mRNA_P-fluviatile_contig105.955.1 (mRNA) Porterinema fluviatile SAG_2381
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-fluviatile_contig105.955.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 182 bits (463), Expect = 5.790e-54 Identity = 99/214 (46.26%), Postives = 133/214 (62.15%), Query Frame = 1 Query: 10 SEALDLISPADNLTIVSGRTFTVEWVGSGTNTEFAIYLFHGNSFSHEAGCGVFVASLCPQGGS-CLDETGDYDVVLPHPLPNVSEDGYAIGVRGGYD-TEYGCSSSFRLITEEDIPDTNE--YSLNVTAPVDGDVAIIDEQYTVEWDYLNGVGSSSDRFDIDLYSATGKSGQCGTYEEALCFKSMIGCRDSSGDYLITIPSVYLPAPIVSVLPG 639 + AL+++SP +++++ R +TVEW G+ T F I L++ NSF + CG +V +LCP G C D GDYD+++P P+ S GY + V+ D ++ GCS F LI ED P+ E YSL VT+P DGD A+ E YTVEWDY NG GSS+DRF +DLY G +G CGTY LC + IGC DS GDY + IPS PA + S+ G Sbjct: 17 ANALEVVSPDGGISVLADRAYTVEWTGTTTG-RFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSS-GYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLY-LVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSD-TPAGMYSIRVG 226
BLAST of mRNA_P-fluviatile_contig105.955.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 182 bits (462), Expect = 8.200e-54 Identity = 101/214 (47.20%), Postives = 132/214 (61.68%), Query Frame = 1 Query: 10 SEALDLISPADNLTIVSGRTFTVEWVGSGTNTEFAIYLFHGNSFSHEAGCGVFVASLCPQGGS-CLDETGDYDVVLPHPLPNVSEDGYAIGVRGGYD-TEYGCSSSFRLITEEDIPDTNE--YSLNVTAPVDGDVAIIDEQYTVEWDYLNGVGSSSDRFDIDLYSATGKSGQCGTYEEALCFKSMIGCRDSSGDYLITIPSVYLPAPIVSVLPG 639 + AL+++SPA +++++ RT+TVEW G+ +++ F I L++ SF E CG +V +LCP G C D GDYD+V+P P+ S GY + V D + GCS F L+ D P E YSL VT+P DGD A+ YTVEWDY NG+GSS+DRF IDLYS +G CGTY LC K IGC DS GDY + IPS PA + SV G Sbjct: 17 ANALEVVSPAAGISVIADRTYTVEWTGT-SDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTSS-GYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSD-TPAGMYSVRVG 227
BLAST of mRNA_P-fluviatile_contig105.955.1 vs. uniprot
Match: D8LPI2_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI2_ECTSI) HSP 1 Score: 176 bits (447), Expect = 3.130e-51 Identity = 99/202 (49.01%), Postives = 129/202 (63.86%), Query Frame = 1 Query: 16 ALDLISPADNLTIVSGRTFTVEWV----GSGTNTEFAIYLFHGNSFS-HEAGCGVFVASLCPQGGS-CLDETGDYDVVLPHPLPNVSEDGYAIGVRGGYDTEYGCSSSFRLITEEDIP-DTNEYSLNVTAPVDGDVAIIDEQYTVEWDYLNGVGSSSDRFDIDLYSATGKSGQCGTYEEALCFKSMIGCRDSSGDYLITIPS 600 +L + +P ++L +VSGRTFTV W GS T FAI L+ S+S E CG + +LCP G S CLD TGDYDVVLP P P++S+ Y IGV G D +GCS F LITE P D+++Y L VTAP DGDVA+ Y V++D+ NGVGSS+D FDIDL+++ CGTY LC + C+DS G + I+IP+ Sbjct: 31 SLTVTTPEEDLVVVSGRTFTVRWNQDDDGSTTPGRFAIDLYQYQSYSMDEDSCGTWATALCPYGESGCLDSTGDYDVVLPEPAPDLSDSAYRIGVLGVEDGSFGCSDKFFLITEGAAPTDSDKYFLEVTAPADGDVAVTGHAYDVQFDFENGVGSSADVFDIDLFTS-----DCGTYVAGLCEQ----CKDSGGSHSISIPT 223
