mRNA_P-fluviatile_contig10.932.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.932.1
Unique NamemRNA_P-fluviatile_contig10.932.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:3802165..3804916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.9278355-CDS-P-fluviatile_contig10:3802164..38022471622815359.9278355-CDS-P-fluviatile_contig10:3802164..3802247Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3802165..3802247 +
1693561604.2023654-CDS-P-fluviatile_contig10:3802164..38022471693561604.2023654-CDS-P-fluviatile_contig10:3802164..3802247Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3802165..3802247 +
1622815359.938067-CDS-P-fluviatile_contig10:3804801..38049161622815359.938067-CDS-P-fluviatile_contig10:3804801..3804916Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3804802..3804916 +
1693561604.2111328-CDS-P-fluviatile_contig10:3804801..38049161693561604.2111328-CDS-P-fluviatile_contig10:3804801..3804916Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3804802..3804916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.932.1prot_P-fluviatile_contig10.932.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 3802165..3804916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.932.1

>prot_P-fluviatile_contig10.932.1 ID=prot_P-fluviatile_contig10.932.1|Name=mRNA_P-fluviatile_contig10.932.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=66bp
PRWRCPEGGAEELSCDGTATLRAPWSWRSGSGSVVATVSTADTGAAAGTA
PTIAASTLAVVVAPGE
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mRNA from alignment at P-fluviatile_contig10:3802165..3804916+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.932.1 ID=mRNA_P-fluviatile_contig10.932.1|Name=mRNA_P-fluviatile_contig10.932.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2752bp|location=Sequence derived from alignment at P-fluviatile_contig10:3802165..3804916+ (Porterinema fluviatile SAG_2381)
CCGAGGTGGAGGTGCCCGGAGGGAGGCGCAGAGGAGCTCAGCTGCGATGG
GACAGCGACACTACGTGCGCCATGGTCGTGGAGGTGCGTGATGATGTTTT
ATTCTCGCGTGGATCGCGAGCGGGATTCGACCGTTAGGTTGTGCACAAAC
CTCTTCGAAATCTCACTCAAATTTGAAAATCCACAACTTGGTTCAGTGCT
ACAAAAGCGTCTGCCACCGGACACTTTCGTAAGGCTGATGCGTCCCACCA
CAAAATAATAAGGGAAAATGACACAACTAGGAACACCCAGGCCGAACCAC
GACACAGCTGGGTACCCCTTCCACACACACATTACGCGCTCACAGCTGAT
TGGCCAGCGCCACAACTTACCAGGTTCTGGCGTGTTTTCCGCTGGCCGCT
GGGTATACCCCGCTGCGTCGTTCTTTGTCCCAAATTGTACCCTGCTGCTC
CCGACCTGTACCCTGATAAGACGCAAAATTGACCCGCAGGAAAACTCTTC
TGCCCGCTGTACGGCACATCAATCCACGCCCAACAACACCCCGCTTTTGA
TGTCACACACCCACCAACATCGGATATCCACACGGGATAACCATGGCGTA
ACAAACCACACAGAGCCAGAAAAAACACCCCCCGTGCGTCGCACAGCAAA
CAGCCCGGCAGCAGCAATCTTGCAGCCGGTAGCCAGCAAACAGCCAGCAA
AACACCCCGCGTGCGCGCACAGCCACAGAACGCAGCATACAGGTCATCAA
ACAAGGCCAACGCGCCAGCGACCAGCCGGTCTCATGGCCTCACGCCGAAC
CTTCCTCTCTCCACACACACACACCACACACTCCGGCACACTCCGGCACC
AAAAAACAAGCGGCGGCGCTTATGGCTACAACCGCTTTTCCCACTTTTGT
