mRNA_P-fluviatile_contig108.974.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig108.974.1
Unique NamemRNA_P-fluviatile_contig108.974.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig108.974.1 vs. uniprot
Match: A0A2E8YXX7_9ACTN (50S ribosomal protein L14 n=1 Tax=Nocardioides sp. TaxID=35761 RepID=A0A2E8YXX7_9ACTN)

HSP 1 Score: 160 bits (405), Expect = 2.770e-48
Identity = 83/127 (65.35%), Postives = 96/127 (75.59%), Query Frame = 1
Query:   37 MVQKGCFLKVLDNSGAKIVYCIRIISNSNKRYATIGSLLLVSIKNLRTKRRFSSKVKAGSTVRALVVRSKISKNYFFGDNLTFFENSVVLLNKQNKLIGTRIFGLLPNSLRYTRLMRLLSVCAGTRS 417
            M+QK   + V+DNSGA+ V CIRI+SN  +RYA IG LL+VSIK LR KRRF SKVK GS V+ALVVR+K+  N F GD L F+ NSVVLLN  NKLIGTRIFG LP   RYT  MRLLS+CAG R+
Sbjct:    1 MLQKESQMNVIDNSGARAVSCIRIVSNPYRRYARIGDLLIVSIKKLRKKRRFVSKVKKGSIVKALVVRTKVGYNLFSGDKLAFYSNSVVLLNNNNKLIGTRIFGFLPRFFRYTHFMRLLSLCAGIRN 127          
BLAST of mRNA_P-fluviatile_contig108.974.1 vs. uniprot
Match: A0A7T0CS15_9STRA (Ribosomal protein L14 n=1 Tax=Eucampia zodiacus TaxID=444606 RepID=A0A7T0CS15_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.190e-29
Identity = 58/124 (46.77%), Postives = 83/124 (66.94%), Query Frame = 1
Query:   37 MVQKGCFLKVLDNSGAKIVYCIRIISNSNKRYATIGSLLLVSIKNLRTKRRFSSKVKAGSTVRALVVRSKISKNYFFGDNLTFFENSVVLLNKQNKLIGTRIFGLLPNSLRYTRLMRLLSVCAG 408
            M+Q+   LKV DNSGAK V CI+++    K++A +G++++VSI+ LR K + +SKV  G   +ALV+R+K   N   G N+ F ENSV L+NKQNKLIGTRI G LP  L+  +  +  S+ +G
Sbjct:    1 MIQQQTILKVSDNSGAKTVKCIKVLGGYKKKFAKLGNVIVVSIQKLRNKSKSTSKVNKGDVCKALVLRTKKPFNIKDGSNIIFQENSVCLINKQNKLIGTRIIGPLPKILKKGKFNKFTSISSG 124          
BLAST of mRNA_P-fluviatile_contig108.974.1 vs. uniprot
Match: A0A1L4BMC9_9STRA (Ribosomal protein L14 n=1 Tax=Didymosphenia geminata TaxID=1115533 RepID=A0A1L4BMC9_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.400e-27
Identity = 57/121 (47.11%), Postives = 81/121 (66.94%), Query Frame = 1
Query:   37 MVQKGCFLKVLDNSGAKIVYCIRIISNSNKRYATIGSLLLVSIKNLRTKRRFSSKVKAGSTVRALVVRSKISKNYFFGDNLTFFENSVVLLNKQNKLIGTRIFGLLPNSLRYTRLMRLLSV 399
            M+Q+   LKV DNSGAK V CI+++    K+ A IG L++VS++NLR K +++SKVK     RAL++R+K S     G   +FFENSVVL+NKQ   +GTRI G +P  L+   L ++LS+
Sbjct:    1 MIQQKSKLKVSDNSGAKTVRCIKVLGGFKKKIAKIGDLIVVSVQNLRNKMKYNSKVKKKEVYRALIIRTKNSFTKKSGFISSFFENSVVLINKQGNPLGTRIIGPVPRILKKKTLQKVLSI 121          
BLAST of mRNA_P-fluviatile_contig108.974.1 vs. uniprot
Match: A0A0U1XZM1_BERFE (Ribosomal protein L14 n=1 Tax=Berkeleya fennica TaxID=1577906 RepID=A0A0U1XZM1_BERFE)