BLAST of mRNA_P-fluviatile_contig105.955.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 174 bits (442), Expect = 8.920e-51 Identity = 93/202 (46.04%), Postives = 124/202 (61.39%), Query Frame = 1 Query: 10 SEALDLISPADNLTIVSGRTFTVEWVGSGTNTEFAIYLFHGNSFSHEAGCGVFVASLCPQGGS-CLDETGDYDVVLPHPLPNVSEDGYAIGVRGGYDTE-YGCSSSFRLITEEDIPDTNE---YSLNVTAPVDGDVAIIDEQYTVEWDYLNGVGSSSDRFDIDLYSATGKSGQCGTYEEALCFKSMIGCRDSSGDYLITIPS 600 + AL++++P+ +L +V+ RT+TVEW G+ + F I L+H S E CG +V +LCP G C D GDYD+V+P P+ S GY + V D + CS +F L+ ED PD Y L VT+P +GD A E+YTVE+DY NGVGS DRF IDLY A G G CGTY ++C K IGC+DS GDY + IP+ Sbjct: 17 ANALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADG-DGDCGTYVTSICDKPSIGCKDSMGDYDVEIPA 216
BLAST of mRNA_P-fluviatile_contig105.955.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 170 bits (430), Expect = 6.020e-49 Identity = 92/201 (45.77%), Postives = 122/201 (60.70%), Query Frame = 1 Query: 10 SEALDLISPADNLTIVSGRTFTVEWVGSGTNTEFAIYLFHGNSFSHEAGCGVFVASLCPQG-GSCLDETGDYDVVLPHPLPNVSEDGYAIGVRGGYDTEYG-CSSSFRLITEEDIPDTNEYS---LNVTAPVDGDVAIIDEQYTVEWDYLNGVGSSSDRFDIDLYSATGKSGQCGTYEEALCFKSMIGCRDSSGDYLITIP 597 + AL++++PA +VS R +TVEW G+G+N F I L++ NS E CG +V +LCP G C D GDYD+V+P P+ S GY + V D + CS F L+ D P ++ + VT+P GD A E+YTVE+DY NG+GSS RF IDLY+ATG SG CGT+ LC K IGC+DS GDY + IP Sbjct: 18 ASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATG-SGDCGTFMYTLCDKPTIGCKDSMGDYDVEIP 217
BLAST of mRNA_P-fluviatile_contig105.955.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 169 bits (429), Expect = 1.100e-48 Identity = 90/201 (44.78%), Postives = 124/201 (61.69%), Query Frame = 1 Query: 10 SEALDLISPADNLTIVSGRTFTVEWVGSGTNTEFAIYLFHGNSFSHEAGCGVFVASLCPQG-GSCLDETGDYDVVLPHPLPNVSEDGYAIGVRGGYDTEYG-CSSSFRLITEEDIP---DTNEYSLNVTAPVDGDVAIIDEQYTVEWDYLNGVGSSSDRFDIDLYSATGKSGQCGTYEEALCFKSMIGCRDSSGDYLITIP 597 + AL + +P+ LT+++ RT+TVEW G+ ++ F I L++ S E CG +V +LCP G C D GDYD+V+P P+ S GY + V +D E CS F L+ + P D + +L VT+P GD+A +YTVE+DY NGVGSS DRF IDLY A G+ G CGTY +++C K IGC+DS GDY + IP Sbjct: 17 ANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGE-GDCGTYVQSICDKPTIGCKDSMGDYDVEIP 216
BLAST of mRNA_P-fluviatile_contig105.955.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 169 bits (429), Expect = 1.370e-48 Identity = 90/201 (44.78%), Postives = 122/201 (60.70%), Query Frame = 1 Query: 10 SEALDLISPADNLTIVSGRTFTVEWVGSGTNTEFAIYLFHGNSFSHEAGCGVFVASLCPQG-GSCLDETGDYDVVLPHPLPNVSEDGYAIGVRGGYDTEYG-CSSSFRLITEEDIPDTNEYS---LNVTAPVDGDVAIIDEQYTVEWDYLNGVGSSSDRFDIDLYSATGKSGQCGTYEEALCFKSMIGCRDSSGDYLITIP 597 + AL++++PA+ +V+ R +TVEW G+G+N + I L++ S E CG +V +LCP G C D GDYD+V+P P+ S GY + V D + G CS F L+ + P + + VT+P GD A E+YTVE+DY NG+GSS RF IDLYSATG SG CGT+ LC K IGC+DS GDY + IP Sbjct: 5 ASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATG-SGDCGTFMYTLCDKPTIGCKDSMGDYDVEIP 204
BLAST of mRNA_P-fluviatile_contig105.955.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 167 bits (422), Expect = 8.090e-48 Identity = 92/201 (45.77%), Postives = 125/201 (62.19%), Query Frame = 1 Query: 10 SEALDLISPADNLTIVSGRTFTVEWVGSGTNTEFAIYLFHGNSFSHEAGCGVFVASLCPQGGS-CLDETGDYDVVLPHPLPNVSEDGYAIGVRGGYD-TEYGCSSSFRLITEEDIPDTNEYS--LNVTAPVDGDVAIIDEQYTVEWDYLNGVGSSSDRFDIDLYSATGKSGQCGTYEEALCFKSMIGCRDSSGDYLITIPS 600 + AL+++SPA +V+ +TVEW G+ T+ + I L++ S E CG +V +LCP G C D GDYDVV+P P+ S GY + V D ++YGCS F LI + PD + ++VT+P DGD A+ +YTVE+DY NG+GSS +RF IDLYS+ G SG CGTY +C K IGC+DS GDY + IPS Sbjct: 17 ANALEVVSPAAGDMVVADSAYTVEWTGA-TSGRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSS-GYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGG-SGDCGTYVTTICDKPSIGCKDSQGDYDVVIPS 214
