mRNA_P-fluviatile_contig11.1007.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1007.1
Unique NamemRNA_P-fluviatile_contig11.1007.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig11.1007.1 vs. uniprot
Match: A0A6H5JW43_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW43_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 9.980e-85
Identity = 142/166 (85.54%), Postives = 149/166 (89.76%), Query Frame = 1
Query:   34 AVPVSEASNGNLERLPRFVDVGYIKESSHKDSIKKHVMANKPIDDKFWSHVERMANLLSSGMFTAEDHRELLDAKVADLLRDGAPRSAAAGGAAGVGGSQMMETPRPAQKKGKRPAKEASAAANTMHGNIVNCWAAATTKPIKRTRNGIVEEVTRVHYPIALPPPK 531
            A+P+S+AS GNLERL +FVD GYIKESSHKDSIKKHVMANK IDDKFWSHVER ANLLSSGM TAED+RE LDAK ADLLRDGAPRSAAA G A VGGSQ++ETPRPAQKKG R AKEA AAANTMH NIVNCWAAAT KPIKRTRNGIVEEVTRVHYPIA PPPK
Sbjct:   44 AMPLSDASIGNLERLSKFVDAGYIKESSHKDSIKKHVMANKLIDDKFWSHVERTANLLSSGMCTAEDYREQLDAKGADLLRDGAPRSAAASGEAAVGGSQVVETPRPAQKKGNRTAKEAGAAANTMHENIVNCWAAATNKPIKRTRNGIVEEVTRVHYPIAPPPPK 209          
BLAST of mRNA_P-fluviatile_contig11.1007.1 vs. uniprot
Match: A0A6H5KMG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG4_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 2.320e-77
Identity = 119/142 (83.80%), Postives = 127/142 (89.44%), Query Frame = 1
Query:   31 KAVPVSEASNGNLERLPRFVDVGYIKESSHKDSIKKHVMANKPIDDKFWSHVERMANLLSSGMFTAEDHRELLDAKVADLLRDGAPRSAAAGGAAGVGGSQMMETPRPAQKKGKRPAKEASAAANTMHGNIVNCWAAATTKP 456
            KA+P+S+AS GNLERL +F D  YIKES HKDSIKKHVMANKPIDDKFWSHVERMANLLSSGMFTA D+R+ LD KVADLLRDGAPRSAAAGG  GVGGSQ++ETPRPAQKKGKR AKEA AA NTMHGNIVNCWAAAT KP
Sbjct:   17 KAMPLSDASIGNLERLSKFADASYIKESGHKDSIKKHVMANKPIDDKFWSHVERMANLLSSGMFTAGDYRKQLDVKVADLLRDGAPRSAAAGGEVGVGGSQVVETPRPAQKKGKRTAKEARAATNTMHGNIVNCWAAATNKP 158          
BLAST of mRNA_P-fluviatile_contig11.1007.1 vs. uniprot
Match: A0A6H5JW86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW86_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 1.050e-76
Identity = 120/142 (84.51%), Postives = 131/142 (92.25%), Query Frame = 1
Query:   34 AVPVSEASNGNLERLPRFVDVGYIKESSHKDSIKKHVMANKPIDDKFWSHVERMANLLSSGMFTAEDHRELLDAKVADLLRDGAPRSAAAGGAAGVGGSQMMETPRPAQKKGKRPAKEASAAANTMHGNIVNCWAAATTKPI 459
            A+P+S+AS GNLE+L +FVD GYIKESSHKDS KKHVMANKPIDDKFWSHVERMA+LLSSGMF AED+RE LDAKVA+LLRDGAP SAAAGG AGVGGSQ++ETPRPAQKKGKR AKEA AAANTMHGNIVNCWAAAT KP+
Sbjct:   90 AMPLSDASIGNLEKLSKFVDAGYIKESSHKDSTKKHVMANKPIDDKFWSHVERMASLLSSGMFPAEDYREQLDAKVANLLRDGAPLSAAAGGEAGVGGSQVVETPRPAQKKGKRTAKEARAAANTMHGNIVNCWAAATNKPV 231          
BLAST of mRNA_P-fluviatile_contig11.1007.1 vs. uniprot