HSP 1 Score: 105 bits (263), Expect = 9.670e-27
Identity = 54/124 (43.55%), Postives = 80/124 (64.52%), Query Frame = 1
Query:   37 MVQKGCFLKVLDNSGAKIVYCIRIISNSNKRYATIGSLLLVSIKNLRTKRRFSSKVKAGSTVRALVVRSKISKNYFFGDNLTFFENSVVLLNKQNKLIGTRIFGLLPNSLRYTRLMRLLSVCAG 408
            M+Q+   LKV DNSGAK V CI+++    K+YA +GS+++VSI+ LR K + +SKVK     +AL++R+K       G  L F ENSV L+NKQ   IGTRI G +P +L+ +   + +S+ +G
Sbjct:    1 MIQQRTILKVSDNSGAKTVRCIKVLGGFKKKYAKLGSVIIVSIQQLRNKSKKTSKVKKKEVYKALIIRTKSKNRKKDGSELIFNENSVALINKQGSPIGTRIMGPIPRTLKKSVFKKFISISSG 124          
BLAST of mRNA_P-fluviatile_contig108.974.1 vs. uniprot
Match: A0A0U2KGM5_FISSO (Ribosomal protein L14 n=2 Tax=Fistulifera TaxID=880756 RepID=A0A0U2KGM5_FISSO)

HSP 1 Score: 105 bits (262), Expect = 1.370e-26
Identity = 53/124 (42.74%), Postives = 79/124 (63.71%), Query Frame = 1
Query:   37 MVQKGCFLKVLDNSGAKIVYCIRIISNSNKRYATIGSLLLVSIKNLRTKRRFSSKVKAGSTVRALVVRSKISKNYFFGDNLTFFENSVVLLNKQNKLIGTRIFGLLPNSLRYTRLMRLLSVCAG 408
            M+Q+   LKV DNSGAK V CIR++    K+YA +G  ++VS++ LR K + +SKVK G   +AL++R+K+      G  + F ENSVVL+NKQ   + TRI G LP  L+  +  + +S+ +G
Sbjct:    1 MIQQQTILKVSDNSGAKTVRCIRVLGGFRKKYAKLGDNIIVSVQQLRNKSKKTSKVKKGEVYKALIIRTKVPHKKKDGSQIWFGENSVVLVNKQENPVSTRIIGPLPKLLKKKKFQKFISMSSG 124          
BLAST of mRNA_P-fluviatile_contig108.974.1 vs. uniprot
Match: A0A2Z5ZAF8_9STRA (Ribosomal protein L14 n=7 Tax=Nitzschia TaxID=2857 RepID=A0A2Z5ZAF8_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.050e-26
Identity = 55/124 (44.35%), Postives = 79/124 (63.71%), Query Frame = 1
Query:   37 MVQKGCFLKVLDNSGAKIVYCIRIISNSNKRYATIGSLLLVSIKNLRTKRRFSSKVKAGSTVRALVVRSKISKNYFFGDNLTFFENSVVLLNKQNKLIGTRIFGLLPNSLRYTRLMRLLSVCAG 408
            M+Q+   LKV+DNSGAK V CI+++    +RYA++G L++VS++ LR K + +SKV  G   RALVVR+K       G      EN+ VL+NKQ   IGTRI G +P SL+  + M+ +S+  G
Sbjct:    1 MIQQESILKVVDNSGAKTVKCIKVLGGFKRRYASLGDLIVVSVQQLRNKSKSTSKVLKGGVFRALVVRTKKQCKKRDGSLFLLEENAAVLINKQGNPIGTRILGPIPKSLKKKKFMKFISLSVG 124          
BLAST of mRNA_P-fluviatile_contig108.974.1 vs. uniprot
Match: A0A8D8WNX6_9HEMI (60S ribosomal protein L23 n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8WNX6_9HEMI)

