mRNA_P-fluviatile_contig105.954.1 (mRNA) Porterinema fluviatile SAG_2381
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig105.954.1 vs. uniprot
Match: D8LP55_ECTSI (EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP55_ECTSI) HSP 1 Score: 103 bits (256), Expect = 4.770e-26 Identity = 48/74 (64.86%), Postives = 57/74 (77.03%), Query Frame = 1 Query: 1 LRPAVRKHLTPTEKQHILMRQGSRCNNCGDRIRLHPYANCDADHIVGVGRGGRTTLENMKLLCVQDHRAKSVRE 222
LRP RKHLT +K IL RQ SRCN+CGDRIR++PYA+CDADHI+GV RGG+T ENM LLC+ HR K+ E
Sbjct: 26 LRPVARKHLTRPQKWAILERQRSRCNSCGDRIRIYPYADCDADHIIGVCRGGKTVPENMNLLCLPCHRRKTCLE 99
BLAST of mRNA_P-fluviatile_contig105.954.1 vs. uniprot
Match: D7G322_ECTSI (EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G322_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 9.110e-25 Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 1 Query: 1 LRPAVRKHLTPTEKQHILMRQGSRCNNCGDRIRLHPYANCDADHIVGVGRGGRTTLENMKLLCVQDHRAKSVRE 222
LRP RKHLT ++KQ +L Q SRCN+CGD I L PYANCDADH++GV RGG T EN ++LCV+ HR K+ E
Sbjct: 26 LRPRARKHLTRSQKQAVLQTQRSRCNSCGDLIHLQPYANCDADHVIGVCRGGETVEENTQMLCVRCHRQKTCLE 99
BLAST of mRNA_P-fluviatile_contig105.954.1 vs. uniprot
Match: Q8QNP5_ESV1K (EsV-1-16 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP5_ESV1K) HSP 1 Score: 96.3 bits (238), Expect = 2.450e-23 Identity = 46/74 (62.16%), Postives = 54/74 (72.97%), Query Frame = 1 Query: 1 LRPAVRKHLTPTEKQHILMRQGSRCNNCGDRIRLHPYANCDADHIVGVGRGGRTTLENMKLLCVQDHRAKSVRE 222
LRP RKHLT +K IL RQ SRCN+ GDRI ++PYANCDADHI+ V RGG+T ENM LLC+ HR K+ E
Sbjct: 26 LRPVARKHLTRPQKWAILERQRSRCNSYGDRIHIYPYANCDADHIISVCRGGKTLPENMNLLCLPCHRRKTCLE 99
BLAST of mRNA_P-fluviatile_contig105.954.1 vs. uniprot
Match: A0A534LZK0_9EURY (DUF262 domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A534LZK0_9EURY) HSP 1 Score: 48.9 bits (115), Expect = 7.000e-5 Identity = 25/57 (43.86%), Postives = 33/57 (57.89%), Query Frame = 1 Query: 40 KQHILMRQGSRCNNCGDRIRLHPYANCDADHIVGVGRGGRTTLENMKLLCVQDHRAK 210
K + R +C CG +IR+ +ADH+ RGG TTLEN KLLCV +R+K
Sbjct: 374 KLALYRRANGKCEVCGTQIRVDQ---AEADHVFAWSRGGPTTLENAKLLCVSCNRSK 427 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig105.954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig105.954.1 >prot_P-fluviatile_contig105.954.1 ID=prot_P-fluviatile_contig105.954.1|Name=mRNA_P-fluviatile_contig105.954.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=74bp LRPAVRKHLTPTEKQHILMRQGSRCNNCGDRIRLHPYANCDADHIVGVGRback to top mRNA from alignment at P-fluviatile_contig105:11748..11969+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig105.954.1 ID=mRNA_P-fluviatile_contig105.954.1|Name=mRNA_P-fluviatile_contig105.954.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=222bp|location=Sequence derived from alignment at P-fluviatile_contig105:11748..11969+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig105:11748..11969+ >mRNA_P-fluviatile_contig105.954.1 ID=mRNA_P-fluviatile_contig105.954.1|Name=mRNA_P-fluviatile_contig105.954.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=444bp|location=Sequence derived from alignment at P-fluviatile_contig105:11748..11969+ (Porterinema fluviatile SAG_2381)back to top |