mRNA_P-fluviatile_contig106.967.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig106.967.1
Unique NamemRNA_P-fluviatile_contig106.967.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig106.967.1 vs. uniprot
Match: A0A382F2J5_9ZZZZ (Resolvase/invertase-type recombinase catalytic domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382F2J5_9ZZZZ)

HSP 1 Score: 156 bits (394), Expect = 5.110e-45
Identity = 84/183 (45.90%), Postives = 118/183 (64.48%), Query Frame = 1
Query:    7 IMSDDLLSWEKKGKIKVIKTPSGH*RYKIDKVFG----GTLGSERRKIAYCRVSSPKQKKDLLSQENLLREKVPEHEIYSDIGSGINFKRKSFRKMVQLVLQGSVEELVVSHRDRLCRIAFSFFEWLCEEYDTKLLVQDHDIRSAEEELTDDLLCIIHVFSCGRYRIRRYRAKDANNGDKGQD 543
            + +  L  W+K+ KIK I+TPS + RY I  V       ++   ++K+ YCRVSS KQ  DL  Q++ L+ K P HEI SDIGSGIN+KRK    +++    G +EE+VV+H+DRL R AF   +WL E+   KL+V +  I S EE+LTDD+L IIH+FSC +  +R+Y+ KD  + DK QD
Sbjct:   14 VSTSTLRRWDKQNKIKTIRTPSNYRRYDISSVKQTKNKNSIVMSKKKMCYCRVSSKKQMDDLERQKDYLKSKYPNHEIISDIGSGINWKRKGLLSILEQSNNGLIEEVVVAHKDRLARFAFELIQWLLEKNGCKLVVLNEPI-SEEEKLTDDILSIIHIFSCRKMGMRKYK-KDGKSKDKTQD 194          
BLAST of mRNA_P-fluviatile_contig106.967.1 vs. uniprot
Match: A0A662S372_9ARCH (IS607 family transposase n=1 Tax=Candidatus Korarchaeota archaeon TaxID=2056630 RepID=A0A662S372_9ARCH)

HSP 1 Score: 154 bits (389), Expect = 2.510e-44
Identity = 78/175 (44.57%), Postives = 106/175 (60.57%), Query Frame = 1
Query:    7 IMSDDLLSWEKKGKIKVIKTPSGH*RYKIDKVFGGTLGSERRKIAYCRVSSPKQKKDLLSQENLLREKVPEHEIYSDIGSGINFKRKSFRKMVQLVLQGSVEELVVSHRDRLCRIAFSFFEWLCEEYDTKLLVQDHDIRSAEEELTDDLLCIIHVFSCGRYRIRRYRAKDANNGD 531
            I  + L  W  +G+I  ++ P GH  Y +D         +R K  Y RVSS +Q  DL +Q   LRE+ P HE   D GSG+NFKRK F K+++ VL G+V E+VV+H+DRLCR  F FF+ + E +D KL+V D    S +EEL  DL+ IIHVFSC  Y +R+Y +K   + D
Sbjct:   13 IHPNTLRRWANEGRINYVRQPQGHRLYDVDSFLNQGKKIDRVKFIYARVSSRRQADDLSNQIKYLRERYPTHEFLQDYGSGLNFKRKGFCKLLEQVLSGAVSEIVVTHKDRLCRFGFDFFQKIAEHFDCKLVVLDEVKLSPQEELIQDLISIIHVFSCRIYGLRKYPSKIKEDKD 187          
BLAST of mRNA_P-fluviatile_contig106.967.1 vs. uniprot
Match: A0A6P0SVG0_9CYAN (IS607 family transposase n=2 Tax=unclassified Moorena TaxID=2683338 RepID=A0A6P0SVG0_9CYAN)

HSP 1 Score: 152 bits (384), Expect = 2.160e-43
Identity = 75/171 (43.86%), Postives = 105/171 (61.40%), Query Frame = 1
Query:   31 WEKKGKIKVIKTPSGH*RYKIDKVFG----GTLGSERRKIAYCRVSSPKQKKDLLSQENLLREKVPEHEIYSDIGSGINFKRKSFRKMVQLVLQGSVEELVVSHRDRLCRIAFSFFEWLCEEYDTKLLVQDHDIRSAEEELTDDLLCIIHVFSCGRYRIRRYRAKDANNGD 531
            W ++GKI+ IKTP G  RY +D V       T   +R  I Y RVSS  QK DL  Q   L+ + P+ EI  D+GSG+NFKRK  + ++  VL G+ + +VV+H+DRLCR  F    WLC ++ TK+LV D    S E+E+ +D+L +IHVFSC  Y +R+Y+ K   + D
Sbjct:   27 WLEEGKIQGIKTPGGQRRYDLDSVVSIPTKKTDRGDRATILYARVSSRSQKNDLEQQVQFLKSRYPKAEIIKDVGSGLNFKRKGLQSLLDRVLNGTCKYIVVAHKDRLCRFGFDLISWLCSKFQTKILVLDEKNLSPEQEMVEDVLAVIHVFSCRLYGLRKYKKKIIEDND 197          
BLAST of mRNA_P-fluviatile_contig106.967.1 vs. uniprot
Match: A0A1W9L0A6_9GAMM (DNA invertase n=1 Tax=Beggiatoa sp. IS2 TaxID=1934247 RepID=A0A1W9L0A6_9GAMM)

