTGGTTCAGTGCCGGTGTGTCTT
TTGAGGAGCAACTCTCGATAGACACCCGAACAACACATTGTAATTTCCGG
CAACTGGCCGCTGCCCCGTGGGCGAGCCCTCACCACAATATCTCACCACA
GAGTGCTACACCGTGCAGATGCACAGCAGTCCTGAGCACCTGAATTTCAA
GGTCGCTCATCGGCTGGCTTGACTCCCCCTGCCCCCCCTCGCGCCCCATA
ATTCGAGCCCCCCCCCCTCCCCCTTCGGGCGCTGTCCCCCCGCGGCGATA
CAATTTCCTGCTCCGCGTGGTCCTCCTGAAAATCCCGCTCTTCCACATGT
CGTGTGATCATATTCGTCGTGATCGCCATAACTATCACACAACCAGCACA
CGACGGCAGCAAGAGACGAGCCAGAGGAACCTCCCCGCGCCCCACGGCGC
CGCGCCAAGCGACGGTTTCGCAGCGGCCCTCGAGCGGGAAACCGGCTGCA
CCCGCGGGAGGGAGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:397473..400787-

>mRNA_P-fluviatile_contig11.1013.1 ID=mRNA_P-fluviatile_contig11.1013.1|Name=mRNA_P-fluviatile_contig11.1013.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3246bp|location=Sequence derived from alignment at P-fluviatile_contig11:397473..400787- (Porterinema fluviatile SAG_2381)
CTGGACCGGGCGCGGTCTTACAAGGCCTTGTACGCCGCTGCCCACCATCT
GGACCGGGCGCGGTCTTACAAGGCCTTGTACGCCGCTGCCCACCATGAGC
ACAAGGGCATGAAGGCCTCCCTTGCGGCCTCGACCCAGATCTGCATGAGC
CAGCAGAAGCTCATCCAGATGCTGCAGCAGACCTCCTCGGCGCCCCCAGG
CCACGCCCTCGACCCCGAGGAGCTCCTCGCTGGCCCGAGCGCGGGCGGCA
GGGGCGGTGTCATGCCCCCGACGCCGCCGTCCCCTATCCCGTTGAGGGGA
CGAGGAGCAGGGGGGCGGGCAGGGGGCACCGGCGGCCGCGATGGCATCGA
CGACGATGAGGAGGAGGACGTCCAGGAGGACGTGACGGAGGAGAAGGGGG
GGGAACAGGTGGAGGATACAGCGGCGGCGGCAATTGCTCTTGCGCAAACC
AGCGGCAGTCGGCACCGGCGCGGGTTGTCCCGGGGAAGGGGAGATGGTGG
GGTCGGCGGCGGCGGCGAAGCCTCCGGACGAGATCTTGAGCGCGATCGAG
GCGAGCAGGGTCGGGTCGAGGGGGAGTACTCCTCGCAGTCTGGCGTAAGG
GTTAGCAGACGGATGAGCCGTCAAGATGGCGGGGGTGGCAGCGAGGGCGG
TGGTATGAGAAGGTCAGATCGGGGAGGCGTCGACGGTTTAGAGAGCGGCG
GCGGCAACAGCACGGCGGCTGCGGCAACAGCTGCTTCGGCGGCGGCGGCC
GCGGCAGCCGCGGCCCTTTATCAGCCTTATGCGAGGTCGACAACCTTGTT
CCCGGACCCGCATCAGGAGCAACAACATTTACATCACAAACATTCGGAGT
TGACGAGTTCGGTGGAGAAGACAGCAGCGAACGCGGCGGCGGCCCACGTG
AGCGCGAGGCAAGCGATCGCGATGCGCGCTGCGGCCTCCGTGACTCGCGA
AGCGGCCATCCTTGAAGGCATAGCCGCTGCAGGTCTGCCCCGAGGAGGAG
AGGCCGCCGGAGTCGGCCGAGTCGGCGGTAGGGGCGTGGGCGAGGAGAGA
AGGAGAGGCGGGGTCGCGGGACATCTCCGCGGAAGGTCGAGCCTGCTCGA
CGATGACCTCATCAGCCACAGCAGCCTGCGACGAGAGTACGACGACACTT
TCCTCAACCAGCCGTTGAGAGGCGAGTATCGCAGGGGAGAACAGCATCAG
CACCAGCAGCAACAGGAGTGGGCGTACGGCAGCGGAAGCGGGGAAGCCGG