Match: A0A6H5KB06_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB06_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 2.800e-71
Identity = 127/178 (71.35%), Postives = 136/178 (76.40%), Query Frame = 1
Query:   37 VPVSEASNGNLERLPRFVDVGYIKESSHKDSIKKHVMANKPIDDKFWSHVERMANLLSSGMFTAEDHRELLDAKVADLLRDGAPRSAAAGGAAGVGGSQMMETPRPAQKKGKRPAKEASAAANTMHGNIVNCWAAATTKP-------------IKRTRNGIVEEVTRVHYPIALPPPK 531
            +P+S+AS GNLERL +FVD GYIKESSHKD IKKHVMANKPIDD              +GM TAED+RE LDAKVADLLRDGAPRS AAGG AGVGGSQ++ETPR AQKKGKR AKEA AAAN MH NIVN WAAAT+KP             IKRTRNGIVEEVTRVHYPIA PPPK
Sbjct:    1 MPLSDASIGNLERLSKFVDAGYIKESSHKDFIKKHVMANKPIDD--------------NGMVTAEDYREQLDAKVADLLRDGAPRSGAAGGEAGVGGSQVVETPRTAQKKGKRTAKEARAAANRMHANIVNSWAAATSKPVGWMEIPFASFGHIKRTRNGIVEEVTRVHYPIAPPPPK 164          
BLAST of mRNA_P-fluviatile_contig11.1007.1 vs. uniprot
Match: A0A6H5JIN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN7_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 1.570e-70
Identity = 114/132 (86.36%), Postives = 121/132 (91.67%), Query Frame = 1
Query:   31 KAVPVSEASNGNLERLPRFVDVGYIKESSHKDSIKKHVMANKPIDDKFWSHVERMANLLSSGMFTAEDHRELLDAKVADLLRDGAPRSAAAGGAAGVGGSQMMETPRPAQKKGKRPAKEASAAANTMHGNIV 426
            KA+P+S+AS GNLERL +FVD GYIKESSHKDSIKKHVMANKPIDDKFWSHVERMANLLSSGMFTAED+RE LDAKVADLLRDGAPRSAAAGG A VGGSQ++ TPRPAQKKGKR A EA AAANTMH NIV
Sbjct:    5 KAMPLSDASIGNLERLSKFVDAGYIKESSHKDSIKKHVMANKPIDDKFWSHVERMANLLSSGMFTAEDYREQLDAKVADLLRDGAPRSAAAGGEAWVGGSQVVWTPRPAQKKGKRTANEARAAANTMHENIV 136          
BLAST of mRNA_P-fluviatile_contig11.1007.1 vs. uniprot
Match: A0A6H5KCL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCL0_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 1.510e-65
Identity = 112/143 (78.32%), Postives = 122/143 (85.31%), Query Frame = 1
Query:   31 KAVPVSEASNGNLERLPRFVDVGYIKESSHKDSIKKHVMANKPIDDKFWSHVERMANLLSSGMFTAEDHRELLDAKVADLLRDGAPRSAAAGGAAGVGGSQMMETPRPAQKKGKRPAKEASAAANTMHGNIVNCWAAATTKPI 459
            KA+P+S+AS GNLERL +FVD GYIKE         H+MANKPIDDKF SH+ERMANLLSSGMFTA+D+RE LDAKVADLLRDGAPRSAAA G AGVGGSQ+ ETPR AQKKGKR AKEA AAANTMHGNIVNCWAAAT KP+
Sbjct:  150 KAMPLSDASIGNLERLSKFVDAGYIKE---------HIMANKPIDDKFESHMERMANLLSSGMFTAKDYREQLDAKVADLLRDGAPRSAAADGEAGVGGSQVGETPRAAQKKGKRTAKEARAAANTMHGNIVNCWAAATNKPV 283          
BLAST of mRNA_P-fluviatile_contig11.1007.1 vs. uniprot
Match: D8LCR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR3_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 1.130e-61
Identity = 106/155 (68.39%), Postives = 118/155 (76.13%), Query Frame = 1
