mRNA_P-fluviatile_contig10.919.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.919.1
Unique NamemRNA_P-fluviatile_contig10.919.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig10.919.1 vs. uniprot
Match: A0A6H5KMH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMH9_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.210e-20
Identity = 125/465 (26.88%), Postives = 167/465 (35.91%), Query Frame = 2 
Query:  440 MGVLCIAVHADP-ERRRMVIITGGDDQAISVAEVELL---------HHPKKAADKSPSQGEEQRGTS---IHSKKRHFSARLLGGAPEVTDRAAGSAIKGISVFPVEHPA--------PPSESEERQTSGGSHVSTIVGENSAAGSSTPRS------------------------PIALSVFTVSRDQRLSRWDLVEAETSPPALTFDKTGFGTRADVHQASDFSVRGHTDGAGIPRSLGLYRGGRIFGSVTAAPSGGRPTAPASRRDTGDALLRR---------------------------------------------TARHGDMKQRCARWCLRWRAGCVTDVADVSGLDTI-LLPGDPKQWCHV--------------------------GDKPNACGHGANV---------EEGATQERLCD---RSAPE-----EPLASPAALVAVSGQGLQLIVFGA 1432
            MGVLC+AVH    E  R+VI+TGGDDQAI VAE+E++            + A+D+ PS  +  RG     + +++R  + RL+ G+P+V + AAGSAIKG+ + PV+ P+        P   +E   T      S  + ++ AA +  P S                        P +LS+FTV+RDQRLSRWDLV+  +                                                                                                                          +R G       RW LRWRAGCVTDV DVSGLD   L P +P+   H                           GD+ ++  H             E G T E  C     S  E     E   +PAA+VAVSGQGLQL+VFGA
Sbjct:    1 MGVLCMAVHVPAGEAGRVVIVTGGDDQAICVAELEVVVVLDDGRCSPTTRIASDRGPSSSQGSRGQGGGEVPARERRSAVRLVAGSPQVFEGAAGSAIKGMQLLPVDPPSXXXXPFRLPGPSTESPTTMQSPTPSAGIHDDDAAVAPPPSSRSANFSFSSTTPAVEPGVGAGAGPPCSLSLFTVARDQRLSRWDLVKDSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASRQGQKGAAERRWRLRWRAGCVTDVCDVSGLDVAPLSPREPQHRQHAAGEATLGGRSXXXXXXXXXXXXXXXSGDRASSPCHRHRTVARLLRKEGEGGETAENACGGVPSSEAEDWTRGEAFGAPAAIVAVSGQGLQLVVFGA 465
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KMH9_9PHAE3.210e-2026.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:3605860..3607739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-03_003160.1
Hectar predicted targeting categoryother localisation
Exons2
Model size1628
Cds size996
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.919.1prot_P-fluviatile_contig10.919.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 3606053..3607300 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.8155541-UTR-P-fluviatile_contig10:3605859..36060521622815359.8155541-UTR-P-fluviatile_contig10:3605859..3606052Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 3605860..3606052 -
1693561604.1280427-UTR-P-fluviatile_contig10:3605859..36060521693561604.1280427-UTR-P-fluviatile_contig10:3605859..3606052Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 3605860..3606052 -
1622815359.8493893-UTR-P-fluviatile_contig10:3607300..36077391622815359.8493893-UTR-P-fluviatile_contig10:3607300..3607739Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 3607301..3607739 -
