Homology
BLAST of mRNA_P-fluviatile_contig100.934.1 vs. uniprot
Match: A0A6H5KXB0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXB0_9PHAE) HSP 1 Score: 49.7 bits (117), Expect = 7.620e-5 Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = -2 Query: 261 HAEAVEFCRLHPSSMEGTQDR 323
HAEAVEFCRLHPSSMEGTQDR
Sbjct: 120 HAEAVEFCRLHPSSMEGTQDR 140
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 325 |
| Cds size | 324 |
| Stop | 1 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815421.1896143-CDS-P-fluviatile_contig100:19822..20146 | 1622815421.1896143-CDS-P-fluviatile_contig100:19822..20146 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig100 19823..20146 + |
| 1693561797.4283712-CDS-P-fluviatile_contig100:19822..20146 | 1693561797.4283712-CDS-P-fluviatile_contig100:19822..20146 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig100 19823..20146 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig100.934.1 >prot_P-fluviatile_contig100.934.1 ID=prot_P-fluviatile_contig100.934.1|Name=mRNA_P-fluviatile_contig100.934.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=108bp
LLNGDQHKRAHTTLKCTRVFSTRARGPQPCGYNPLAFPLRPVSRPVPADM
VLYTSGPSPGLVFPPCCCGLSPDPSQQTWCCIPPDHPRSCVPSMLLGCRR
QNSTASA* back to topmRNA from alignment at P-fluviatile_contig100:19823..20146+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig100.934.1 ID=mRNA_P-fluviatile_contig100.934.1|Name=mRNA_P-fluviatile_contig100.934.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=324bp|location=Sequence derived from alignment at P-fluviatile_contig100:19823..20146+ (Porterinema fluviatile SAG_2381)
CTCCTTAACGGGGATCAACACAAGAGAGCACACACTACTCTCAAGTGTAC
ACGAGTGTTCTCAACTCGTGCTCGCGGGCCACAACCTTGCGGGTACAACC
CGCTGGCATTCCCGCTCCGGCCTGTCTCCAGACCCGTCCCAGCAGACATG
GTGTTGTATACCTCCGGGCCATCTCCCGGTCTTGTGTTCCCTCCATGCTG
TTGTGGCCTGTCTCCAGACCCGTCCCAGCAGACATGGTGTTGTATACCTC
CGGACCATCCCCGGTCTTGTGTTCCTTCCATGCTGCTGGGGTGCAGGCGG
CAAAATTCCACCGCCTCCGCGTGA back to topCoding sequence (CDS) from alignment at P-fluviatile_contig100:19823..20146+ >mRNA_P-fluviatile_contig100.934.1 ID=mRNA_P-fluviatile_contig100.934.1|Name=mRNA_P-fluviatile_contig100.934.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=648bp|location=Sequence derived from alignment at P-fluviatile_contig100:19823..20146+ (Porterinema fluviatile SAG_2381)
CTCCTTAACGGGGATCAACACAAGAGAGCACACACTACTCTCAAGTGTAC
ACGAGTGTTCTCAACTCGTGCTCGCGGGCCACAACCTTGCGGGTACAACC
CGCTGGCATTCCCGCTCCGGCCTGTCTCCAGACCCGTCCCAGCAGACATG
GTGTTGTATACCTCCGGGCCATCTCCCGGTCTTGTGTTCCCTCCATGCTG
TTGTGGCCTGTCTCCAGACCCGTCCCAGCAGACATGGTGTTGTATACCTC
CGGACCATCCCCGGTCTTGTGTTCCTTCCATGCTGCTGGGGTGCAGGCGG
CAAAATTCCACCGCCTCCGCGTGACTCCTTAACGGGGATCAACACAAGAG
AGCACACACTACTCTCAAGTGTACACGAGTGTTCTCAACTCGTGCTCGCG
GGCCACAACCTTGCGGGTACAACCCGCTGGCATTCCCGCTCCGGCCTGTC
TCCAGACCCGTCCCAGCAGACATGGTGTTGTATACCTCCGGGCCATCTCC
CGGTCTTGTGTTCCCTCCATGCTGTTGTGGCCTGTCTCCAGACCCGTCCC
AGCAGACATGGTGTTGTATACCTCCGGACCATCCCCGGTCTTGTGTTCCT
TCCATGCTGCTGGGGTGCAGGCGGCAAAATTCCACCGCCTCCGCGTGA back to top
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