AGCGAGTGAGGGAAGCGGGGTCGCGGCAGCGGGACTGGCGGCGGCGGCGG
CGGTAGGAGCTGGAGTGGGGGCTGGGGCGGATGCGAATAAGGAGGGAAGA
AGAGGTGGCCACGGTGGCGGGAGCGCGGACTTGGGTGCAGACGCGGATAT
GCTTACCGGCATGGCTCGAGCGAGGAGCACAAGGGCATGAAGGCCTCCCT
TGCGGCCTCGACCCAGATCTGCATGAGCCAGCAGAAGCTCATCCAGATGC
TGCAGCAGACCTCCTCGGCGCCCCCAGGCCACGCCCTCGACCCCGAGGAG
CTCCTCGCTGGCCCGAGCGCGGGCGGCAGGGGCGGTGTCATGCCCCCGAC
GCCGCCGTCCCCTATCCCGTTGAGGGGACGAGGAGCAGGGGGGCGGGCAG
GGGGCACCGGCGGCCGCGATGGCATCGACGACGATGAGGAGGAGGACGTC
CAGGAGGACGTGACGGAGGAGAAGGGGGGGGAACAGGTGGAGGATACAGC
GGCGGCGGCAATTGCTCTTGCGCAAACCAGCGGCAGTCGGCACCGGCGCG
GGTTGTCCCGGGGAAGGGGAGATGGTGGGGTCGGCGGCGGCGGCGAAGCC
TCCGGACGAGATCTTGAGCGCGATCGAGGCGAGCAGGGTCGGGTCGAGGG
GGAGTACTCCTCGCAGTCTGGCGTAAGGGTTAGCAGACGGATGAGCCGTC
AAGATGGCGGGGGTGGCAGCGAGGGCGGTGGTATGAGAAGGTCAGATCGG
GGAGGCGTCGACGGTTTAGAGAGCGGCGGCGGCAACAGCACGGCGGCTGC
GGCAACAGCTGCTTCGGCGGCGGCGGCCGCGGCAGCCGCGGCCCTTTATC
AGCCTTATGCGAGGTCGACAACCTTGTTCCCGGACCCGCATCAGGAGCAA
CAACATTTACATCACAAACATTCGGAGTTGACGAGTTCGGTGGAGAAGAC
AGCAGCGAACGCGGCGGCGGCCCACGTGAGCGCGAGGCAAGCGATCGCGA
TGCGCGCTGCGGCCTCCGTGACTCGCGAAGCGGCCATCCTTGAAGGCATA
GCCGCTGCAGGTCTGCCCCGAGGAGGAGAGGCCGCCGGAGTCGGCCGAGT
CGGCGGTAGGGGCGTGGGCGAGGAGAGAAGGAGAGGCGGGGTCGCGGGAC
ATCTCCGCGGAAGGTCGAGCCTGCTCGACGATGACCTCATCAGCCACAGC
AGCCTGCGACGAGAGTACGACGACACTTTCCTCAACCAGCCGTTGAGAGG
CGAGTATCGCAGGGGAGAACAGCATCAGCACCAGCAGCAACAGGAGTGGG
CGTACGGCAGCGGAAGCGGGGAAGCCGGAGCGAGTGAGGGAAGCGGGGTC
GCGGCAGCGGGACTGGCGGCGGCGGCGGCGGTAGGAGCTGGAGTGGGGGC
TGGGGCGGATGCGAATAAGGAGGGAAGAAGAGGTGGCCACGGTGGCGGGA
GCGCGGACTTGGGTGCAGACGCGGATATGCTTACCGGCATGGCTCGAGCG
AGGAACACGAGGGCCCATCTATGCGAGAGGGGAAAGACCAAGTCCGGCTC
GCAATCATCGGTGTCCACCGTCGCGTCTGCGACCAAGAGCACCAAGAGCG
GGAGAAAAGGAAACGTAGAGCGAGGTGCAGGAACACGAGGGCCCATCTAT
GCGAGAGGGGAAAGACCAAGTCCGGCTCGCAATCATCGGTGTCCACCGTC
GCGTCTGCGACCAAGAGCACCAAGAGCGGGAGAAAAGGAAACGTAGAGCG
AGGTGCAGCACACGACGGCAGCAAGAGACGAGCCAGAGGAACCTCCCCGC
GCCCCACGGCGCCGCGCCAAGCGACGGTTTCGCAGCGGCCCTCGAGCGGG
AAACCGGCTGCACCCGCGGGAGGGAGCCACACGACGGCAGCAAGAGACGA
GCCAGAGGAACCTCCCCGCGCCCCACGGCGCCGCGCCAAGCGACGGTTTC
GCAGCGGCCCTCGAGCGGGAAACCGGCTGCACCCGCGGGAGGGAGC
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