HSP 1 Score: 150 bits (379), Expect = 8.140e-43
Identity = 76/175 (43.43%), Postives = 108/175 (61.71%), Query Frame = 1
Query:    7 IMSDDLLSWEKKGKIKVIKTPSGH*RYKIDKVFGGTLGSERRKIAYCRVSSPKQKKDLLSQENLLREKVPEHEIYSDIGSGINFKRKSFRKMVQLVLQGSVEELVVSHRDRLCRIAFSFFEWLCEEYDTKLLVQDHDIRSAEEELTDDLLCIIHVFSCGRYRIRRYRAKDANNGD 531
            + S+ L +W++ GKIK ++TP G   Y +D     +L S+RRK  Y RVSS  QK DL SQ   L+ + P HE+  DIGSG+NFKRK    +++LV+ G V E++V+H+DRLCR  +   E +  +   K++V D    S + EL +DLL IIHVFSC  Y +R+Y  K   + D
Sbjct:   15 VHSNTLRNWDRDGKIKTMRTPGGIRLYDLD-----SLESDRRKFIYARVSSRNQKDDLNSQIEYLKTRFPNHELIEDIGSGLNFKRKGLNTLLELVMSGQVSEIIVTHKDRLCRFGYELIEAIATKNSCKIMVLDESKLSPQAELVNDLLSIIHVFSCRLYGLRKYSRKIKEDTD 184          
BLAST of mRNA_P-fluviatile_contig106.967.1 vs. uniprot
Match: A0A6P0IUF8_9CYAN (IS607 family transposase n=3 Tax=unclassified Moorena TaxID=2683338 RepID=A0A6P0IUF8_9CYAN)

HSP 1 Score: 150 bits (379), Expect = 1.230e-42
Identity = 75/173 (43.35%), Postives = 104/173 (60.12%), Query Frame = 1
Query:    7 IMSDDLLSWEKKGKIKVIKTPSGH*RYKIDKVFG----GTLGSERRKIAYCRVSSPKQKKDLLSQENLLREKVPEHEIYSDIGSGINFKRKSFRKMVQLVLQGSVEELVVSHRDRLCRIAFSFFEWLCEEYDTKLLVQDHDIRSAEEELTDDLLCIIHVFSCGRYRIRRYRAK 513
            + +  L  W  +GKI+ I+TP G  RY +D V       T    R  I Y RVSS  QK DL  Q   L+ + P+ EI  DIGSG+NF RK  R ++  VL G+ + +VV+H+DRLCR  F    WLC +++TK+LV D    S E+E+ +D+L +IHVFSC  Y +R+Y+ K
Sbjct:   19 VSTKTLERWLNEGKIQGIRTPGGQRRYDLDSVVSIPCTKTTTDNRATILYARVSSRSQKNDLEQQVQFLKSRYPDAEIIRDIGSGLNFSRKGLRTLLDRVLDGTCKYIVVAHKDRLCRFGFDLVSWLCSKFETKILVLDEKNLSPEQEMVEDVLAVIHVFSCRLYGLRKYKQK 191          
BLAST of mRNA_P-fluviatile_contig106.967.1 vs. uniprot
Match: A0A6P0SSH2_9CYAN (IS607 family transposase n=5 Tax=unclassified Moorena TaxID=2683338 RepID=A0A6P0SSH2_9CYAN)

