mRNA_P-fluviatile_contig103.950.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig103.950.1
Unique Name	mRNA_P-fluviatile_contig103.950.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

[Close]

BLAST of mRNA_P-fluviatile_contig103.950.1 vs. uniprot
Match: A0A6H5JTF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTF6_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.510e-15
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = -1

Query:  250 QVEIADRFGCSERFVIINNIRTVKADRKKVEAAAAAGSGTQKTARRGDFPE 402
            QV+IADRFGCSERFV     RTVKADRKKVEAA AAG GTQKTAR+GDFPE
Sbjct:  109 QVQIADRFGCSERFV-----RTVKADRKKVEAATAAGGGTQKTARKGDFPE 154

[Close]

BLAST of mRNA_P-fluviatile_contig103.950.1 vs. uniprot
Match: A0A6H5K1E5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1E5_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 8.590e-15
Identity = 49/79 (62.03%), Postives = 55/79 (69.62%), Query Frame = -1

Query:  250 ARRGVIVRARTTTRSLRCSSCWMRRS*EQVEIADRFGCSERFVIINNIRTVKADRKKVEAAAAAGSGTQKTARRGDFPE 486
            ARRGV VRARTTTRSLR SSCWMRRS   +E   +     R  ++     +KADRKKVEAA AA  G QKTAR+GDFPE
Sbjct:   63 ARRGVFVRARTTTRSLRFSSCWMRRS---LEYRLQTASGARSGLLG----LKADRKKVEAATAAVGGIQKTARKGDFPE 134

[Close]

BLAST of mRNA_P-fluviatile_contig103.950.1 vs. uniprot
Match: A0A6H5JUX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX0_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.100e-13
Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = -1

Query:  250 QVEIADRFGCSERFVIINNIRTVKADRKKVEAAAAAGSGTQKTARRGDFPE 402
            QV+IADRFGCSERFV     RT KADRKKVEAA  AG GTQKTAR+GDFPE
Sbjct:  109 QVQIADRFGCSERFV-----RTGKADRKKVEAATPAGGGTQKTARKGDFPE 154

[Close]

BLAST of mRNA_P-fluviatile_contig103.950.1 vs. uniprot
Match: A0A6H5JCH9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH9_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.580e-12
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = -1

Query:  250 QVEIADRFGCSERFVIINNIRTVKADRKKVEAAAAAGSGTQKTARRGDFPE 402
            QV+ A+RFGCSERF      RTVKADRKKVEAA AAG GTQKTAR+GDFPE
Sbjct:  109 QVQNAERFGCSERFG-----RTVKADRKKVEAATAAGGGTQKTARKGDFPE 154

[Close]

BLAST of mRNA_P-fluviatile_contig103.950.1 vs. uniprot
Match: A0A6H5JZN2_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN2_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.010e-11
Identity = 38/51 (74.51%), Postives = 40/51 (78.43%), Query Frame = -1

Query:  250 QVEIADRFGCSERFVIINNIRTVKADRKKVEAAAAAGSGTQKTARRGDFPE 402
            QV+IADRFGCSER        TVKADRKKVEAA  AG GTQKTAR+GDFPE
Sbjct:  907 QVQIADRFGCSER--------TVKADRKKVEAATVAGGGTQKTARKGDFPE 949

[Close]

BLAST of mRNA_P-fluviatile_contig103.950.1 vs. uniprot
Match: A0A6H5JWL9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWL9_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.900e-8
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = -1

Query:  250 VEIADRFGCSERFVIINNIRTVKADRKKVEAAAAAGSGTQKTARRGDFPE 399
            V++ADRF CS RF     + TV++DRK +EAAAAAG+G QK AR+GDFPE
Sbjct:   50 VQVADRFSCSVRF-----LATVRSDRKAIEAAAAAGNGCQKNARKGDFPE 94

[Close]

BLAST of mRNA_P-fluviatile_contig103.950.1 vs. uniprot
Match: A0A6H5LPY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPY8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 5.200e-8
Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = -1

Query:  250 EIADRFGCSERFVIINNIRTVKADRKKVEAAAAAGSGTQKTARRGDFPE 396
            +IADRF CS RF++     T+K+DRKK+EAAAAAG+G+QKTAR+ +F E
Sbjct:  116 QIADRFKCSVRFLV-----TLKSDRKKIEAAAAAGAGSQKTARKAEFQE 159

[Close]

BLAST of mRNA_P-fluviatile_contig103.950.1 vs. uniprot
Match: A0A6H5K9P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9P6_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.260e-7
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = -1

Query:  250 EIADRFGCSERFVIINNIRTVKADRKKVEAAAAAGSGTQKTARRGDFPE 396
            +IADRF CS RF     + TVK+DRKK+EAAAAAG+G+QKTAR+ +F E
Sbjct:   95 QIADRFKCSVRF-----LATVKSDRKKIEAAAAAGAGSQKTARKAEFQE 138

[Close]

BLAST of mRNA_P-fluviatile_contig103.950.1 vs. uniprot
Match: A0A6H5JQU7_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU7_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 7.380e-7
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = -1

Query:  250 EIADRFGCSERFVIINNIRTVKADRKKVEAAAAAGSGTQKTARRGDFPE 396
            +IADRF CS RF     I TVKA R+KVE A AAG G+QK AR+GDFPE
Sbjct:  112 QIADRFTCSLRF-----IGTVKAGRQKVEIATAAGCGSQKAARKGDFPE 155

[Close]

BLAST of mRNA_P-fluviatile_contig103.950.1 vs. uniprot
Match: A0A6H5K1S6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S6_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.380e-6
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = -1