1693561604.158173-UTR-P-fluviatile_contig10:3607300..36077391693561604.158173-UTR-P-fluviatile_contig10:3607300..3607739Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 3607301..3607739 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.8260913-CDS-P-fluviatile_contig10:3606052..36068601622815359.8260913-CDS-P-fluviatile_contig10:3606052..3606860Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3606053..3606860 -
1693561604.138023-CDS-P-fluviatile_contig10:3606052..36068601693561604.138023-CDS-P-fluviatile_contig10:3606052..3606860Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3606053..3606860 -
1622815359.838067-CDS-P-fluviatile_contig10:3607112..36073001622815359.838067-CDS-P-fluviatile_contig10:3607112..3607300Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3607113..3607300 -
1693561604.1480505-CDS-P-fluviatile_contig10:3607112..36073001693561604.1480505-CDS-P-fluviatile_contig10:3607112..3607300Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3607113..3607300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.919.1

>prot_P-fluviatile_contig10.919.1 ID=prot_P-fluviatile_contig10.919.1|Name=mRNA_P-fluviatile_contig10.919.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=332bp
MGVLCIAVHADPERRRMVIITGGDDQAISVAEVELLHHPKKAADKSPSQG
EEQRGTSIHSKKRHFSARLLGGAPEVTDRAAGSAIKGISVFPVEHPAPPS
ESEERQTSGGSHVSTIVGENSAAGSSTPRSPIALSVFTVSRDQRLSRWDL
VEAETSPPALTFDKTGFGTRADVHQASDFSVRGHTDGAGIPRSLGLYRGG
RIFGSVTAAPSGGRPTAPASRRDTGDALLRRTARHGDMKQRCARWCLRWR
AGCVTDVADVSGLDTILLPGDPKQWCHVGDKPNACGHGANVEEGATQERL
CDRSAPEEPLASPAALVAVSGQGLQLIVFGA*
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mRNA from alignment at P-fluviatile_contig10:3605860..3607739-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.919.1 ID=mRNA_P-fluviatile_contig10.919.1|Name=mRNA_P-fluviatile_contig10.919.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1880bp|location=Sequence derived from alignment at P-fluviatile_contig10:3605860..3607739- (Porterinema fluviatile SAG_2381)
GTACATTGCATTCACAAGTTTTGACTGATTCCCGAAGCTGTTGCGCTCTT
GATACGTTTTGGGATCAAACGGGTTATTTTCGGTTACTTTCGATATCTGC
ATGCCTCAAGAATGCAGCTTTCTGGCGACCTTTCAACTGGTTGTTTACCC
CATGTCATTCATATATTTTTTCTCGTAGACGCTTGTTTAGCGGGAGGCAG
ATGGTACGTAGCTGCCGGCCTTGTCACAGGGCATTTTTTTCTCCACTCTT
TTCTCACCTCGTTGGTGGTTGCGCCAATTTAAAGAGGGCTCTGGCTAAAG
CGAGGTTCGTGGGTGGATTGAGCAACATTATGACCACCCCCCGTCTCCCC
TCTACAAGGGTGTTGCGTCAAACTCCTCCGCACCGCTACGACCTGGACTA
TTCCGCCGTTTCGCCCGATTCCCCCTTCGGCTTTCTCAGATGGGCGTCCT
CTGTATTGCTGTTCACGCCGATCCCGAAAGAAGACGCATGGTAATTATTA
CGGGAGGGGATGACCAGGCGATCAGTGTGGCCGAAGTGGAGTTGCTCCAC
CACCCGAAGAAAGCTGCCGACAAGAGTCCATCACAAGGAGAGGAACAACG
GGGCACATCCATCCACTCCAAAAAGAGGTGCGATATGTGGAATGTTGTTG
TCCTGGTGCATTCTTCCAGCGTCAAACGGCCCTGCGGAGTTAATGCAATA
CCTTGCTAGCTAGATTGCTTCCATAGATCAGCGGAGCCGGAATGTCCGCT
GAGTCTTCTGCAGTGCATATCAGGGGATGGCACGAAATTATGTCACAAAC
TTGAGAACGAACGCGGCGATAAGCTTGCGGAGGTCATGGAAGTTGTAAAC
GACAGTCCCTTGCTCTATCTGCCTGGCAGACATTTCTCCGCGAGACTTCT
GGGAGGCGCTCCGGAAGTGACGGACCGAGCCGCCGGGTCAGCGATCAAGG
GGATAAGCGTGTTCCCAGTGGAGCATCCAGCCCCTCCCTCGGAATCTGAG
GAACGCCAGACTTCCGGCGGGTCTCACGTGTCTACGATTGTCGGGGAAAA
CTCTGCGGCGGGGAGTAGTACACCTCGGTCGCCGATCGCCCTCTCCGTCT
TCACCGTATCTCGCGACCAGAGGCTATCGCGATGGGATCTCGTCGAGGCA
GAAACATCGCCGCCAGCGTTGACCTTCGACAAGACTGGCTTCGGCACGAG
GGCAGACGTCCACCAGGCGTCAGATTTTAGTGTTCGTGGCCATACTGACG