HSP 1 Score: 150 bits (378), Expect = 1.690e-42
Identity = 75/178 (42.13%), Postives = 108/178 (60.67%), Query Frame = 1
Query:    7 IMSDDLLSWEKKGKIKVIKTPSGH*RYKIDKVFG---GTLGSERRKIAYCRVSSPKQKKDLLSQENLLREKVPEHEIYSDIGSGINFKRKSFRKMVQLVLQGSVEELVVSHRDRLCRIAFSFFEWLCEEYDTKLLVQDHDIRSAEEELTDDLLCIIHVFSCGRYRIRRYRAKDANNGD 531
            + +  L  W + GKI+ IKTP G  RY ++ V       + ++R  I Y RVSS  QK DL  Q   L+ + P+ EI  DIGSG+NFKRK  + ++  V+ GS + +VV+H+DRLCR  F    WLC ++ TK+LV D    S E+E+ +D+L +IHVFSC  Y +R+Y+ K   + D
Sbjct:   19 VSTKTLERWLESGKIQGIKTPGGQRRYDLNSVVSIRSEKIRTDRSTILYARVSSRSQKNDLEQQVQFLQSRYPDAEIIKDIGSGLNFKRKGLQALLDRVIGGSCKYVVVAHKDRLCRFGFDLISWLCSKFQTKILVLDEKNLSPEQEMVEDVLAVIHVFSCRLYGLRKYKNKILEDND 196          
BLAST of mRNA_P-fluviatile_contig106.967.1 vs. uniprot
Match: A0A6P0PP25_9CYAN (IS607 family transposase n=7 Tax=unclassified Moorena TaxID=2683338 RepID=A0A6P0PP25_9CYAN)

HSP 1 Score: 149 bits (377), Expect = 2.460e-42
Identity = 75/165 (45.45%), Postives = 101/165 (61.21%), Query Frame = 1
Query:   31 WEKKGKIKVIKTPSGH*RYKIDKVFG----GTLGSERRKIAYCRVSSPKQKKDLLSQENLLREKVPEHEIYSDIGSGINFKRKSFRKMVQLVLQGSVEELVVSHRDRLCRIAFSFFEWLCEEYDTKLLVQDHDIRSAEEELTDDLLCIIHVFSCGRYRIRRYRAK 513
            W  +GKI+ IKTP G  RY +D V       T   ER  I Y RVSS  Q+ DL  Q   L+ + P+ E+  DIGSG+NFKRK    ++  VL G+ + +VV+H+DRLCR  F    WLC ++ TK+LV D    S E+E+ +D+L IIHVFSC  Y +R+Y+ K
Sbjct:   27 WLDEGKIQGIKTPGGQRRYNLDSVVSISTKKTDRDERATILYARVSSRSQRDDLDQQVQFLKSRYPDAEVIRDIGSGLNFKRKGLHSLLDRVLSGTCKYIVVAHKDRLCRFGFDLISWLCSKFKTKILVLDEKNLSPEQEMVEDVLAIIHVFSCRLYGLRKYKRK 191          
BLAST of mRNA_P-fluviatile_contig106.967.1 vs. uniprot
Match: A0A6P0Y415_9CYAN (IS607 family transposase n=1 Tax=Okeania sp. SIO2D1 TaxID=2607792 RepID=A0A6P0Y415_9CYAN)

HSP 1 Score: 149 bits (375), Expect = 4.790e-42
Identity = 71/170 (41.76%), Postives = 108/170 (63.53%), Query Frame = 1
Query:   22 LLSWEKKGKIKVIKTPSGH*RYKIDKVFGGTLGSERRKIAYCRVSSPKQKKDLLSQENLLREKVPEHEIYSDIGSGINFKRKSFRKMVQLVLQGSVEELVVSHRDRLCRIAFSFFEWLCEEYDTKLLVQDHDIRSAEEELTDDLLCIIHVFSCGRYRIRRYRAKDANNGD 531
            L+ WE+ GKIK IKTPSG  RY ++   GG +   R  + Y RVSS  Q+ DL  Q   +    P  EI S+IG G+NFKRK    +++ V+QG+VE ++++H+DRL R  F F++WLCE++D ++LV +    S E E+ +D+L I+H FS   Y +R+Y+ + + + D
Sbjct:   26 LVRWEQDGKIKAIKTPSGQRRYDVESYTGG-ISLSRHTVIYARVSSRNQQGDLNRQIAAISNLYPTAEIISEIGGGLNFKRKKLLALLERVMQGNVERIIIAHKDRLARFGFDFYQWLCEQFDCQILVLNEKNLSPEAEMVEDILAILHCFSSRLYGLRKYKTEISKDRD 194          
BLAST of mRNA_P-fluviatile_contig106.967.1 vs. uniprot
Match: UPI0009F34F4B (IS607 family transposase n=1 Tax=Moorena producens TaxID=1155739 RepID=UPI0009F34F4B)