Query:   43 VSEASNGNLERLPRFVDVGYIKESSHKDSIKKHVMANKPIDDKFWSHVERMANLLSSGMFTAEDHRELLDAKVADLLRDGAPRSAAAGGAAGVGGSQMMETPRPAQKKGKRPAKEASAAANTMHGNIVNCWAAATTKPIKRTRNGIVEEVTRVHY 507
            +S+A  GNLERL  FVD GYIKES H DSIKKHV ANK IDD FWSHVERMANLLSSG FTA D+ E LDAKVA ++RDGAP+SAAA GA GVGG +M E  RPAQKK KR +KE  AAA T HGNIVNCWAA T  P K TR+   E ++ VH+
Sbjct:    3 LSDAFIGNLERLSSFVDAGYIKESRHDDSIKKHVTANKSIDDTFWSHVERMANLLSSGTFTATDNTEQLDAKVAHVVRDGAPQSAAARGATGVGGWKMKEARRPAQKKLKRTSKETKAAAKTKHGNIVNCWAAPTNNPEKATRHLCGEGLSLVHH 157          
BLAST of mRNA_P-fluviatile_contig11.1007.1 vs. uniprot
Match: A0A6H5JZQ9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ9_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 1.660e-49
Identity = 93/105 (88.57%), Postives = 97/105 (92.38%), Query Frame = 1
Query:  217 MFTAEDHRELLDAKVADLLRDGAPRSAAAGGAAGVGGSQMMETPRPAQKKGKRPAKEASAAANTMHGNIVNCWAAATTKPIKRTRNGIVEEVTRVHYPIALPPPK 531
            MFTAED RE LDAKVADLLRDGAPRSAAAGG AGVG SQ++ETPRPAQKKG R AKEASAAANTMHGNIVNCWAA+T +PIKRTRNGIVEEVTRVHYPIA PPPK
Sbjct:    1 MFTAEDFREQLDAKVADLLRDGAPRSAAAGGEAGVGRSQVVETPRPAQKKGMRTAKEASAAANTMHGNIVNCWAASTNEPIKRTRNGIVEEVTRVHYPIAPPPPK 105          
BLAST of mRNA_P-fluviatile_contig11.1007.1 vs. uniprot
Match: A0A6H5KER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KER2_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 5.640e-32
Identity = 65/78 (83.33%), Postives = 70/78 (89.74%), Query Frame = 1
Query:   37 VPVSEASNGNLERLPRFVDVGYIKESSHKDSIKKHVMANKPIDDKFWSHVERMANLLSSGMFTAEDHRELLDAKVADL 270
            +P+S+AS  NLERL +FVD GYIKESSHKDSIK HVMANKPIDDKF SHVERMANLLSSGMFT ED+RE LDAKVADL
Sbjct:    1 MPLSDASIDNLERLSKFVDAGYIKESSHKDSIKNHVMANKPIDDKFGSHVERMANLLSSGMFTTEDYREQLDAKVADL 78          
BLAST of mRNA_P-fluviatile_contig11.1007.1 vs. uniprot
Match: A0A6H5JU97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU97_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 8.980e-19
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1
Query:   37 VPVSEASNGNLERLPRFVDVGYIKESSHKDSIKKHVMANKPIDDKFWSHVERMAN 201
            +P+S+AS GNLERL  FVD GY KESSHKD IK+HV ANKPIDD FWSHVE  A+
Sbjct:    1 MPLSDASIGNLERLSSFVDAGYTKESSHKDFIKEHVRANKPIDDTFWSHVECKAS 55          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JW43_9PHAE9.980e-8585.54C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KMG4_9PHAE2.320e-7783.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW86_9PHAE1.050e-7684.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB06_9PHAE2.800e-7171.35C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JIN7_9PHAE1.570e-7086.