TTCAAAAACTCAGAAAAGGCCCGCGTGCTATTAGATTAGGGTATGTATGT
ACATTGTAGCATTCGGATGATGATGAACGAGCGCGGCGGACGTGCCGTCC
ATTCCGTCGGTTGAACCATGATGGGAGAGACCACCGTAGCAGTAGTACAA
CAAGTACAAGTACAGCGGCAGCAGCACGTGCTAACTTTCTGCGCGTTCTC
GATAGAAAATTGTCGGTACAATATATACGCGTTTGGCGCCGAGTACTAGT
CATACTATAGTAGATATGCAGTGGCTCATGTGTAAATATACTTTGAAGTA
GTAGTATTTCGGCTAGTATTCAAAGGCTACATTCGTGGGGTGAGAAAAAA
GGGACGAAGTTGTAGGGAGTTTCTGTCTCGGTCCTTCTGTCTTTGGTACT
TTGATTTCCTTCCTTCGGGGTGAAGTCATCATGGGCAAGGAGGGCACTAC
GTAAAGGCCACCAGCAAAACTGCTGCACTACGTAAAGGCCACCAGCATAA
CTGCTGTAGCAAAGAAAGGCTTTTGTAATTTATGTGCAGCACATGAGAGC
ACGTCTTCCGCGAGTTACGAACGAATTGGTCAGTTGGATGCTCTTCAAAC
CTCAGCACGCAGGAAGAAGGGGGAAAGTGCGTGGAAACTAAGGCGAACAT
GTTGGCCACGCACTTCAAAAGTATCGGCTGCTTTTTTCCGGCGTCGGAAG
AGAGGAAAAAGTGCCACCAAGATGCAACACACTTTATGAAATGTGCAGCC
GCCCTCCCACTTCCCCCCAGGTGTAGGTACGCTCGGCCTGCTGTTGGCGC
GAAAACAACGCGACCCAACCGAACGCCACACACCGGGGCACCGGCCCGCT
ACTTGTCGTCAACGAAAGAGACAACGAAATAGACGTACAACCTCCGAATC
CTTTCCGCGTGCAAAAAGACGCTGTAAAGCGCTGCTcCCTTACCCGAGCC
CAACTACAGAATGCCTTACTCGATGGGGTTGCATGGGTTGCATGTCATAC
GAATATTCTCTTGTGTATCAGAAACATAGAGACCGAACGCCGCAGAGCAC
CGCCCCCTCCGCGGACGGACCTAGAGTAGCGCCTCAAGACTTGGTCTGTC
TGGCGCGCGACAGAACGGGACACGGCGTTGGTGGTGCTTGCCTACTTCTT
AGCCTCCGTATCCTTCCCGCGTCAAAAAAGACGCTGCTGTACCCGACCCG
AACGGCAACGACCAATACAACGGGGTTGCGTGTCATACGCATATATTCCG
GTGTATCAGAAACAGGAAATTTGAGACCGTACGCTGCACGGCGCTGCCCC
CGCCCCCCCACCTTACCCACGTAGGATGGCGCCGCAAATTTGTGTCTATC
TGCTCTCCAAAAGCAAAAAAAAGCGGGACACAACGCCACGCAACTCGACT
AAAAGCAACACAGAATCGCACCCCCGCCGTCCCCGCCACTCACATTTTCA
AACTATTGTACGGGCACGTCCTACAACGGCAGGAAGGGGGGCAAAGAATG
TGGCACACACAAAAAAAAACTTTACTTAGTCGGCCGTCAGGTCGACAGAG
CCTTGGGACAAGTTCTGCCCGCCGCTTGGCGCAGATGCAGAGCCGCTACC
GGGTGTCTCTTGACACGAGTAGCGCTGAGCCGCAAGCCCCCCCCACACCC
TCGGCGCGGGTGCCCCGTCGCCTGTAGGAGCTCCGACACCGAGATGCCCC
ACTTGACTCCGGACGCTGCCCATCCCGTGGCGCGCAGGAGCGGGAGCGGG
AGCGTCGTGGCTACCGTCTCCACTGCCGACACCGGCGCCGCTGCCGGCAC
TGCCCCCACCATCGCCGCGTCCACGCTGGCAGTTGTCGTTGCGCCCGGGG
AA
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Coding sequence (CDS) from alignment at P-fluviatile_contig10:3802165..3804916+

>mRNA_P-fluviatile_contig10.932.1 ID=mRNA_P-fluviatile_contig10.932.1|Name=mRNA_P-fluviatile_contig10.932.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=396bp|location=Sequence derived from alignment at P-fluviatile_contig10:3802165..3804916+ (Porterinema fluviatile SAG_2381)
CCGAGGTGGAGGTGCCCGGAGGGAGGCGCAGAGGAGCTCAGCTGCGATGG
GACAGCGACACTACGTGCGCCATGGTCGTGGAGCCGAGGTGGAGGTGCCC
GGAGGGAGGCGCAGAGGAGCTCAGCTGCGATGGGACAGCGACACTACGTG
CGCCATGGTCGTGGAGGAGCGGGAGCGGGAGCGTCGTGGCTACCGTCTCC
ACTGCCGACACCGGCGCCGCTGCCGGCACTGCCCCCACCATCGCCGCGTC
CACGCTGGCAGTTGTCGTTGCGCCCGGGGAAGAGCGGGAGCGGGAGCGTC
GTGGCTACCGTCTCCACTGCCGACACCGGCGCCGCTGCCGGCACTGCCCC
CACCATCGCCGCGTCCACGCTGGCAGTTGTCGTTGCGCCCGGGGAA
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