HSP 1 Score: 147 bits (372), Expect = 9.020e-42
Identity = 71/170 (41.76%), Postives = 106/170 (62.35%), Query Frame = 1
Query:    1 LIIMSDDLLSWEKKGKIKVIKTPSGH*RYKIDKVFGGTLGSERRKIAYCRVSSPKQKKDLLSQENLLREKVPEHEIYSDIGSGINFKRKSFRKMVQLVLQGSVEELVVSHRDRLCRIAFSFFEWLCEEYDTKLLVQDHDIRSAEEELTDDLLCIIHVFSCGRYRIRRYRA 510
            L +    L +WEK GKIK I+TPS   RY +D V G     ++  I Y RVS+ +QK+DL  Q   L+ K PE E+  DIG+G+N++RK  + ++  VL   V E+VV+H+DR+ R  F   EW+CE+   +++V D    S E E+ +D+L I+HVFSC  Y +R+Y++
Sbjct:   13 LAVSEKTLRNWEKAGKIKSIRTPSNQRRYDVDSVLGRV--KDKPTIIYARVSTRRQKEDLERQAAFLQGKFPEAEVIKDIGTGLNYRRKGLKALLGRVLSRDVSEIVVAHKDRMARFGFELIEWICEQNGCRIVVLDQSNLSDEREMVEDILAIVHVFSCRLYGLRKYKS 180          
BLAST of mRNA_P-fluviatile_contig106.967.1 vs. uniprot
Match: A0A1U7MZ12_9CYAN (DNA invertase n=12 Tax=Moorena TaxID=1155738 RepID=A0A1U7MZ12_9CYAN)

HSP 1 Score: 147 bits (370), Expect = 2.420e-41
Identity = 73/162 (45.06%), Postives = 100/162 (61.73%), Query Frame = 1
Query:   31 WEKKGKIKVIKTPSGH*RYKIDKVFGGTLGSERRKIA-YCRVSSPKQKKDLLSQENLLREKVPEHEIYSDIGSGINFKRKSFRKMVQLVLQGSVEELVVSHRDRLCRIAFSFFEWLCEEYDTKLLVQDHDIRSAEEELTDDLLCIIHVFSCGRYRIRRYRAK 513
            W + GKIK IKTP G  RY +D V        +R I  Y RVSS  QK DL  Q   L+ + P  E+  DIGSG+NFKRK  + ++  VL  + E +VV+H+DRLCR  F    WLC +++TK+LV D    S E+E+ +D+L I+HVFSC  Y +R+Y+ +
Sbjct:   25 WLEAGKIKGIKTPGGQRRYDLDSVVSIPPAKPKRDIILYARVSSRSQKSDLEQQVRFLKSRYPGCEVIFDIGSGLNFKRKGLQSLLDRVLSNTCELIVVAHKDRLCRFGFDLISWLCGKFETKILVLDETHLSPEQEMVEDILAIVHVFSCRLYGLRKYKKR 186          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig106.967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A382F2J5_9ZZZZ5.110e-4545.90Resolvase/invertase-type recombinase catalytic dom... [more]
A0A662S372_9ARCH2.510e-4444.57IS607 family transposase n=1 Tax=Candidatus Korarc... [more]
A0A6P0SVG0_9CYAN2.160e-4343.86IS607 family transposase n=2 Tax=unclassified Moor... [more]
A0A1W9L0A6_9GAMM8.140e-4343.43DNA invertase n=1 Tax=Beggiatoa sp. IS2 TaxID=1934... [more]
A0A6P0IUF8_9CYAN1.230e-4243.35IS607 family transposase n=3 Tax=unclassified Moor... [more]
A0A6P0SSH2_9CYAN1.690e-4242.13IS607 family transposase n=5 Tax=unclassified Moor... [more]
A0A6P0PP25_9CYAN2.460e-4245.45IS607 family transposase n=7 Tax=unclassified Moor... [more]
A0A6P0Y415_9CYAN4.790e-4241.76IS607 family transposase n=1 Tax=Okeania sp. SIO2D... [more]
UPI0009F34F4B9.020e-4241.76IS607 family transposase n=1 Tax=Moorena producens... [more]
A0A1U7MZ12_9CYAN2.420e-4145.06DNA invertase n=12 Tax=Moorena TaxID=1155738 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig106contigP-fluviatile_contig106:44689..45231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score80.9
Seed ortholog evalue3.3e-13
Seed eggNOG ortholog32057.KB217478_gene1459
EggNOG free text desc.Resolvase, N terminal domain
EggNOG OGs1G4P1@1117,1HPMH@1161,COG2452@1,COG2452@2
COG Functional cat.L
Best tax levelNostocales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size543
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815423.8664405-CDS-P-fluviatile_contig106:44688..449521622815423.8664405-CDS-P-fluviatile_contig106:44688..44952Porterinema fluviatile SAG_2381CDSP-fluviatile_contig106 44689..44952 -
1693561799.535917-CDS-P-fluviatile_contig106:44688..449521693561799.535917-CDS-P-fluviatile_contig106:44688..44952Porterinema fluviatile SAG_2381CDSP-fluviatile_contig106 44689..44952 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815423.8783276-UTR-P-fluviatile_contig106:44952..452311622815423.8783276-UTR-P-fluviatile_contig106:44952..45231Porterinema fluviatile SAG_2381UTRP-fluviatile_contig106 44953..45231 -
1693561799.5478387-UTR-P-fluviatile_contig106:44952..452311693561799.5478387-UTR-P-fluviatile_contig106:44952..45231Porterinema fluviatile SAG_2381UTRP-fluviatile_contig106 44953..45231 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig106.967.1prot_P-fluviatile_contig106.967.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig106 44689..44952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig106.967.1