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCL0_9PHAE1.510e-6578.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCR3_ECTSI1.130e-6168.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZQ9_9PHAE1.660e-4988.57DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KER2_9PHAE5.640e-3283.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU97_9PHAE8.980e-1972.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:349214..350290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog2880.D7G1D9
EggNOG OGs2DCSR@1,2S5KN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size533
Cds size531
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815436.4404614-CDS-P-fluviatile_contig11:349213..3496691622815436.4404614-CDS-P-fluviatile_contig11:349213..349669Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 349214..349669 +
1693561860.0480092-CDS-P-fluviatile_contig11:349213..3496691693561860.0480092-CDS-P-fluviatile_contig11:349213..349669Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 349214..349669 +
1622815436.4516847-CDS-P-fluviatile_contig11:350213..3502881622815436.4516847-CDS-P-fluviatile_contig11:350213..350288Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 350214..350288 +
1693561860.060051-CDS-P-fluviatile_contig11:350213..3502881693561860.060051-CDS-P-fluviatile_contig11:350213..350288Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 350214..350288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1007.1prot_P-fluviatile_contig11.1007.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 349214..350288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1007.1

>prot_P-fluviatile_contig11.1007.1 ID=prot_P-fluviatile_contig11.1007.1|Name=mRNA_P-fluviatile_contig11.1007.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=177bp
QKTRVLHAQGKAVPVSEASNGNLERLPRFVDVGYIKESSHKDSIKKHVMA
NKPIDDKFWSHVERMANLLSSGMFTAEDHRELLDAKVADLLRDGAPRSAA
AGGAAGVGGSQMMETPRPAQKKGKRPAKEASAAANTMHGNIVNCWAAATT
KPIKRTRNGIVEEVTRVHYPIALPPPK
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mRNA from alignment at P-fluviatile_contig11:349214..350290+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1007.1 ID=mRNA_P-fluviatile_contig11.1007.1|Name=mRNA_P-fluviatile_contig11.1007.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1077bp|location=Sequence derived from alignment at P-fluviatile_contig11:349214..350290+ (Porterinema fluviatile SAG_2381)
