mRNA_P-fluviatile_contig10.917.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.917.1
Unique NamemRNA_P-fluviatile_contig10.917.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:3560161..3560572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size412
Cds size396
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.649701-UTR-P-fluviatile_contig10:3560160..35601761622815361.649701-UTR-P-fluviatile_contig10:3560160..3560176Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 3560161..3560176 +
1693561605.8049395-UTR-P-fluviatile_contig10:3560160..35601761693561605.8049395-UTR-P-fluviatile_contig10:3560160..3560176Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 3560161..3560176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.6608737-CDS-P-fluviatile_contig10:3560176..35605721622815361.6608737-CDS-P-fluviatile_contig10:3560176..3560572Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3560177..3560572 +
1693561605.8129945-CDS-P-fluviatile_contig10:3560176..35605721693561605.8129945-CDS-P-fluviatile_contig10:3560176..3560572Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3560177..3560572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.917.1prot_P-fluviatile_contig10.917.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 3560177..3560572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.917.1

>prot_P-fluviatile_contig10.917.1 ID=prot_P-fluviatile_contig10.917.1|Name=mRNA_P-fluviatile_contig10.917.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=132bp
MECSWQQSFSIGDELAAQINGAVGALLLQTPLHVSRFSSPLAAFVVLDTY
CSQLRTYASQCFLRASYFELSSQRQILPHFHMEMERDQNDHLVSVRPFTL
SYAAESRSIRPFMLDRECEKRTSGSAHLKVV*
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mRNA from alignment at P-fluviatile_contig10:3560161..3560572+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.917.1 ID=mRNA_P-fluviatile_contig10.917.1|Name=mRNA_P-fluviatile_contig10.917.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=412bp|location=Sequence derived from alignment at P-fluviatile_contig10:3560161..3560572+ (Porterinema fluviatile SAG_2381)
GGCCTGTAGAAATGGCATGGAGTGTTCGTGGCAGCAAAGTTTTTCGATCG
GTGATGAGCTGGCTGCTCAAATTAACGGGGCGGTGGGCGCGCTGCTACTT
CAAACACCATTGCATGTGTCCCGGTTTTCCTCGCCATTGGCCGCATTTGT
CGTACTTGACACCTATTGCTCGCAATTGCGCACGTACGCTTCACAATGTT
TCCTGCGTGCCTCGTACTTCGAGCTTTCAAGCCAGAGGCAGATCCTGCCG
CATTTCCACATGGAAATGGAAAGAGACCAGAATGATCATTTAGTCTCTGT
CCGGCCTTTTACGTTGAGCTATGCGGCGGAGTCGAGATCTATCCGGCCTT
TCATGTTAGACCGCGAATGCGAAAAACGAACGAGTGGTAGCGCACACCTG
AAAGTAGTATGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig10:3560161..3560572+

>mRNA_P-fluviatile_contig10.917.1 ID=mRNA_P-fluviatile_contig10.917.1|Name=mRNA_P-fluviatile_contig10.917.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=792bp|location=Sequence derived from alignment at P-fluviatile_contig10:3560161..3560572+ (Porterinema fluviatile SAG_2381)
ATGGAGTGTTCGTGGCAGCAAAGTTTTTCGATCGGTGATGAGCTGGCTGC
TCAAATTAACGGGGCGGTGGGCGCGCTGCTACTTCAAACACCATTGCATG
TGTCCCGGTTTTCCTCGCCATTGGCCGCATTTGTCGTACTTGACACCTAT
TGCTCGCAATTGCGCACGTACGCTTCACAATGTTTCCTGCGTGCCTCGTA
CTTCGAGCTTTCAAGCCAGAGGCAGATCCTGCCGCATTTCCACATGGAAA
TGGAAAGAGACCAGAATGATCATTTAGTCTCTGTCCGGCCTTTTACGTTG
AGCTATGCGGCGGAGTCGAGATCTATCCGGCCTTTCATGTTAGACCGCGA
ATGCGAAAAACGAACGAGTGGTAGCGCACACCTGAAAGTAGTATGAATGG
AGTGTTCGTGGCAGCAAAGTTTTTCGATCGGTGATGAGCTGGCTGCTCAA
ATTAACGGGGCGGTGGGCGCGCTGCTACTTCAAACACCATTGCATGTGTC
CCGGTTTTCCTCGCCATTGGCCGCATTTGTCGTACTTGACACCTATTGCT
CGCAATTGCGCACGTACGCTTCACAATGTTTCCTGCGTGCCTCGTACTTC
GAGCTTTCAAGCCAGAGGCAGATCCTGCCGCATTTCCACATGGAAATGGA
AAGAGACCAGAATGATCATTTAGTCTCTGTCCGGCCTTTTACGTTGAGCT
ATGCGGCGGAGTCGAGATCTATCCGGCCTTTCATGTTAGACCGCGAATGC
GAAAAACGAACGAGTGGTAGCGCACACCTGAAAGTAGTATGA
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