BLAST of mRNA_P-fluviatile_contig105.955.1 vs. uniprot
Match: Q8QKV3_ESV1K (EsV-1-163 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKV3_ESV1K) HSP 1 Score: 165 bits (417), Expect = 5.560e-47 Identity = 94/200 (47.00%), Postives = 125/200 (62.50%), Query Frame = 1 Query: 16 ALDLISPADNLTIVSGRTFTVEWV---GSGTNTEFAIYLFHGNSFS-HEAGCGVFVASLCPQGG-SCLDETGDYDVVLPHPLPNVSEDGYAIGVRGGYDTEYGCSSSFRLITEEDIP-DTNEYSLNVTAPVDGDVAIIDEQYTVEWDYLNGVGSSSDRFDIDLYSATGKSGQCGTYEEALCFKSMIGCRDSSGDYLITIP 597 +L + +P ++L +VSGRTFTV W GS T + FAI L+ S++ E CG +V +LCP G C D TGDYDVVLP P ++ + Y IGV G D +GCS F L TE+ D ++Y L+VTAP DGDVA+I + Y V++ Y NGVGSS+D FDIDL+++ CGTY LC + C+DS G + I IP Sbjct: 31 SLTVTTPEEDLVVVSGRTFTVRWNQDDGSTTYSRFAIDLYQYQSYAMDEDSCGSWVTALCPYGERGCPDSTGDYDVVLPEPATDLPDSTYRIGVLGVEDGSFGCSDKFTLTTEQATSKDPDKYFLSVTAPADGDVAVIGDTYEVQFSYENGVGSSADVFDIDLFTS-----DCGTYVAGLCDQ----CKDSGGSHPIIIP 221
BLAST of mRNA_P-fluviatile_contig105.955.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 159 bits (401), Expect = 8.950e-45 Identity = 85/193 (44.04%), Postives = 117/193 (60.62%), Query Frame = 1 Query: 10 SEALDLISPADNLTIVSGRTFTVEWVGSGTNTEFAIYLFHGNSFSHEAGCGVFVASLCPQG-GSCLDETGDYDVVLPHPLPNVSEDGYAIGVRGGYDTEYG-CSSSFRLITEEDIP---DTNEYSLNVTAPVDGDVAIIDEQYTVEWDYLNGVGSSSDRFDIDLYSATGKSGQCGTYEEALCFKSMIGCRDSS 573 + AL + +P+ LT+++ RT+TVEW G+ ++ F I L++ S E CG +V +LCP G C D GDYD+V+P P+ S GY + V +D E CS F LI + P D + +L VT+P GD+A +YTVE+DY NGVGS DRF IDLY A G G CGTY +++C K IGC+DS+ Sbjct: 18 ANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADG-DGDCGTYVQSICDKPTIGCKDSN 209 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig105.955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig105.955.1 >prot_P-fluviatile_contig105.955.1 ID=prot_P-fluviatile_contig105.955.1|Name=mRNA_P-fluviatile_contig105.955.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=229bp MFFSEALDLISPADNLTIVSGRTFTVEWVGSGTNTEFAIYLFHGNSFSHEback to top mRNA from alignment at P-fluviatile_contig105:12281..12969- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig105.955.1 ID=mRNA_P-fluviatile_contig105.955.1|Name=mRNA_P-fluviatile_contig105.955.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=689bp|location=Sequence derived from alignment at P-fluviatile_contig105:12281..12969- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig105:12281..12969- >mRNA_P-fluviatile_contig105.955.1 ID=mRNA_P-fluviatile_contig105.955.1|Name=mRNA_P-fluviatile_contig105.955.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1374bp|location=Sequence derived from alignment at P-fluviatile_contig105:12281..12969- (Porterinema fluviatile SAG_2381)back to top |