CAAAAAACTCGTGTTCTTCATGCACAAGGAAAGGCAGTGCCGGTTTCAGA AGCATCCAACGGCAACCTCGAGAGGTTGCCGAGGTTTGTTGATGTCGGCT ACATAAAGGAGAGCAGCCACAAAGATTCCATCAAGAAGCACGTGATGGCC AACAAGCCCATCGATGACAAGTTCTGGTCGCATGTGGAGCGCATGGCCAA CTTGCTGTCCAGCGGCATGTTTACGGCGGAAGACCACCGAGAGTTGCTAG ATGCAAAAGTTGCAGACCTTTTGCGAGACGGAGCACCACGGTCGGCAGCG GCGGGCGGAGCAGCAGGGGTTGGTGGGTCGCAGATGATGGAGACTCCTAG ACCCGCACAGAAAAAGGGCAAGCGCCCGGCCAAGGAAGCGAGTGCGGCGG CGAATACGATGCACGGGAACATCGTCAACTGCTGGGCCGCAGCAACAACC AAGCCGGTGAGTTGGTTGGAGATTTCGTTTGCATCCTTTGGCATGTTCGT AAATGACAACTGTTTGTCTGGTGCATCACCTGTTTCGTCTCCCTCGCCCG CACTGTTGACCGGCAGAGAAAATAAACAGCTGAAAATAAAGCACAAGAAT ATTCTGCGGAGGATTCTATTGGTTCACCATTTTCGAATCCTGGCAGTGCC CTTTTCTTGTACTCTCTTGTTTTTTTTCACCTTTCTTTTCACATTTGCTT GCAGCTGGTGTCGAAGTGTGCCAATCTGGCCGGCAGAGAAACTAAAACAC GAATGTTTTGCGGGGTATTCTTTTCGTTCACCATCGAGTTCGAGGACGCG GTTTTGAATCCTGGCACTGTCCGTGGTTTTGCCTTCGTGTTTTTTTCAAC GCTTTTTTTCTCCAACGCTTGCTGCTGTTGTCGAAGTGTGCCAATCACGT GCCGCTGCCGTTGAACATGGTAGGACAGTTGACAAACATTTTTTGCTGCA CACTAAGATCCCCGTACTCCGCGCCTCGCTTTGCTGCTATTTTCTCGCAG ATCAAGCGTACCCGCAATGGCATCGTGGAGGAAGTCACCCGCGTCCACTA TCCCATCGCACTACCTCCTCCCAAGTT
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:349214..350290+

>mRNA_P-fluviatile_contig11.1007.1 ID=mRNA_P-fluviatile_contig11.1007.1|Name=mRNA_P-fluviatile_contig11.1007.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1062bp|location=Sequence derived from alignment at P-fluviatile_contig11:349214..350290+ (Porterinema fluviatile SAG_2381)
CAAAAAACTCGTGTTCTTCATGCACAAGGAAAGGCAGTGCCGGTTTCAGA
AGCATCCAACGGCAACCTCGAGAGGTTGCCGAGGTTTGTTGATGTCGGCT
ACATAAAGGAGAGCAGCCACAAAGATTCCATCAAGAAGCACGTGATGGCC
AACAAGCCCATCGATGACAAGTTCTGGTCGCATGTGGAGCGCATGGCCAA
CTTGCTGTCCAGCGGCATGTTTACGGCGGAAGACCACCGAGAGTTGCTAG
ATGCAAAAGTTGCAGACCTTTTGCGAGACGGAGCACCACGGTCGGCAGCG
GCGGGCGGAGCAGCAGGGGTTGGTGGGTCGCAGATGATGGAGACTCCTAG
ACCCGCACAGAAAAAGGGCAAGCGCCCGGCCAAGGAAGCGAGTGCGGCGG
CGAATACGATGCACGGGAACATCGTCAACTGCTGGGCCGCAGCAACAACC
AAGCCGCAAAAAACTCGTGTTCTTCATGCACAAGGAAAGGCAGTGCCGGT
TTCAGAAGCATCCAACGGCAACCTCGAGAGGTTGCCGAGGTTTGTTGATG
TCGGCTACATAAAGGAGAGCAGCCACAAAGATTCCATCAAGAAGCACGTG
ATGGCCAACAAGCCCATCGATGACAAGTTCTGGTCGCATGTGGAGCGCAT
GGCCAACTTGCTGTCCAGCGGCATGTTTACGGCGGAAGACCACCGAGAGT
TGCTAGATGCAAAAGTTGCAGACCTTTTGCGAGACGGAGCACCACGGTCG
GCAGCGGCGGGCGGAGCAGCAGGGGTTGGTGGGTCGCAGATGATGGAGAC
TCCTAGACCCGCACAGAAAAAGGGCAAGCGCCCGGCCAAGGAAGCGAGTG
CGGCGGCGAATACGATGCACGGGAACATCGTCAACTGCTGGGCCGCAGCA
ACAACCAAGCCGATCAAGCGTACCCGCAATGGCATCGTGGAGGAAGTCAC
CCGCGTCCACTATCCCATCGCACTACCTCCTCCCAAGATCAAGCGTACCC
GCAATGGCATCGTGGAGGAAGTCACCCGCGTCCACTATCCCATCGCACTA
CCTCCTCCCAAG
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