HSP 1 Score: 103 bits (257), Expect = 6.980e-26
Identity = 52/121 (42.98%), Postives = 81/121 (66.94%), Query Frame = 1
Query:   37 MVQKGCFLKVLDNSGAKIVYCIRIISNSNKRYATIGSLLLVSIKNLRTKRRFSSKVKAGSTVRALVVRSKISKNYFFGDNLTFFENSVVLLNKQNKLIGTRIFGLLPNSLRYTRLMRLLSV 399
            M+Q+   LK++DNSGAKI  CI+I++ S K YA IG L+ V IKN      F+SK+K G  ++A++VR+K       G  L+F +N+++LLN QN++IGTR+FG+L   ++     +L+S+
Sbjct:    1 MIQEQTILKIIDNSGAKIGKCIKILNGSKKIYAKIGDLIKVVIKNSN----FNSKIKKGQVIKAIIVRTKFPFKRNDGTTLSFSDNAIILLNNQNQMIGTRVFGVLAREIKSIYFNKLISL 117          
BLAST of mRNA_P-fluviatile_contig108.974.1 vs. uniprot
Match: A0A8F0WGH3_9STRA (Ribosomal protein L14 n=1 Tax=Tryblionella apiculata TaxID=1003145 RepID=A0A8F0WGH3_9STRA)

HSP 1 Score: 103 bits (257), Expect = 7.810e-26
Identity = 53/124 (42.74%), Postives = 77/124 (62.10%), Query Frame = 1
Query:   37 MVQKGCFLKVLDNSGAKIVYCIRIISNSNKRYATIGSLLLVSIKNLRTKRRFSSKVKAGSTVRALVVRSKISKNYFFGDNLTFFENSVVLLNKQNKLIGTRIFGLLPNSLRYTRLMRLLSVCAG 408
            M+Q+   LKV DNSGAKIV CI+++    KRYA +G ++++S++ LR K + +SKV  G   RALV+R+K       G      EN+V L+NKQ   IGTR+ G LP  L+  + M+ +S+  G
Sbjct:    1 MIQQESILKVADNSGAKIVKCIKVLGGFKKRYANLGDIIVISVQQLRNKSKKTSKVLKGGVFRALVIRTKNKYKRKDGSLFVLQENAVALINKQGNPIGTRVLGPLPKVLKKKKFMKFVSLSVG 124          
BLAST of mRNA_P-fluviatile_contig108.974.1 vs. uniprot
Match: A0A0K2RWH3_9STRA (Ribosomal protein L14 n=1 Tax=Triparma laevis TaxID=1534972 RepID=A0A0K2RWH3_9STRA)

HSP 1 Score: 101 bits (251), Expect = 6.310e-25
Identity = 52/124 (41.94%), Postives = 80/124 (64.52%), Query Frame = 1
Query:   37 MVQKGCFLKVLDNSGAKIVYCIRIISNSNKRYATIGSLLLVSIKNLRTKRRFSSKVKAGSTVRALVVRSKISKNYFFGDNLTFFENSVVLLNKQNKLIGTRIFGLLPNSLRYTRLMRLLSVCAG 408
            M+Q    LK+ DNSGAKIV CI+++    +RYA  G  ++V+++ +R K +  SKV  G   RA++VR+K  K    G  ++F +NS VL+NKQNK I TRI G +   ++  +LM+L+S+ +G
Sbjct:    1 MIQNQTLLKITDNSGAKIVRCIKVLGGFQRRYAYAGETIVVAVQKIRNKNKHLSKVAKGDISRAVIVRTKAKKKKQDGLFISFTKNSAVLVNKQNKPIATRIKGPITQDVKKNKLMKLVSLSSG 124          
BLAST of mRNA_P-fluviatile_contig108.974.1 vs. uniprot
Match: A0A1G6BMF7_9DELT (50S ribosomal protein L14 n=5 Tax=Desulfovibrionales TaxID=213115 RepID=A0A1G6BMF7_9DELT)