>prot_P-fluviatile_contig106.967.1 ID=prot_P-fluviatile_contig106.967.1|Name=mRNA_P-fluviatile_contig106.967.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=88bp
MVQLVLQGSVEELVVSHRDRLCRIAFSFFEWLCEEYDTKLLVQDHDIRSA
EEELTDDLLCIIHVFSCGRYRIRRYRAKDANNGDKGQD
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mRNA from alignment at P-fluviatile_contig106:44689..45231-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig106.967.1 ID=mRNA_P-fluviatile_contig106.967.1|Name=mRNA_P-fluviatile_contig106.967.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=543bp|location=Sequence derived from alignment at P-fluviatile_contig106:44689..45231- (Porterinema fluviatile SAG_2381)
CTCATCATCATGTCAGATGACCTCCTGTCTTGGGAAAAGAAAGGAAAGAT CAAGGTTATTAAAACTCCAAGCGGACATTGACGATACAAGATCGACAAGG TTTTTGGAGGAACTCTTGGTTCAGAAAGGCGAAAGATTGCCTACTGCAGA GTCAGCTCTCCGAAGCAGAAAAAAGATTTGCTTAGCCAGGAAAACTTGCT GCGAGAAAAAGTACCCGAACACGAGATCTACTCCGACATCGGCTCCGGCA TCAACTTCAAGAGAAAATCATTCCGTAAAATGGTTCAACTCGTACTGCAA GGATCTGTCGAAGAGCTTGTGGTATCCCACCGTGACCGACTCTGTCGAAT CGCCTTTAGCTTCTTTGAGTGGCTGTGTGAAGAATACGACACGAAACTCC TGGTCCAAGATCACGACATTCGATCTGCCGAAGAAGAGCTTACCGACGAC CTTCTTTGCATCATTCACGTATTCAGTTGCGGAAGGTACAGGATTCGAAG ATACAGGGCCAAGGATGCTAACAACGGCGACAAAGGTCAGGAT
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Coding sequence (CDS) from alignment at P-fluviatile_contig106:44689..45231-

>mRNA_P-fluviatile_contig106.967.1 ID=mRNA_P-fluviatile_contig106.967.1|Name=mRNA_P-fluviatile_contig106.967.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=528bp|location=Sequence derived from alignment at P-fluviatile_contig106:44689..45231- (Porterinema fluviatile SAG_2381)
ATGGTTCAACTCGTACTGCAAGGATCTGTCGAAGAGCTTGTGGTATCCCA
CCGTGACCGACTCTGTCGAATCGCCTTTAGCTTCTTTGAGTGGCTGTGTG
AAGAATACGACACGAAACTCCTGGTCCAAGATCACGACATTCGATCTGCC
GAAGAAGAGCTTACCGACGACCTTCTTTGCATCATTCACGTATTCAGTTG
CGGAAGGTACAGGATTCGAAGATACAGGGCCAAGGATGCTAACAACGGCG
ACAAAGGTCAGGATATGGTTCAACTCGTACTGCAAGGATCTGTCGAAGAG
CTTGTGGTATCCCACCGTGACCGACTCTGTCGAATCGCCTTTAGCTTCTT
TGAGTGGCTGTGTGAAGAATACGACACGAAACTCCTGGTCCAAGATCACG
ACATTCGATCTGCCGAAGAAGAGCTTACCGACGACCTTCTTTGCATCATT
CACGTATTCAGTTGCGGAAGGTACAGGATTCGAAGATACAGGGCCAAGGA
TGCTAACAACGGCGACAAAGGTCAGGAT
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