Query:  250 EIADRFGCSERFVIINNIRTVKADRKKVEAAAAAGSGTQKTARRGDFPE 396
            +IADRF CS RF     I TVKA R+KVE A AAG G+QKTAR+ DFPE
Sbjct:   64 QIADRFKCSLRF-----IGTVKAGRQKVETATAAGCGSQKTARKEDFPE 107

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig103.950.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig103.950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5JTF6_9PHAE	1.510e-15	82.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K1E5_9PHAE	8.590e-15	62.03	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5JUX0_9PHAE	3.100e-13	78.43	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JCH9_9PHAE	3.580e-12	76.47	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5JZN2_9PHAE	2.010e-11	74.51	Helicase ATP-binding domain-containing protein n=1...	[more]
A0A6H5JWL9_9PHAE	1.900e-8	62.00	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5LPY8_9PHAE	5.200e-8	61.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K9P6_9PHAE	1.260e-7	63.27	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JQU7_9PHAE	7.380e-7	65.31	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5K1S6_9PHAE	1.380e-6	65.31	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]

Pages

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig103:27369..27938+
coding sequence from alignment at P-fluviatile_contig103:27369..27938+

protein sequence of mRNA_P-fluviatile_contig103.950.1

>prot_P-fluviatile_contig103.950.1 ID=prot_P-fluviatile_contig103.950.1|Name=mRNA_P-fluviatile_contig103.950.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=144bp
TLKKNEKEKTQKGRQTSTADPCHTERKGGRKRTYIHIYVRRPRETNNERR
RGGGKNKDEKKGKRTADQGRNNFGIKKAGKTKLLRKVSPARGFLGAAACS
SRSLHLLPVSLYRPNIIYYNKPLRAPEAVCNLYLLSRSSHPAA*

mRNA from alignment at P-fluviatile_contig103:27369..27938+

Legend: CDSpolypeptideUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig103.950.1 ID=mRNA_P-fluviatile_contig103.950.1|Name=mRNA_P-fluviatile_contig103.950.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=570bp|location=Sequence derived from alignment at P-fluviatile_contig103:27369..27938+ (Porterinema fluviatile SAG_2381)
ACATTAAAAAAAAACGAAAAGGAAAAGACGCAAAAAGGGAGACAGACATC
AACAGCGGACCCTTGCCACACAGAAAGGAAAGGAGGACGAAAGCGGACAT
ACATACATATATATGTGAGAAGACCGAGAGAGACAAACAATGAACGACGA
AGAGGGGGGGGAAAAAACAAGGACGAAAAAAAAGGCAAGCGAACGGCGGA
CCAGGGTCGGAACAACTTTGgaATAAAAAAGGCGGGGAAAACAAAGCTCC
TCCGGAAAGTCTCCCCTGCGCGCGGTTTTCTGGGTGCCGCTGCCTGCAGC
AGCCGCAGCCTCCACCTTCTTCCGGTCAGCCTTTACCGTCCTAATATTAT
TTATTATAACAAACCGCTCCGAGCACCCGAAGCGGTCTGCAATCTCTACT
TGCTCTCAAGATCTTCGCATCCAGCAGCTTGAGCATCTCAAGCTTCTTGT
TGTTGTCCGGGCGCGCACGATAACCCCCCTTCTTGCTAATCGATAATTCG
GGTGGCCCAGTTCTGTATGTCGGGAGTGTAAGGCAGCTGGGCTGCGACGG
GCCGTGGTAGGGGAGGGGCG

Coding sequence (CDS) from alignment at P-fluviatile_contig103:27369..27938+

>mRNA_P-fluviatile_contig103.950.1 ID=mRNA_P-fluviatile_contig103.950.1|Name=mRNA_P-fluviatile_contig103.950.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=864bp|location=Sequence derived from alignment at P-fluviatile_contig103:27369..27938+ (Porterinema fluviatile SAG_2381)
ACATTAAAAAAAAACGAAAAGGAAAAGACGCAAAAAGGGAGACAGACATC
AACAGCGGACCCTTGCCACACAGAAAGGAAAGGAGGACGAAAGCGGACAT
ACATACATATATATGTGAGAAGACCGAGAGAGACAAACAATGAACGACGA
AGAGGGGGGGGAAAAAACAAGGACGAAAAAAAAGGCAAGCGAACGGCGGA
CCAGGGTCGGAACAACTTTGgaATAAAAAAGGCGGGGAAAACAAAGCTCC
TCCGGAAAGTCTCCCCTGCGCGCGGTTTTCTGGGTGCCGCTGCCTGCAGC
AGCCGCAGCCTCCACCTTCTTCCGGTCAGCCTTTACCGTCCTAATATTAT
TTATTATAACAAACCGCTCCGAGCACCCGAAGCGGTCTGCAATCTCTACT
TGCTCTCAAGATCTTCGCATCCAGCAGCTTGAACATTAAAAAAAAACGAA
AAGGAAAAGACGCAAAAAGGGAGACAGACATCAACAGCGGACCCTTGCCA
CACAGAAAGGAAAGGAGGACGAAAGCGGACATACATACATATATATGTGA
GAAGACCGAGAGAGACAAACAATGAACGACGAAGAGGGGGGGGAAAAAAC
AAGGACGAAAAAAAAGGCAAGCGAACGGCGGACCAGGGTCGGAACAACTT
TGgaATAAAAAAGGCGGGGAAAACAAAGCTCCTCCGGAAAGTCTCCCCTG
CGCGCGGTTTTCTGGGTGCCGCTGCCTGCAGCAGCCGCAGCCTCCACCTT
CTTCCGGTCAGCCTTTACCGTCCTAATATTATTTATTATAACAAACCGCT
CCGAGCACCCGAAGCGGTCTGCAATCTCTACTTGCTCTCAAGATCTTCGC
ATCCAGCAGCTTGA