HSP 1 Score: 100 bits (248), Expect = 1.600e-24
Identity = 53/121 (43.80%), Postives = 78/121 (64.46%), Query Frame = 1
Query:   37 MVQKGCFLKVLDNSGAKIVYCIRIISNSNKRYATIGSLLLVSIKNLRTKRRFSSKVKAGSTVRALVVRSKISKNYFFGDNLTFFENSVVLLNKQNKLIGTRIFGLLPNSLRYTRLMRLLSV 399
            M+Q    L V DNSGAK V+C++++  S++RYA+IG +++VS+K         SKVK G  +RA++VR+K   N   G  + F  NS VLLNKQN+ +GTRIFG +   LR    M+++S+
Sbjct:    1 MIQVQSMLDVADNSGAKKVFCVKVLGGSHRRYASIGDIIVVSVKEAMP----HSKVKKGEVMRAVIVRTKKEVNRPDGSFIRFDNNSAVLLNKQNEPVGTRIFGPVARELRSKNFMKIVSL 117          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig108.974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8YXX7_9ACTN2.770e-4865.3550S ribosomal protein L14 n=1 Tax=Nocardioides sp.... [more]
A0A7T0CS15_9STRA5.190e-2946.77Ribosomal protein L14 n=1 Tax=Eucampia zodiacus Ta... [more]
A0A1L4BMC9_9STRA3.400e-2747.11Ribosomal protein L14 n=1 Tax=Didymosphenia gemina... [more]
A0A0U1XZM1_BERFE9.670e-2743.55Ribosomal protein L14 n=1 Tax=Berkeleya fennica Ta... [more]
A0A0U2KGM5_FISSO1.370e-2642.74Ribosomal protein L14 n=2 Tax=Fistulifera TaxID=88... [more]
A0A2Z5ZAF8_9STRA2.050e-2644.35Ribosomal protein L14 n=7 Tax=Nitzschia TaxID=2857... [more]
A0A8D8WNX6_9HEMI6.980e-2642.9860S ribosomal protein L23 n=1 Tax=Cacopsylla melan... [more]
A0A8F0WGH3_9STRA7.810e-2642.74Ribosomal protein L14 n=1 Tax=Tryblionella apicula... [more]
A0A0K2RWH3_9STRA6.310e-2541.94Ribosomal protein L14 n=1 Tax=Triparma laevis TaxI... [more]
A0A1G6BMF7_9DELT1.600e-2443.8050S ribosomal protein L14 n=5 Tax=Desulfovibrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig108contigP-fluviatile_contig108:23865..24284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score97.8
Seed ortholog evalue4.2e-18
Seed eggNOG ortholog96561.Dole_0718
Preferred namerplN
KEGG koko:K02874
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0008150,GO:0015934,GO:0016020,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0040007,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071944,GO:0097159,GO:1901363,GO:1990904
EggNOG free text desc.Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
EggNOG OGs1RCWZ@1224,2MJSK@213118,2WNEK@28221,42RHR@68525,COG0093@1,COG0093@2
COG Functional cat.J
Best tax levelDesulfobacterales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size420
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815424.4076202-CDS-P-fluviatile_contig108:23864..242841622815424.4076202-CDS-P-fluviatile_contig108:23864..24284Porterinema fluviatile SAG_2381CDSP-fluviatile_contig108 23865..24284 +
1693561802.8196056-CDS-P-fluviatile_contig108:23864..242841693561802.8196056-CDS-P-fluviatile_contig108:23864..24284Porterinema fluviatile SAG_2381CDSP-fluviatile_contig108 23865..24284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig108.974.1prot_P-fluviatile_contig108.974.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig108 23865..24284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig108.974.1