GCGCGGGCATTCCAAGGTCGCTGGGCCTGTATCGAGGCGGGCGTATTTTC
GGCTCAGTAACAGCTGCTCCCTCTGGCGGCCGACCGACGGCACCAGCGTC
GCGTCGAGACACCGGTGACGCGTTGTTGCGGCGGACAGCACGGCACGGCG
ATATGAAGCAACGGTGCGCTCGGTGGTGCTTGCGTTGGCGGGCGGGTTGC
GTCACCGACGTTGCGGATGTCAGCGGCCTAGACACGATCCTTCTTCCTGG
CGACCCAAAACAATGGTGCCATGTCGGCGACAAGCCAAACGCTTGTGGAC
ACGGGGCAAACGTGGAAGAGGGAGCCACTCAGGAAAGGCTTTGCGATCGT
AGCGCGCCTGAGGAGCCCCTGGCCTCTCCCGCGGCCCTCGTGGCCGTCTC
GGGGCAAGGGTTACAGCTTATTGTCTTCGGCGCGTGACGGAAGTTGGAGT
GTAGGCCAGCAGTAGGTGGGTCGCCCATGCGTTGAGTTGCACCTGCGATT
GACGTTCGAGGTCTACTGCTTGAGTTATCATGCCCGGTCGCAGCTGACGG
ACATGGTTTTAGCATGAGTCGTTTCCCAGCGGCAAGAAAAAATATGGGCG
CGCCCGTCCTTCTGAAAGTAGTAAATGGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig10:3605860..3607739-

>mRNA_P-fluviatile_contig10.919.1 ID=mRNA_P-fluviatile_contig10.919.1|Name=mRNA_P-fluviatile_contig10.919.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1992bp|location=Sequence derived from alignment at P-fluviatile_contig10:3605860..3607739- (Porterinema fluviatile SAG_2381)
ATGGGCGTCCTCTGTATTGCTGTTCACGCCGATCCCGAAAGAAGACGCAT
GGTAATTATTACGGGAGGGGATGACCAGGCGATCAGTGTGGCCGAAGTGG
AGTTGCTCCACCACCCGAAGAAAGCTGCCGACAAGAGTCCATCACAAGGA
GAGGAACAACGGGGCACATCCATCCACTCCAAAAAGAGATGGGCGTCCTC
TGTATTGCTGTTCACGCCGATCCCGAAAGAAGACGCATGGTAATTATTAC
GGGAGGGGATGACCAGGCGATCAGTGTGGCCGAAGTGGAGTTGCTCCACC
ACCCGAAGAAAGCTGCCGACAAGAGTCCATCACAAGGAGAGGAACAACGG
GGCACATCCATCCACTCCAAAAAGAGACATTTCTCCGCGAGACTTCTGGG
AGGCGCTCCGGAAGTGACGGACCGAGCCGCCGGGTCAGCGATCAAGGGGA
TAAGCGTGTTCCCAGTGGAGCATCCAGCCCCTCCCTCGGAATCTGAGGAA
CGCCAGACTTCCGGCGGGTCTCACGTGTCTACGATTGTCGGGGAAAACTC
TGCGGCGGGGAGTAGTACACCTCGGTCGCCGATCGCCCTCTCCGTCTTCA
CCGTATCTCGCGACCAGAGGCTATCGCGATGGGATCTCGTCGAGGCAGAA
ACATCGCCGCCAGCGTTGACCTTCGACAAGACTGGCTTCGGCACGAGGGC
AGACGTCCACCAGGCGTCAGATTTTAGTGTTCGTGGCCATACTGACGGCG
CGGGCATTCCAAGGTCGCTGGGCCTGTATCGAGGCGGGCGTATTTTCGGC
TCAGTAACAGCTGCTCCCTCTGGCGGCCGACCGACGGCACCAGCGTCGCG
TCGAGACACCGGTGACGCGTTGTTGCGGCGGACAGCACGGCACGGCGATA
TGAAGCAACGGTGCGCTCGGTGGTGCTTGCGTTGGCGGGCGGGTTGCGTC
ACCGACGTTGCGGATGTCAGCGGCCTAGACACGATCCTTCTTCCTGGCGA
CCCAAAACAATGGTGCCATGTCGGCGACAAGCCAAACGCTTGTGGACACG
GGGCAAACGTGGAAGAGGGAGCCACTCAGGAAAGGCTTTGCGATCGTAGC
GCGCCTGAGGAGCCCCTGGCCTCTCCCGCGGCCCTCGTGGCCGTCTCGGG
GCAAGGGTTACAGCTTATTGTCTTCGGCGCGTGAACATTTCTCCGCGAGA
CTTCTGGGAGGCGCTCCGGAAGTGACGGACCGAGCCGCCGGGTCAGCGAT
CAAGGGGATAAGCGTGTTCCCAGTGGAGCATCCAGCCCCTCCCTCGGAAT
CTGAGGAACGCCAGACTTCCGGCGGGTCTCACGTGTCTACGATTGTCGGG
GAAAACTCTGCGGCGGGGAGTAGTACACCTCGGTCGCCGATCGCCCTCTC
CGTCTTCACCGTATCTCGCGACCAGAGGCTATCGCGATGGGATCTCGTCG
AGGCAGAAACATCGCCGCCAGCGTTGACCTTCGACAAGACTGGCTTCGGC
ACGAGGGCAGACGTCCACCAGGCGTCAGATTTTAGTGTTCGTGGCCATAC
TGACGGCGCGGGCATTCCAAGGTCGCTGGGCCTGTATCGAGGCGGGCGTA
TTTTCGGCTCAGTAACAGCTGCTCCCTCTGGCGGCCGACCGACGGCACCA
GCGTCGCGTCGAGACACCGGTGACGCGTTGTTGCGGCGGACAGCACGGCA
CGGCGATATGAAGCAACGGTGCGCTCGGTGGTGCTTGCGTTGGCGGGCGG
GTTGCGTCACCGACGTTGCGGATGTCAGCGGCCTAGACACGATCCTTCTT
CCTGGCGACCCAAAACAATGGTGCCATGTCGGCGACAAGCCAAACGCTTG
TGGACACGGGGCAAACGTGGAAGAGGGAGCCACTCAGGAAAGGCTTTGCG
ATCGTAGCGCGCCTGAGGAGCCCCTGGCCTCTCCCGCGGCCCTCGTGGCC
GTCTCGGGGCAAGGGTTACAGCTTATTGTCTTCGGCGCGTGA
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