>prot_P-fluviatile_contig108.974.1 ID=prot_P-fluviatile_contig108.974.1|Name=mRNA_P-fluviatile_contig108.974.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=140bp
FKYLDFIIYIYSMVQKGCFLKVLDNSGAKIVYCIRIISNSNKRYATIGSL
LLVSIKNLRTKRRFSSKVKAGSTVRALVVRSKISKNYFFGDNLTFFENSV
VLLNKQNKLIGTRIFGLLPNSLRYTRLMRLLSVCAGTRS*
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mRNA from alignment at P-fluviatile_contig108:23865..24284+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig108.974.1 ID=mRNA_P-fluviatile_contig108.974.1|Name=mRNA_P-fluviatile_contig108.974.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=420bp|location=Sequence derived from alignment at P-fluviatile_contig108:23865..24284+ (Porterinema fluviatile SAG_2381)
TTTAAATATTTAGATTTTATTATATATATATATAGTATGGTACAAAAAGG TTGCTTTTTAAAAGTTTTAGACAACTCAGGGGCTAAAATAGTCTACTGTA TAAGAATTATTTCAAACTCAAATAAACGATACGCTACTATTGGTAGTCTT CTATTAGTTTCAATTAAAAATTTACGCACAAAGCGTCGTTTTTCATCTAA AGTAAAAGCCGGTTCTACGGTTCGAGCTTTAGTAGTTCGTAGTAAAATTT CTAAAAACTATTTTTTCGGTGATAATTTAACATTTTTTGAAAATTCTGTT GTTTTATTAAACAAACAAAACAAATTAATTGGAACTCGCATATTTGGCCT TTTACCAAATTCATTACGTTATACACGTTTAATGAGGCTTTTATCTGTTT GTGCAGGTACTCGCTCTTAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig108:23865..24284+

>mRNA_P-fluviatile_contig108.974.1 ID=mRNA_P-fluviatile_contig108.974.1|Name=mRNA_P-fluviatile_contig108.974.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=840bp|location=Sequence derived from alignment at P-fluviatile_contig108:23865..24284+ (Porterinema fluviatile SAG_2381)
TTTAAATATTTAGATTTTATTATATATATATATAGTATGGTACAAAAAGG
TTGCTTTTTAAAAGTTTTAGACAACTCAGGGGCTAAAATAGTCTACTGTA
TAAGAATTATTTCAAACTCAAATAAACGATACGCTACTATTGGTAGTCTT
CTATTAGTTTCAATTAAAAATTTACGCACAAAGCGTCGTTTTTCATCTAA
AGTAAAAGCCGGTTCTACGGTTCGAGCTTTAGTAGTTCGTAGTAAAATTT
CTAAAAACTATTTTTTCGGTGATAATTTAACATTTTTTGAAAATTCTGTT
GTTTTATTAAACAAACAAAACAAATTAATTGGAACTCGCATATTTGGCCT
TTTACCAAATTCATTACGTTATACACGTTTAATGAGGCTTTTATCTGTTT
GTGCAGGTACTCGCTCTTAATTTAAATATTTAGATTTTATTATATATATA
TATAGTATGGTACAAAAAGGTTGCTTTTTAAAAGTTTTAGACAACTCAGG
GGCTAAAATAGTCTACTGTATAAGAATTATTTCAAACTCAAATAAACGAT
ACGCTACTATTGGTAGTCTTCTATTAGTTTCAATTAAAAATTTACGCACA
AAGCGTCGTTTTTCATCTAAAGTAAAAGCCGGTTCTACGGTTCGAGCTTT
AGTAGTTCGTAGTAAAATTTCTAAAAACTATTTTTTCGGTGATAATTTAA
CATTTTTTGAAAATTCTGTTGTTTTATTAAACAAACAAAACAAATTAATT
GGAACTCGCATATTTGGCCTTTTACCAAATTCATTACGTTATACACGTTT
AATGAGGCTTTTATCTGTTTGTGCAGGTACTCGCTCTTAA
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